Wall clock time and date at job start Tue Mar 31 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46802 * 299.99867 * 3 2 1 6 6 H 1.48503 * 109.47222 * 59.99663 * 3 2 1 7 7 C 1.37871 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99765 * 181.26719 * 7 2 1 9 9 C 1.50703 * 120.00232 * 1.26173 * 7 2 1 10 10 C 1.53001 * 115.54756 * 324.94868 * 9 7 2 11 11 N 1.46492 * 109.47176 * 305.55720 * 10 9 7 12 12 C 1.34777 * 120.00006 * 184.72507 * 11 10 9 13 13 O 1.21524 * 120.00033 * 5.42942 * 12 11 10 14 14 C 1.48081 * 120.00105 * 185.42424 * 12 11 10 15 15 C 1.39864 * 120.92947 * 355.40513 * 14 12 11 16 16 C 1.38084 * 119.01972 * 180.02562 * 15 14 12 17 17 N 1.31849 * 120.93580 * 359.97438 * 16 15 14 18 18 C 1.31752 * 122.07728 * 0.02562 * 17 16 15 19 19 C 1.38363 * 120.86835 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 120.52056 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49536 * 110.61299 * 9 7 2 22 22 C 1.52993 * 117.50000 * 179.27505 * 9 7 2 23 23 H 0.97002 * 120.00007 * 5.00630 * 1 2 3 24 24 H 1.09000 * 109.46903 * 185.55730 * 10 9 7 25 25 H 1.08999 * 109.47118 * 65.55852 * 10 9 7 26 26 H 0.97001 * 120.00376 * 4.72898 * 11 10 9 27 27 H 1.07998 * 120.49529 * 0.04451 * 15 14 12 28 28 H 1.08004 * 119.53071 * 179.72494 * 16 15 14 29 29 H 1.07995 * 119.56562 * 179.97438 * 18 17 16 30 30 H 1.08996 * 117.49915 * 215.00407 * 21 9 7 31 31 H 1.09002 * 117.50086 * 0.02874 * 21 9 7 32 32 H 1.09007 * 117.49854 * 359.97438 * 22 9 7 33 33 H 1.09000 * 117.49818 * 144.97586 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0212 9 6 1.2514 -2.4990 -0.0276 10 6 -0.0721 -2.5137 0.7400 11 7 0.1596 -2.0836 2.1210 12 6 -0.8502 -2.1097 3.0133 13 8 -1.9255 -2.5816 2.7005 14 6 -0.6493 -1.5634 4.3749 15 6 0.6055 -1.1032 4.7870 16 6 0.7485 -0.6021 6.0657 17 7 -0.2769 -0.5534 6.8932 18 6 -1.4759 -0.9758 6.5471 19 6 -1.7095 -1.4931 5.2853 20 17 -3.2929 -2.0476 4.8391 21 6 1.3363 -3.3362 -1.3054 22 6 2.0737 -3.7891 -0.0427 23 1 -0.4850 0.8369 -0.0733 24 1 -0.4820 -3.5237 0.7379 25 1 -0.7773 -1.8344 0.2613 26 1 1.0397 -1.7800 2.3934 27 1 1.4502 -1.1390 4.1150 28 1 1.7148 -0.2486 6.3941 29 1 -2.2871 -0.9173 7.2577 30 1 0.4495 -3.8975 -1.5992 31 1 1.9374 -2.9433 -2.1255 32 1 3.1596 -3.6939 -0.0328 33 1 1.6721 -4.6482 0.4945 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404745318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:49 Heat of formation + Delta-G solvation = 10.496866 kcal Electronic energy + Delta-G solvation = -19463.695533 eV Core-core repulsion = 16322.837955 eV Total energy + Delta-G solvation = -3140.857577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59754 -40.03884 -38.43523 -37.55102 -34.99583 -34.16604 -33.51445 -32.10026 -28.16515 -27.41207 -25.39395 -24.39321 -22.97368 -21.56397 -21.15657 -19.38062 -18.18199 -17.70766 -17.18249 -16.75945 -16.46031 -16.16221 -16.12372 -15.39627 -15.09639 -15.00220 -14.69530 -14.16686 -13.64471 -13.36737 -13.17836 -12.99424 -12.93934 -12.58226 -12.26458 -12.21592 -12.04023 -11.51714 -11.23931 -10.96693 -10.89578 -10.71053 -10.39515 -10.14831 -10.04465 -9.67679 -7.96174 -6.20839 -0.48888 -0.15378 1.02385 1.41624 1.48960 1.56875 1.91783 2.29971 2.42366 2.70567 3.04811 3.35785 3.55972 3.59806 3.69581 3.77668 4.09804 4.26780 4.52812 4.53574 4.62482 4.75434 4.80248 4.80936 4.96637 5.12717 5.29756 5.36629 5.52584 5.60180 5.78531 5.96964 6.37088 6.66641 6.72741 6.89974 7.37147 7.44863 8.91315 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.006244 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.287315 B = 4483.081252 C = 5188.366320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.037 3.963 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.006 3.994 10 C 0.177 3.823 11 N -0.667 5.667 12 C 0.534 3.466 13 O -0.565 6.565 14 C -0.092 4.092 15 C -0.127 4.127 16 C 0.106 3.894 17 N -0.467 5.467 18 C 0.112 3.888 19 C -0.062 4.062 20 Cl -0.035 7.035 21 C -0.199 4.199 22 C -0.186 4.186 23 H 0.257 0.743 24 H 0.021 0.979 25 H 0.082 0.918 26 H 0.405 0.595 27 H 0.163 0.837 28 H 0.207 0.793 29 H 0.195 0.805 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 -1.042 11.609 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.054 3.946 11 N -0.315 5.315 12 C 0.320 3.680 13 O -0.446 6.446 14 C -0.104 4.104 15 C -0.148 4.148 16 C -0.050 4.050 17 N -0.176 5.176 18 C -0.046 4.046 19 C -0.092 4.092 20 Cl -0.006 7.006 21 C -0.238 4.238 22 C -0.224 4.224 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.099 0.901 26 H 0.241 0.759 27 H 0.180 0.820 28 H 0.224 0.776 29 H 0.212 0.788 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.715 -0.952 12.188 12.246 hybrid contribution 0.257 0.546 -1.446 1.566 sum 0.972 -0.407 10.743 10.794 Atomic orbital electron populations 1.70037 1.06828 1.26793 1.49306 1.25569 0.95306 1.01561 0.94047 0.85679 0.79396 0.80300 0.77304 1.18815 1.21787 1.20701 1.20740 0.92539 0.89240 1.51266 0.92025 1.19299 0.93589 0.90587 0.95954 1.20805 0.97827 0.95668 0.80318 1.45508 1.12365 1.63363 1.10258 1.18359 0.84536 0.80125 0.84990 1.90758 1.26305 1.47527 1.79987 1.20500 0.95001 1.00513 0.94342 1.22713 0.96286 0.96790 0.98993 1.23433 0.99199 0.93760 0.88583 1.67786 0.99563 1.14313 1.35951 1.23167 0.96057 0.93234 0.92121 1.22430 0.88403 1.02105 0.96294 1.98403 1.21760 1.87457 1.92933 1.22961 1.01905 1.06208 0.92701 1.22956 0.98377 0.99112 1.01917 0.93312 0.96110 0.90062 0.75901 0.81968 0.77633 0.78833 0.90764 0.90316 0.89528 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.20 10.22 21.45 0.22 -45.98 16 2 C 0.04 1.77 5.29 84.65 0.45 2.22 16 3 Si 0.95 39.03 29.54 68.60 2.03 41.06 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.50 -23.76 8.31 25.60 0.21 -23.54 16 8 H 0.06 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.28 2.06 -52.93 -0.11 0.18 16 10 C 0.18 8.20 4.63 86.38 0.40 8.60 16 11 N -0.67 -27.60 5.13 -465.76 -2.39 -29.99 16 12 C 0.53 22.01 7.77 86.86 0.68 22.69 16 13 O -0.57 -26.56 14.17 -3.79 -0.05 -26.61 16 14 C -0.09 -3.06 5.91 -19.86 -0.12 -3.17 16 15 C -0.13 -3.30 9.61 22.63 0.22 -3.08 16 16 C 0.11 2.25 11.17 84.65 0.95 3.20 16 17 N -0.47 -11.07 10.33 -195.91 -2.02 -13.10 16 18 C 0.11 2.72 10.99 84.73 0.93 3.65 16 19 C -0.06 -1.90 6.38 22.71 0.14 -1.75 16 20 Cl -0.03 -1.12 26.25 -2.72 -0.07 -1.20 16 21 C -0.20 -8.23 9.96 30.62 0.30 -7.93 16 22 C -0.19 -7.13 9.92 30.62 0.30 -6.82 16 23 H 0.26 13.16 8.32 -92.71 -0.77 12.39 16 24 H 0.02 0.96 8.05 -2.39 -0.02 0.94 16 25 H 0.08 4.37 5.90 -2.39 -0.01 4.36 16 26 H 0.40 15.39 6.10 -92.71 -0.57 14.83 16 27 H 0.16 3.74 6.55 -2.91 -0.02 3.72 16 28 H 0.21 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.08 3.24 8.14 -2.39 -0.02 3.23 16 32 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 33 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -59.08 300.39 2.65 -56.43 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.58 Total: 25.15 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 4.36 Total: -5.76 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -4.20 Total: -89.07 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.20 kcal Total: -59.08 2.65 -56.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404745318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.929 kcal (2) G-P(sol) polarization free energy of solvation -59.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds