Wall clock time and date at job start Tue Mar 31 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47019 * 240.00203 * 3 2 1 5 5 H 1.48494 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46875 * 120.00402 * 3 2 1 7 7 C 1.37880 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 175.50302 * 7 2 1 9 9 C 1.50701 * 119.99802 * 355.78405 * 7 2 1 10 10 C 1.52993 * 115.55379 * 35.31218 * 9 7 2 11 11 N 1.46500 * 109.46893 * 54.24766 * 10 9 7 12 12 C 1.34777 * 119.99883 * 184.99490 * 11 10 9 13 13 O 1.21514 * 120.00165 * 5.06521 * 12 11 10 14 14 C 1.48161 * 120.00069 * 185.05763 * 12 11 10 15 15 C 1.39868 * 120.91370 * 185.12073 * 14 12 11 16 16 C 1.38092 * 119.03111 * 180.02562 * 15 14 12 17 17 N 1.31846 * 120.91711 * 359.97438 * 16 15 14 18 18 C 1.31895 * 122.03109 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.56850 * 180.02562 * 18 17 16 20 20 C 1.38339 * 120.85783 * 359.71943 * 18 17 16 21 21 C 1.53003 * 117.49375 * 249.64694 * 9 7 2 22 22 C 1.53007 * 117.49762 * 180.99063 * 9 7 2 23 23 H 0.96998 * 119.99815 * 4.99727 * 1 2 3 24 24 H 1.09006 * 109.47130 * 174.24079 * 10 9 7 25 25 H 1.09001 * 109.47637 * 294.24531 * 10 9 7 26 26 H 0.97001 * 120.00527 * 4.98822 * 11 10 9 27 27 H 1.07989 * 120.48443 * 0.02562 * 15 14 12 28 28 H 1.07992 * 119.53828 * 179.97438 * 16 15 14 29 29 H 1.08006 * 120.50458 * 180.30984 * 20 18 17 30 30 H 1.09003 * 117.50218 * 359.97438 * 21 9 7 31 31 H 1.09002 * 117.50060 * 145.02537 * 21 9 7 32 32 H 1.09000 * 117.49467 * 214.98070 * 22 9 7 33 33 H 1.09000 * 117.49901 * 359.97098 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0821 -1.1955 -0.0739 9 6 1.2541 -2.4974 0.0948 10 6 -0.0994 -2.5333 -0.6174 11 7 0.0748 -2.1377 -2.0172 12 6 -1.0010 -1.9985 -2.8171 13 8 -2.1196 -2.1107 -2.3559 14 6 -0.8198 -1.7085 -4.2587 15 6 -1.9198 -1.4554 -5.0846 16 6 -1.7062 -1.1901 -6.4228 17 7 -0.4867 -1.1729 -6.9237 18 6 0.5781 -1.4051 -6.1807 19 17 2.1545 -1.3657 -6.9068 20 6 0.4554 -1.6732 -4.8291 21 6 1.3916 -3.2985 1.3911 22 6 2.0774 -3.7870 0.1128 23 1 -0.4850 0.8368 -0.0732 24 1 -0.5066 -3.5435 -0.5734 25 1 -0.7863 -1.8430 -0.1276 26 1 0.9644 -1.9758 -2.3684 27 1 -2.9217 -1.4673 -4.6816 28 1 -2.5497 -0.9939 -7.0680 29 1 1.3316 -1.8576 -4.2251 30 1 2.0252 -2.8830 2.1748 31 1 0.5179 -3.8514 1.7362 32 1 1.6545 -4.6609 -0.3828 33 1 3.1618 -3.6927 0.0551 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404748316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:52 Heat of formation + Delta-G solvation = 19.388781 kcal Electronic energy + Delta-G solvation = -19280.291939 eV Core-core repulsion = 16139.819944 eV Total energy + Delta-G solvation = -3140.471995 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44712 -38.59815 -36.80593 -36.60362 -33.46718 -32.53100 -32.19903 -31.03294 -26.56638 -25.58475 -24.11639 -23.32436 -21.34325 -20.12709 -19.40339 -18.00916 -16.79365 -16.28735 -15.81498 -15.30685 -14.99273 -14.73081 -14.64023 -14.16409 -14.02400 -13.72368 -13.02775 -12.60882 -11.99124 -11.88732 -11.73658 -11.53570 -11.37789 -11.11398 -10.83055 -10.59142 -10.33626 -10.04575 -9.89774 -9.79871 -9.30070 -9.07617 -9.06766 -8.93687 -8.38121 -8.03137 -6.07572 -4.27906 0.72222 0.85236 1.72774 3.18078 3.18909 3.26471 3.27534 3.72355 3.95809 4.23664 4.34951 4.72566 4.83901 4.89320 5.14225 5.16316 5.39566 5.44578 5.71533 5.92711 6.06649 6.21467 6.32870 6.43719 6.52507 6.60335 6.80787 6.98468 7.17806 7.40236 7.51627 7.56291 7.87482 8.21142 8.33685 8.73080 8.90632 9.36295 10.81672 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.005834 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.705680 B = 4798.255581 C = 5214.085340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.162 3.838 11 N -0.666 5.666 12 C 0.545 3.455 13 O -0.544 6.544 14 C -0.057 4.057 15 C -0.118 4.118 16 C 0.111 3.889 17 N -0.473 5.473 18 C 0.169 3.831 19 Cl -0.031 7.031 20 C -0.124 4.124 21 C -0.197 4.197 22 C -0.212 4.212 23 H 0.264 0.736 24 H 0.022 0.978 25 H 0.122 0.878 26 H 0.398 0.602 27 H 0.155 0.845 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -2.847 -10.339 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.033 3.967 10 C 0.040 3.960 11 N -0.312 5.312 12 C 0.329 3.671 13 O -0.424 6.424 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.046 4.046 17 N -0.185 5.185 18 C 0.005 3.995 19 Cl -0.003 7.003 20 C -0.146 4.146 21 C -0.235 4.235 22 C -0.250 4.250 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.139 0.861 26 H 0.233 0.767 27 H 0.172 0.828 28 H 0.187 0.813 29 H 0.170 0.830 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.948 -2.630 -10.832 11.187 hybrid contribution 1.078 0.821 0.676 1.514 sum 0.129 -1.809 -10.155 10.316 Atomic orbital electron populations 1.69824 1.05679 1.26980 1.47831 1.25005 0.94872 0.99135 0.94007 0.86633 0.79622 0.82849 0.78855 1.20097 1.21177 1.20065 1.20472 0.92788 0.88482 1.51920 0.92029 1.19233 0.92760 0.90046 0.94669 1.21193 0.98602 0.96892 0.79339 1.45585 1.08162 1.65477 1.12018 1.17834 0.85639 0.79089 0.84545 1.90722 1.24059 1.52173 1.75411 1.20761 0.92896 0.97408 0.95797 1.22416 1.00729 0.96800 0.93974 1.22650 0.93066 0.95688 0.93184 1.66849 0.98692 1.12980 1.39959 1.21484 0.88431 1.00116 0.89424 1.98407 1.20853 1.96599 1.84404 1.22141 0.98817 0.99693 0.93947 1.22946 1.01709 1.06412 0.92481 1.22975 0.98527 0.99894 1.03564 0.92503 0.95943 0.86084 0.76655 0.82760 0.81275 0.83011 0.90133 0.91392 0.91289 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.42 10.11 55.43 0.56 -21.86 16 2 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 3 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.50 -12.19 8.44 -34.44 -0.29 -12.48 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.76 2.04 -155.66 -0.32 0.44 16 10 C 0.16 3.64 4.62 -4.05 -0.02 3.62 16 11 N -0.67 -13.51 4.97 -61.15 -0.30 -13.81 16 12 C 0.55 10.81 7.78 -12.19 -0.09 10.71 16 13 O -0.54 -12.38 16.44 5.35 0.09 -12.29 16 14 C -0.06 -0.92 5.91 -104.65 -0.62 -1.54 16 15 C -0.12 -1.62 9.68 -39.03 -0.38 -2.00 16 16 C 0.11 1.33 11.17 -17.60 -0.20 1.13 16 17 N -0.47 -6.63 10.31 -10.41 -0.11 -6.73 16 18 C 0.17 2.42 7.27 -17.49 -0.13 2.29 16 19 Cl -0.03 -0.40 29.10 -51.86 -1.51 -1.91 16 20 C -0.12 -1.83 9.36 -38.98 -0.36 -2.19 16 21 C -0.20 -4.11 9.96 -26.69 -0.27 -4.38 16 22 C -0.21 -4.19 9.92 -26.69 -0.26 -4.45 16 23 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 24 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.12 3.13 5.89 -51.93 -0.31 2.83 16 26 H 0.40 7.59 6.32 -40.82 -0.26 7.33 16 27 H 0.15 1.98 7.75 -52.49 -0.41 1.57 16 28 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.15 2.07 6.60 -52.48 -0.35 1.72 16 30 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -27.53 304.67 -8.13 -35.66 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.40 Total: 8.70 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -3.03 Total: -7.09 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.15 Total: -42.40 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.53 -8.13 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404748316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.046 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds