Wall clock time and date at job start Tue Mar 31 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47019 * 240.00203 * 3 2 1 5 5 H 1.48494 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46875 * 120.00402 * 3 2 1 7 7 C 1.37880 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 175.50302 * 7 2 1 9 9 C 1.50701 * 119.99802 * 355.78405 * 7 2 1 10 10 C 1.52993 * 115.55379 * 35.31218 * 9 7 2 11 11 N 1.46500 * 109.46893 * 54.24766 * 10 9 7 12 12 C 1.34777 * 119.99883 * 184.99490 * 11 10 9 13 13 O 1.21514 * 120.00165 * 5.06521 * 12 11 10 14 14 C 1.48161 * 120.00069 * 185.05763 * 12 11 10 15 15 C 1.39868 * 120.91370 * 185.12073 * 14 12 11 16 16 C 1.38092 * 119.03111 * 180.02562 * 15 14 12 17 17 N 1.31846 * 120.91711 * 359.97438 * 16 15 14 18 18 C 1.31895 * 122.03109 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.56850 * 180.02562 * 18 17 16 20 20 C 1.38339 * 120.85783 * 359.71943 * 18 17 16 21 21 C 1.53003 * 117.49375 * 249.64694 * 9 7 2 22 22 C 1.53007 * 117.49762 * 180.99063 * 9 7 2 23 23 H 0.96998 * 119.99815 * 4.99727 * 1 2 3 24 24 H 1.09006 * 109.47130 * 174.24079 * 10 9 7 25 25 H 1.09001 * 109.47637 * 294.24531 * 10 9 7 26 26 H 0.97001 * 120.00527 * 4.98822 * 11 10 9 27 27 H 1.07989 * 120.48443 * 0.02562 * 15 14 12 28 28 H 1.07992 * 119.53828 * 179.97438 * 16 15 14 29 29 H 1.08006 * 120.50458 * 180.30984 * 20 18 17 30 30 H 1.09003 * 117.50218 * 359.97438 * 21 9 7 31 31 H 1.09002 * 117.50060 * 145.02537 * 21 9 7 32 32 H 1.09000 * 117.49467 * 214.98070 * 22 9 7 33 33 H 1.09000 * 117.49901 * 359.97098 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0821 -1.1955 -0.0739 9 6 1.2541 -2.4974 0.0948 10 6 -0.0994 -2.5333 -0.6174 11 7 0.0748 -2.1377 -2.0172 12 6 -1.0010 -1.9985 -2.8171 13 8 -2.1196 -2.1107 -2.3559 14 6 -0.8198 -1.7085 -4.2587 15 6 -1.9198 -1.4554 -5.0846 16 6 -1.7062 -1.1901 -6.4228 17 7 -0.4867 -1.1729 -6.9237 18 6 0.5781 -1.4051 -6.1807 19 17 2.1545 -1.3657 -6.9068 20 6 0.4554 -1.6732 -4.8291 21 6 1.3916 -3.2985 1.3911 22 6 2.0774 -3.7870 0.1128 23 1 -0.4850 0.8368 -0.0732 24 1 -0.5066 -3.5435 -0.5734 25 1 -0.7863 -1.8430 -0.1276 26 1 0.9644 -1.9758 -2.3684 27 1 -2.9217 -1.4673 -4.6816 28 1 -2.5497 -0.9939 -7.0680 29 1 1.3316 -1.8576 -4.2251 30 1 2.0252 -2.8830 2.1748 31 1 0.5179 -3.8514 1.7362 32 1 1.6545 -4.6609 -0.3828 33 1 3.1618 -3.6927 0.0551 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404748316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:52 Heat of formation + Delta-G solvation = 3.536169 kcal Electronic energy + Delta-G solvation = -19280.979360 eV Core-core repulsion = 16139.819944 eV Total energy + Delta-G solvation = -3141.159416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64998 -40.09394 -38.44985 -37.70340 -35.05121 -34.18370 -33.66907 -32.12611 -28.19213 -27.42229 -25.38941 -24.47734 -22.97075 -21.57288 -21.15331 -19.46643 -18.16784 -17.79002 -16.90288 -16.77698 -16.66390 -16.24937 -16.12719 -15.46649 -15.36331 -15.13301 -14.68978 -14.16731 -13.63672 -13.39385 -13.04194 -12.89888 -12.80430 -12.61526 -12.40935 -12.32142 -12.03466 -11.61465 -11.27548 -11.11769 -10.91884 -10.74209 -10.62773 -10.16776 -10.12516 -9.72849 -7.95398 -6.20808 -0.47549 -0.21055 0.66586 1.41673 1.45889 1.50662 1.85948 2.27282 2.40468 2.66879 3.04123 3.34654 3.55724 3.64958 3.76317 3.87724 4.04757 4.26397 4.45038 4.51932 4.55465 4.74057 4.80113 4.94808 4.97714 5.13914 5.29983 5.30439 5.53264 5.60439 5.76957 5.98459 6.36146 6.50858 6.70590 6.87317 7.33983 7.44729 8.90009 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.005834 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.705680 B = 4798.255581 C = 5214.085340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.173 3.827 11 N -0.666 5.666 12 C 0.544 3.456 13 O -0.581 6.581 14 C -0.077 4.077 15 C -0.116 4.116 16 C 0.127 3.873 17 N -0.480 5.480 18 C 0.163 3.837 19 Cl -0.020 7.020 20 C -0.125 4.125 21 C -0.199 4.199 22 C -0.185 4.185 23 H 0.256 0.744 24 H 0.025 0.975 25 H 0.085 0.915 26 H 0.404 0.596 27 H 0.162 0.838 28 H 0.214 0.786 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -3.035 -11.854 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.004 3.996 10 C 0.049 3.951 11 N -0.312 5.312 12 C 0.330 3.670 13 O -0.463 6.463 14 C -0.088 4.088 15 C -0.136 4.136 16 C -0.030 4.030 17 N -0.192 5.192 18 C -0.001 4.001 19 Cl 0.008 6.992 20 C -0.146 4.146 21 C -0.237 4.237 22 C -0.223 4.223 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.240 0.760 27 H 0.180 0.820 28 H 0.231 0.769 29 H 0.174 0.826 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.323 -2.827 -12.358 12.681 hybrid contribution 0.893 0.847 1.125 1.667 sum 0.571 -1.980 -11.233 11.420 Atomic orbital electron populations 1.70016 1.06624 1.26725 1.49161 1.25542 0.95334 1.01426 0.94145 0.85853 0.78455 0.79891 0.78910 1.19238 1.21974 1.20151 1.20673 0.92750 0.89466 1.51231 0.92269 1.19282 0.93317 0.90715 0.96314 1.20857 0.97951 0.95959 0.80302 1.45509 1.08692 1.65601 1.11359 1.18338 0.84826 0.77854 0.86004 1.90689 1.25259 1.53752 1.76578 1.20495 0.94542 0.99948 0.93814 1.22620 1.00387 0.96080 0.94560 1.23301 0.93562 0.93373 0.92776 1.66980 0.99220 1.12958 1.40051 1.21566 0.89127 1.00074 0.89290 1.98408 1.20120 1.96521 1.84106 1.22120 0.98393 0.99756 0.94378 1.22966 1.02274 1.06122 0.92365 1.22972 0.98665 0.98684 1.01935 0.93376 0.95684 0.89673 0.76044 0.82044 0.76944 0.82571 0.90542 0.90428 0.89473 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.82 10.11 21.45 0.22 -46.61 16 2 C 0.04 1.86 5.31 84.65 0.45 2.31 16 3 Si 0.94 40.50 29.54 68.60 2.03 42.53 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.50 -24.42 8.44 25.60 0.22 -24.21 16 8 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.00 0.19 2.04 -52.93 -0.11 0.09 16 10 C 0.17 7.85 4.62 86.38 0.40 8.25 16 11 N -0.67 -27.21 4.97 -465.67 -2.32 -29.53 16 12 C 0.54 21.80 7.78 86.88 0.68 22.48 16 13 O -0.58 -27.01 16.44 -3.76 -0.06 -27.07 16 14 C -0.08 -2.43 5.91 -19.88 -0.12 -2.55 16 15 C -0.12 -2.98 9.68 22.63 0.22 -2.77 16 16 C 0.13 2.66 11.17 84.66 0.95 3.61 16 17 N -0.48 -12.22 10.31 -186.86 -1.93 -14.14 16 18 C 0.16 4.35 7.27 84.71 0.62 4.97 16 19 Cl -0.02 -0.48 29.10 -2.72 -0.08 -0.56 16 20 C -0.12 -3.54 9.36 22.66 0.21 -3.33 16 21 C -0.20 -8.10 9.96 30.62 0.30 -7.80 16 22 C -0.19 -6.95 9.92 30.62 0.30 -6.65 16 23 H 0.26 13.49 8.32 -92.71 -0.77 12.72 16 24 H 0.03 1.10 8.09 -2.38 -0.02 1.08 16 25 H 0.09 4.55 5.89 -2.39 -0.01 4.54 16 26 H 0.40 15.39 6.32 -92.71 -0.59 14.80 16 27 H 0.16 3.91 7.75 -2.92 -0.02 3.89 16 28 H 0.21 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.16 4.16 6.60 -2.91 -0.02 4.14 16 30 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.94 16 33 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -58.64 304.67 2.54 -56.09 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.56 Total: 24.88 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 4.12 Total: -5.60 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -4.03 Total: -90.28 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.07 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -58.64 2.54 -56.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404748316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.631 kcal (2) G-P(sol) polarization free energy of solvation -58.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds