Wall clock time and date at job start Tue Mar 31 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48495 * 109.47261 * 271.68806 * 3 2 1 5 5 H 1.48498 * 109.46936 * 31.69186 * 3 2 1 6 6 H 1.48505 * 109.46687 * 151.69060 * 3 2 1 7 7 C 1.37878 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99883 * 359.47004 * 7 2 1 9 9 C 1.50697 * 119.99966 * 179.48284 * 7 2 1 10 10 C 1.52999 * 115.55338 * 88.17512 * 9 7 2 11 11 N 1.46504 * 109.46842 * 56.08815 * 10 9 7 12 12 C 1.34774 * 119.99758 * 185.06666 * 11 10 9 13 13 O 1.21559 * 120.00515 * 5.03046 * 12 11 10 14 14 C 1.47760 * 119.99789 * 185.03435 * 12 11 10 15 15 C 1.40012 * 120.57167 * 354.72530 * 14 12 11 16 16 C 1.38346 * 118.30859 * 180.02562 * 15 14 12 17 17 C 1.38355 * 119.34196 * 359.97438 * 16 15 14 18 18 N 1.31917 * 121.10305 * 0.02562 * 17 16 15 19 19 C 1.31825 * 121.86388 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.74195 * 179.97438 * 19 18 17 21 21 C 1.53001 * 117.49463 * 233.84663 * 9 7 2 22 22 C 1.53000 * 117.49599 * 302.50549 * 9 7 2 23 23 H 0.96997 * 120.00084 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47370 * 296.08924 * 10 9 7 25 25 H 1.09003 * 109.47148 * 176.08084 * 10 9 7 26 26 H 0.96995 * 120.00136 * 5.06030 * 11 10 9 27 27 H 1.08001 * 120.84806 * 0.02562 * 15 14 12 28 28 H 1.08001 * 120.33300 * 180.02562 * 16 15 14 29 29 H 1.08000 * 119.44791 * 180.27830 * 17 16 15 30 30 H 1.09001 * 117.49864 * 214.99783 * 21 9 7 31 31 H 1.08994 * 117.49997 * 0.02562 * 21 9 7 32 32 H 1.08998 * 117.50308 * 359.97438 * 22 9 7 33 33 H 1.09006 * 117.49799 * 144.97526 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4608 2.0672 -1.3994 5 1 1.4648 2.6421 0.7355 6 1 3.5641 1.4302 0.6640 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 0.0077 9 6 3.5115 -1.1940 -0.0123 10 6 4.1822 -1.1444 1.3619 11 7 3.7040 -2.2622 2.1793 12 6 4.0819 -2.3640 3.4690 13 8 4.7440 -1.4818 3.9798 14 6 3.6914 -3.5481 4.2619 15 6 2.8385 -4.5178 3.7210 16 6 2.5029 -5.6072 4.5049 17 6 3.0158 -5.7041 5.7862 18 7 3.8177 -4.7757 6.2713 19 6 4.1670 -3.7193 5.5645 20 17 5.2252 -2.5306 6.2580 21 6 4.2093 -1.9991 -1.1104 22 6 4.2088 -0.4693 -1.1653 23 1 -0.4850 0.8400 0.0004 24 1 3.9350 -0.2033 1.8532 25 1 5.2630 -1.2187 1.2416 26 1 3.1153 -2.9290 1.7923 27 1 2.4525 -4.4179 2.7173 28 1 1.8478 -6.3748 4.1202 29 1 2.7585 -6.5561 6.3981 30 1 5.1463 -2.4934 -0.8538 31 1 3.5785 -2.5284 -1.8244 32 1 3.5777 0.0070 -1.9156 33 1 5.1453 0.0431 -0.9447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404753277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:33 Heat of formation + Delta-G solvation = 6.619582 kcal Electronic energy + Delta-G solvation = -19188.634815 eV Core-core repulsion = 16047.609106 eV Total energy + Delta-G solvation = -3141.025709 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65472 -40.14258 -38.66777 -37.60163 -35.22659 -34.22773 -33.67662 -32.24075 -28.55708 -27.31717 -25.36993 -24.42273 -23.34750 -21.65978 -21.11110 -19.25667 -18.35472 -17.98084 -17.67708 -16.91912 -16.41432 -16.36925 -15.83495 -15.37751 -15.32903 -14.88135 -14.76911 -14.31229 -14.05825 -13.80437 -13.46352 -13.10104 -12.74881 -12.64818 -12.38247 -12.16183 -11.98587 -11.56483 -11.19748 -11.11008 -10.98391 -10.67233 -10.55278 -10.29841 -10.14624 -9.82413 -8.30112 -6.35595 -0.54082 -0.02054 0.79549 1.32553 1.40274 1.48962 1.81251 2.11924 2.36188 2.65302 3.06025 3.20397 3.42810 3.61863 3.66446 3.86279 4.04381 4.18201 4.37297 4.38227 4.41487 4.54731 4.78665 4.84443 4.88888 4.97710 5.11275 5.28337 5.39449 5.50180 5.52864 5.70542 6.28282 6.52563 6.62725 6.73368 7.21077 7.35561 8.83819 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021494 B = 0.005145 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.384136 B = 5440.757849 C = 5746.402135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.030 3.970 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.307 1.307 6 H -0.242 1.242 7 C -0.475 4.475 8 H 0.053 0.947 9 C -0.042 4.042 10 C 0.164 3.836 11 N -0.690 5.690 12 C 0.545 3.455 13 O -0.561 6.561 14 C -0.186 4.186 15 C -0.032 4.032 16 C -0.156 4.156 17 C 0.139 3.861 18 N -0.505 5.505 19 C 0.200 3.800 20 Cl -0.018 7.018 21 C -0.150 4.150 22 C -0.195 4.195 23 H 0.263 0.737 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.410 0.590 27 H 0.165 0.835 28 H 0.195 0.805 29 H 0.213 0.787 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 -13.117 6.720 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.235 1.235 6 H -0.165 1.165 7 C -0.513 4.513 8 H 0.071 0.929 9 C -0.043 4.043 10 C 0.040 3.960 11 N -0.340 5.340 12 C 0.331 3.669 13 O -0.441 6.441 14 C -0.192 4.192 15 C -0.058 4.058 16 C -0.175 4.175 17 C -0.018 4.018 18 N -0.217 5.217 19 C 0.036 3.964 20 Cl 0.011 6.989 21 C -0.187 4.187 22 C -0.233 4.233 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.247 0.753 27 H 0.183 0.817 28 H 0.212 0.788 29 H 0.229 0.771 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.617 -12.346 7.946 16.540 hybrid contribution -0.604 1.289 -0.955 1.714 sum 7.013 -11.057 6.991 14.843 Atomic orbital electron populations 1.69990 1.07898 1.27748 1.52426 1.25633 0.95025 1.02164 0.94056 0.86144 0.80241 0.79969 0.78722 1.19325 1.23472 1.16521 1.20338 0.88294 0.93012 1.49636 0.92868 1.19488 0.93164 1.04391 0.87290 1.20932 0.96263 0.88349 0.90428 1.45654 1.49834 1.28520 1.10042 1.18285 0.80292 0.86160 0.82129 1.90802 1.40987 1.41520 1.70801 1.20619 1.04665 0.98739 0.95194 1.22216 0.91120 0.91144 1.01344 1.22697 1.01120 0.99046 0.94645 1.23752 0.88412 0.95384 0.94214 1.67203 1.15207 1.02013 1.37277 1.21841 0.93746 0.91528 0.89317 1.98431 1.62583 1.53113 1.84764 1.22926 1.01547 0.92408 1.01799 1.23001 1.01840 0.96231 1.02185 0.92778 0.94312 0.91939 0.75252 0.81740 0.78830 0.77083 0.87763 0.89355 0.90408 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 0.92 43.54 24.85 68.60 1.70 45.24 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.24 -10.76 5.65 99.48 0.56 -10.20 16 7 C -0.48 -23.89 8.89 25.60 0.23 -23.66 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 9 C -0.04 -1.71 0.93 -52.93 -0.05 -1.76 16 10 C 0.16 6.46 5.35 86.38 0.46 6.93 16 11 N -0.69 -24.56 5.32 -466.05 -2.48 -27.04 16 12 C 0.55 19.89 7.75 86.76 0.67 20.56 16 13 O -0.56 -23.89 14.01 -3.90 -0.05 -23.95 16 14 C -0.19 -5.53 5.89 -19.97 -0.12 -5.65 16 15 C -0.03 -0.68 9.64 22.73 0.22 -0.46 16 16 C -0.16 -2.19 10.10 22.32 0.23 -1.97 16 17 C 0.14 2.22 11.17 84.71 0.95 3.16 16 18 N -0.51 -12.85 10.33 -185.58 -1.92 -14.77 16 19 C 0.20 6.10 7.31 85.05 0.62 6.72 16 20 Cl -0.02 -0.59 26.21 -2.72 -0.07 -0.66 16 21 C -0.15 -4.99 9.93 30.62 0.30 -4.69 16 22 C -0.19 -7.20 7.51 30.62 0.23 -6.97 16 23 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 24 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 25 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 26 H 0.41 13.08 6.30 -92.71 -0.58 12.50 16 27 H 0.17 3.00 6.54 -2.91 -0.02 2.98 16 28 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 29 H 0.21 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.08 3.09 7.09 -2.39 -0.02 3.07 16 33 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -69.35 296.03 2.11 -67.24 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.42 Total: 14.99 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 4.21 Total: -5.70 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.09 Total: -97.16 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.70 Total: 45.24 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.07 Total: -0.66 kcal Total: -69.35 2.11 -67.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404753277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.856 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds