Wall clock time and date at job start Tue Mar 31 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00236 * 2 1 4 4 H 1.48499 * 109.47031 * 270.00088 * 3 2 1 5 5 H 1.48504 * 109.46822 * 29.99924 * 3 2 1 6 6 H 1.48496 * 109.47134 * 149.99774 * 3 2 1 7 7 C 1.37883 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00621 * 169.41191 * 7 2 1 9 9 C 1.50705 * 119.99641 * 349.41211 * 7 2 1 10 10 C 1.53007 * 115.54992 * 325.11248 * 9 7 2 11 11 N 1.46500 * 109.47328 * 306.46621 * 10 9 7 12 12 C 1.34770 * 120.00200 * 183.71804 * 11 10 9 13 13 O 1.21558 * 119.99876 * 5.71318 * 12 11 10 14 14 C 1.47783 * 120.00182 * 185.44240 * 12 11 10 15 15 C 1.40085 * 120.54531 * 175.14651 * 14 12 11 16 16 C 1.38257 * 118.30782 * 179.97438 * 15 14 12 17 17 C 1.38552 * 119.29024 * 359.97438 * 16 15 14 18 18 Cl 1.73602 * 119.47446 * 180.02562 * 17 16 15 19 19 N 1.32043 * 121.04933 * 359.97438 * 17 16 15 20 20 C 1.31687 * 121.86089 * 359.76061 * 19 17 16 21 21 C 1.52994 * 117.49919 * 110.78461 * 9 7 2 22 22 C 1.52998 * 117.49577 * 179.44614 * 9 7 2 23 23 H 0.96995 * 120.00272 * 5.03323 * 1 2 3 24 24 H 1.09003 * 109.47104 * 186.46236 * 10 9 7 25 25 H 1.09000 * 109.46842 * 66.45817 * 10 9 7 26 26 H 0.97003 * 119.99856 * 3.70705 * 11 10 9 27 27 H 1.08005 * 120.84630 * 359.97438 * 15 14 12 28 28 H 1.07998 * 120.35371 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.71178 * 180.27310 * 20 19 17 30 30 H 1.09000 * 117.50073 * 214.99695 * 21 9 7 31 31 H 1.09001 * 117.49848 * 0.02619 * 21 9 7 32 32 H 1.08994 * 117.50550 * 359.97438 * 22 9 7 33 33 H 1.09011 * 117.49758 * 144.97069 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0707 -1.2020 -0.1724 9 6 1.2702 -2.4882 0.2387 10 6 0.1020 -2.4117 1.2239 11 7 0.5634 -1.8234 2.4838 12 6 -0.2799 -1.7254 3.5304 13 8 -1.3895 -2.2176 3.4651 14 6 0.1463 -1.0246 4.7597 15 6 -0.7534 -0.8274 5.8152 16 6 -0.3053 -0.1665 6.9439 17 6 1.0070 0.2749 6.9947 18 17 1.5748 1.1047 8.4099 19 7 1.8329 0.0737 5.9843 20 6 1.4536 -0.5549 4.8911 21 6 1.1376 -3.4537 -0.9407 22 6 2.0892 -3.7803 0.2130 23 1 -0.4850 0.8367 -0.0737 24 1 -0.2823 -3.4146 1.4104 25 1 -0.6891 -1.7920 0.8019 26 1 1.4759 -1.5045 2.5647 27 1 -1.7712 -1.1827 5.7489 28 1 -0.9711 0.0037 7.7770 29 1 2.1593 -0.7044 4.0874 30 1 0.2182 -4.0344 -1.0148 31 1 1.5819 -3.1530 -1.8896 32 1 3.1590 -3.6944 0.0226 33 1 1.7960 -4.5757 0.8982 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404755105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:32 Heat of formation + Delta-G solvation = 16.500086 kcal Electronic energy + Delta-G solvation = -19180.460767 eV Core-core repulsion = 16039.863509 eV Total energy + Delta-G solvation = -3140.597258 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50391 -38.62858 -36.85118 -36.65241 -33.44203 -32.66549 -32.28950 -31.18971 -26.45919 -25.54028 -24.05673 -23.47793 -21.30382 -20.10859 -19.40525 -17.99567 -17.00128 -16.85221 -16.03547 -15.01383 -14.90731 -14.73845 -14.65692 -14.12017 -13.78591 -13.40095 -13.15353 -12.68718 -12.50081 -11.98924 -11.74323 -11.56567 -11.50215 -11.11384 -10.87079 -10.57506 -10.34669 -10.08537 -10.05857 -9.67176 -9.31195 -9.19269 -9.10553 -8.91727 -8.36856 -8.01609 -6.16725 -4.27075 0.49506 1.03038 1.61731 3.06845 3.16142 3.26728 3.28123 3.73293 3.94362 4.22437 4.28905 4.67023 4.76242 4.83333 4.93274 5.20441 5.39082 5.42518 5.74711 5.92696 6.01529 6.22729 6.26158 6.45756 6.54013 6.62441 6.82127 6.98267 7.20250 7.35905 7.46121 7.51448 7.81745 8.22242 8.28753 8.72262 8.83819 9.34385 10.79997 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.005251 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.047581 B = 5331.115929 C = 6130.776014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.161 3.839 11 N -0.677 5.677 12 C 0.550 3.450 13 O -0.553 6.553 14 C -0.166 4.166 15 C -0.010 4.010 16 C -0.163 4.163 17 C 0.185 3.815 18 Cl -0.034 7.034 19 N -0.480 5.480 20 C 0.152 3.848 21 C -0.194 4.194 22 C -0.211 4.211 23 H 0.264 0.736 24 H 0.032 0.968 25 H 0.112 0.888 26 H 0.400 0.600 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 0.040 12.148 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.129 4.129 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.035 3.965 10 C 0.038 3.962 11 N -0.324 5.324 12 C 0.334 3.666 13 O -0.434 6.434 14 C -0.172 4.172 15 C -0.037 4.037 16 C -0.184 4.184 17 C 0.021 3.979 18 Cl -0.005 7.005 19 N -0.191 5.191 20 C -0.006 4.006 21 C -0.233 4.233 22 C -0.249 4.249 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.130 0.870 26 H 0.236 0.764 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.190 0.810 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.480 0.219 12.303 12.314 hybrid contribution 0.212 0.888 -0.107 0.919 sum 0.692 1.107 12.195 12.265 Atomic orbital electron populations 1.69828 1.05924 1.27101 1.47463 1.24973 0.94749 0.99058 0.94096 0.86671 0.80150 0.83323 0.78577 1.20456 1.20987 1.19399 1.20500 0.94129 0.88793 1.50413 0.91839 1.19184 0.94122 0.89127 0.94087 1.21115 0.98412 0.95596 0.81056 1.45768 1.14556 1.59737 1.12291 1.17771 0.85360 0.80652 0.82813 1.90723 1.21057 1.48935 1.82675 1.21403 0.95780 1.02688 0.97299 1.21741 1.00531 0.91541 0.89880 1.21797 0.94933 1.01216 1.00414 1.21847 0.90340 0.95686 0.90064 1.98403 1.90344 1.76294 1.35496 1.67008 1.37146 1.14562 1.00371 1.23051 0.93897 0.90021 0.93604 1.22920 0.99467 1.06517 0.94379 1.22978 0.96929 1.01929 1.03037 0.92512 0.94995 0.87036 0.76395 0.82498 0.83235 0.80963 0.91452 0.90127 0.90516 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.29 10.75 55.43 0.60 -21.70 16 2 C 0.08 1.87 5.13 -17.82 -0.09 1.78 16 3 Si 0.89 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.50 -12.14 8.27 -34.44 -0.28 -12.42 16 8 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 9 C 0.04 0.80 2.00 -155.66 -0.31 0.49 16 10 C 0.16 3.59 4.75 -4.04 -0.02 3.57 16 11 N -0.68 -13.54 5.23 -61.27 -0.32 -13.86 16 12 C 0.55 10.67 7.76 -12.36 -0.10 10.57 16 13 O -0.55 -12.25 16.43 5.31 0.09 -12.16 16 14 C -0.17 -2.65 5.89 -104.82 -0.62 -3.27 16 15 C -0.01 -0.14 9.71 -38.88 -0.38 -0.52 16 16 C -0.16 -1.90 9.86 -39.46 -0.39 -2.29 16 17 C 0.18 2.46 7.27 -17.34 -0.13 2.34 16 18 Cl -0.03 -0.39 29.10 -51.86 -1.51 -1.90 16 19 N -0.48 -7.27 10.32 -10.01 -0.10 -7.38 16 20 C 0.15 2.31 10.71 -17.13 -0.18 2.12 16 21 C -0.19 -4.10 9.96 -26.70 -0.27 -4.36 16 22 C -0.21 -4.20 9.92 -26.69 -0.26 -4.47 16 23 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 24 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 25 H 0.11 2.85 6.04 -51.93 -0.31 2.53 16 26 H 0.40 7.52 6.00 -40.82 -0.25 7.28 16 27 H 0.16 1.95 7.74 -52.48 -0.41 1.55 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.17 2.41 6.44 -52.49 -0.34 2.07 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -27.39 305.00 -8.09 -35.47 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.38 Total: 9.00 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.03 Total: -6.46 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.17 Total: -42.94 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.39 -8.09 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404755105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.971 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds