Wall clock time and date at job start Tue Mar 31 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48494 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46782 * 299.99497 * 3 2 1 6 6 H 1.48500 * 109.47397 * 59.99423 * 3 2 1 7 7 C 1.37875 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00179 * 185.10996 * 7 2 1 9 9 C 1.50702 * 120.00130 * 5.10645 * 7 2 1 10 10 C 1.53004 * 115.55007 * 275.18002 * 9 7 2 11 11 N 1.46502 * 109.47172 * 294.91664 * 10 9 7 12 12 C 1.34769 * 119.99931 * 184.98095 * 11 10 9 13 13 O 1.21521 * 119.99982 * 354.93608 * 12 11 10 14 14 C 1.48175 * 120.00209 * 174.93837 * 12 11 10 15 15 C 1.39252 * 119.72000 * 184.77524 * 14 12 11 16 16 C 1.38751 * 119.04049 * 179.71218 * 15 14 12 17 17 Cl 1.73600 * 120.76724 * 180.30474 * 16 15 14 18 18 C 1.38763 * 118.45751 * 0.55111 * 16 15 14 19 19 C 1.38496 * 119.33695 * 359.73183 * 18 16 15 20 20 N 1.31541 * 120.92141 * 359.97438 * 19 18 16 21 21 C 1.52998 * 117.49857 * 60.84903 * 9 7 2 22 22 C 1.52999 * 117.50043 * 129.50985 * 9 7 2 23 23 H 0.97002 * 119.99958 * 5.00728 * 1 2 3 24 24 H 1.09002 * 109.47006 * 174.91693 * 10 9 7 25 25 H 1.08999 * 109.47245 * 54.92153 * 10 9 7 26 26 H 0.96998 * 119.99711 * 5.25164 * 11 10 9 27 27 H 1.08002 * 120.47793 * 359.97438 * 15 14 12 28 28 H 1.08004 * 120.32812 * 179.75239 * 18 16 15 29 29 H 1.08004 * 119.53616 * 179.97438 * 19 18 16 30 30 H 1.09001 * 117.50064 * 215.00295 * 21 9 7 31 31 H 1.08999 * 117.49752 * 0.02688 * 21 9 7 32 32 H 1.09000 * 117.49609 * 359.97299 * 22 9 7 33 33 H 1.08998 * 117.50356 * 144.97846 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0838 9 6 1.2556 -2.4966 -0.1150 10 6 0.7139 -3.0652 1.1981 11 7 1.8326 -3.4224 2.0739 12 6 1.5981 -4.0380 3.2497 13 8 0.4561 -4.2141 3.6261 14 6 2.7325 -4.4999 4.0834 15 6 2.4843 -5.2228 5.2474 16 6 3.5573 -5.6537 6.0144 17 17 3.2998 -6.5648 7.4695 18 6 4.8408 -5.3350 5.5940 19 6 5.0118 -4.6072 4.4282 20 7 3.9764 -4.2165 3.7172 21 6 0.4244 -2.7239 -1.3793 22 6 1.7314 -3.4937 -1.1735 23 1 -0.4850 0.8369 -0.0733 24 1 0.1169 -3.9532 0.9907 25 1 0.0926 -2.3164 1.6894 26 1 2.7419 -3.2124 1.8093 27 1 1.4714 -5.4485 5.5466 28 1 5.6977 -5.6516 6.1701 29 1 6.0094 -4.3570 4.0983 30 1 -0.5082 -3.2784 -1.2757 31 1 0.4197 -1.9314 -2.1277 32 1 2.5859 -3.2073 -1.7866 33 1 1.6589 -4.5546 -0.9343 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404759237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:34 Heat of formation + Delta-G solvation = 14.014646 kcal Electronic energy + Delta-G solvation = -18790.874500 eV Core-core repulsion = 15650.169465 eV Total energy + Delta-G solvation = -3140.705035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61541 -38.66832 -37.00667 -36.67691 -33.53091 -32.29344 -31.96445 -31.62822 -26.79170 -25.42876 -24.04130 -23.66420 -21.22096 -20.28884 -19.45936 -17.96670 -17.02012 -16.40646 -15.92486 -15.18265 -15.07135 -14.89303 -14.63301 -14.07412 -14.00490 -13.81577 -13.12211 -12.72206 -12.46264 -12.43350 -11.78741 -11.61188 -11.37928 -11.05964 -10.90197 -10.51395 -10.29082 -10.13768 -9.75331 -9.72968 -9.46118 -9.44181 -8.95651 -8.49202 -8.33206 -8.11375 -6.08701 -4.17058 0.45603 0.80951 1.60877 2.88089 3.26073 3.35328 3.37956 3.52880 3.83345 4.15846 4.36940 4.54289 4.60648 4.74427 5.19583 5.21116 5.31115 5.38178 5.50568 5.66573 6.00530 6.22319 6.32416 6.44021 6.53514 6.69378 6.83420 7.08041 7.17968 7.39857 7.44876 7.56164 7.82150 8.22554 8.33356 8.71269 8.85495 9.50762 10.99792 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.004050 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.702875 B = 6912.023600 C = 7298.532038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.026 3.974 10 C 0.159 3.841 11 N -0.675 5.675 12 C 0.555 3.445 13 O -0.546 6.546 14 C 0.109 3.891 15 C -0.111 4.111 16 C -0.001 4.001 17 Cl -0.050 7.050 18 C -0.152 4.152 19 C 0.114 3.886 20 N -0.450 5.450 21 C -0.147 4.147 22 C -0.209 4.209 23 H 0.261 0.739 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.413 0.587 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.173 0.827 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 -10.859 10.147 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.036 3.964 11 N -0.322 5.322 12 C 0.337 3.663 13 O -0.425 6.425 14 C -0.030 4.030 15 C -0.132 4.132 16 C -0.035 4.035 17 Cl -0.021 7.021 18 C -0.173 4.173 19 C -0.045 4.045 20 N -0.161 5.161 21 C -0.185 4.185 22 C -0.246 4.246 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.249 0.751 27 H 0.176 0.824 28 H 0.167 0.833 29 H 0.190 0.810 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.342 -10.440 9.774 16.556 hybrid contribution 0.720 0.494 0.786 1.175 sum 9.062 -9.947 10.560 17.105 Atomic orbital electron populations 1.70013 1.05863 1.26879 1.48283 1.24973 0.94793 0.98963 0.94329 0.86593 0.80285 0.83887 0.77601 1.19638 1.20961 1.21062 1.20417 0.92677 0.88588 1.51875 0.91996 1.19028 0.98802 0.93974 0.85662 1.21150 0.86914 0.97499 0.90830 1.45893 1.12843 1.55594 1.17897 1.17750 0.86862 0.79727 0.81912 1.90767 1.21423 1.58394 1.71872 1.21497 0.91950 0.95930 0.93592 1.22070 1.00593 0.96799 0.93759 1.21219 0.94742 0.97214 0.90358 1.98399 1.96972 1.72239 1.34531 1.22301 0.96369 0.99970 0.98677 1.22900 0.98359 0.93064 0.90193 1.67673 0.98674 1.17998 1.31780 1.22496 0.92176 1.01171 1.02649 1.23019 0.98808 0.95627 1.07157 0.92933 0.93947 0.90550 0.75083 0.82405 0.83347 0.81046 0.91649 0.89749 0.90250 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.15 12.90 55.43 0.72 -23.43 16 2 C 0.07 1.94 5.40 -17.82 -0.10 1.85 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -12.82 8.58 -34.44 -0.30 -13.12 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.03 0.61 1.39 -155.66 -0.22 0.40 16 10 C 0.16 3.61 5.51 -4.04 -0.02 3.59 16 11 N -0.67 -13.67 5.47 -61.14 -0.33 -14.01 16 12 C 0.55 10.78 7.80 -12.18 -0.10 10.68 16 13 O -0.55 -11.96 16.34 5.35 0.09 -11.88 16 14 C 0.11 1.73 6.75 -83.02 -0.56 1.17 16 15 C -0.11 -1.50 9.45 -39.02 -0.37 -1.87 16 16 C 0.00 -0.01 6.37 -39.20 -0.25 -0.26 16 17 Cl -0.05 -0.49 29.02 -51.86 -1.50 -1.99 16 18 C -0.15 -1.39 9.94 -39.29 -0.39 -1.78 16 19 C 0.11 1.18 11.18 -17.58 -0.20 0.98 16 20 N -0.45 -6.43 9.55 -9.82 -0.09 -6.52 16 21 C -0.15 -3.32 9.41 -26.69 -0.25 -3.57 16 22 C -0.21 -4.33 9.96 -26.69 -0.27 -4.60 16 23 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 24 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 25 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 26 H 0.41 8.07 7.66 -40.82 -0.31 7.75 16 27 H 0.16 2.12 7.65 -52.49 -0.40 1.72 16 28 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -29.09 312.25 -8.09 -37.18 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.64 Total: 6.91 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.01 Total: -6.53 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.29 Total: -43.96 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.09 -8.09 -37.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404759237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.199 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds