Wall clock time and date at job start Tue Mar 31 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48494 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46782 * 299.99497 * 3 2 1 6 6 H 1.48500 * 109.47397 * 59.99423 * 3 2 1 7 7 C 1.37875 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00179 * 185.10996 * 7 2 1 9 9 C 1.50702 * 120.00130 * 5.10645 * 7 2 1 10 10 C 1.53004 * 115.55007 * 275.18002 * 9 7 2 11 11 N 1.46502 * 109.47172 * 294.91664 * 10 9 7 12 12 C 1.34769 * 119.99931 * 184.98095 * 11 10 9 13 13 O 1.21521 * 119.99982 * 354.93608 * 12 11 10 14 14 C 1.48175 * 120.00209 * 174.93837 * 12 11 10 15 15 C 1.39252 * 119.72000 * 184.77524 * 14 12 11 16 16 C 1.38751 * 119.04049 * 179.71218 * 15 14 12 17 17 Cl 1.73600 * 120.76724 * 180.30474 * 16 15 14 18 18 C 1.38763 * 118.45751 * 0.55111 * 16 15 14 19 19 C 1.38496 * 119.33695 * 359.73183 * 18 16 15 20 20 N 1.31541 * 120.92141 * 359.97438 * 19 18 16 21 21 C 1.52998 * 117.49857 * 60.84903 * 9 7 2 22 22 C 1.52999 * 117.50043 * 129.50985 * 9 7 2 23 23 H 0.97002 * 119.99958 * 5.00728 * 1 2 3 24 24 H 1.09002 * 109.47006 * 174.91693 * 10 9 7 25 25 H 1.08999 * 109.47245 * 54.92153 * 10 9 7 26 26 H 0.96998 * 119.99711 * 5.25164 * 11 10 9 27 27 H 1.08002 * 120.47793 * 359.97438 * 15 14 12 28 28 H 1.08004 * 120.32812 * 179.75239 * 18 16 15 29 29 H 1.08004 * 119.53616 * 179.97438 * 19 18 16 30 30 H 1.09001 * 117.50064 * 215.00295 * 21 9 7 31 31 H 1.08999 * 117.49752 * 0.02688 * 21 9 7 32 32 H 1.09000 * 117.49609 * 359.97299 * 22 9 7 33 33 H 1.08998 * 117.50356 * 144.97846 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0838 9 6 1.2556 -2.4966 -0.1150 10 6 0.7139 -3.0652 1.1981 11 7 1.8326 -3.4224 2.0739 12 6 1.5981 -4.0380 3.2497 13 8 0.4561 -4.2141 3.6261 14 6 2.7325 -4.4999 4.0834 15 6 2.4843 -5.2228 5.2474 16 6 3.5573 -5.6537 6.0144 17 17 3.2998 -6.5648 7.4695 18 6 4.8408 -5.3350 5.5940 19 6 5.0118 -4.6072 4.4282 20 7 3.9764 -4.2165 3.7172 21 6 0.4244 -2.7239 -1.3793 22 6 1.7314 -3.4937 -1.1735 23 1 -0.4850 0.8369 -0.0733 24 1 0.1169 -3.9532 0.9907 25 1 0.0926 -2.3164 1.6894 26 1 2.7419 -3.2124 1.8093 27 1 1.4714 -5.4485 5.5466 28 1 5.6977 -5.6516 6.1701 29 1 6.0094 -4.3570 4.0983 30 1 -0.5082 -3.2784 -1.2757 31 1 0.4197 -1.9314 -2.1277 32 1 2.5859 -3.2073 -1.7866 33 1 1.6589 -4.5546 -0.9343 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404759237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:34 Heat of formation + Delta-G solvation = -4.071703 kcal Electronic energy + Delta-G solvation = -18791.658783 eV Core-core repulsion = 15650.169465 eV Total energy + Delta-G solvation = -3141.489318 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71499 -40.10916 -38.46166 -37.82272 -35.12985 -33.97411 -33.28107 -32.63917 -28.44625 -27.33204 -25.26920 -24.60549 -22.96431 -21.69932 -21.27718 -19.34126 -18.15739 -17.93757 -17.08254 -16.71993 -16.50039 -16.39403 -16.20473 -15.57273 -15.14732 -14.89007 -14.72007 -14.38684 -13.69590 -13.49409 -13.40307 -13.26031 -12.98646 -12.81112 -12.32941 -12.21180 -12.03798 -11.57716 -11.38082 -10.83164 -10.75024 -10.63978 -10.46572 -10.43736 -10.08851 -9.86288 -8.10162 -6.23030 -0.55084 -0.08808 0.76337 1.41691 1.45503 1.55074 1.62928 2.13952 2.44158 2.68787 3.08032 3.19417 3.49458 3.67865 3.68698 3.79658 4.20271 4.28234 4.41838 4.53882 4.59013 4.64012 4.71293 4.78339 4.98256 5.02216 5.27084 5.35940 5.50527 5.56919 5.65821 5.78514 6.36823 6.47290 6.76530 6.85193 7.17437 7.47192 8.98256 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.004050 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.702875 B = 6912.023600 C = 7298.532038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.174 3.826 11 N -0.676 5.676 12 C 0.553 3.447 13 O -0.581 6.581 14 C 0.082 3.918 15 C -0.115 4.115 16 C -0.005 4.005 17 Cl -0.036 7.036 18 C -0.123 4.123 19 C 0.117 3.883 20 N -0.472 5.472 21 C -0.155 4.155 22 C -0.177 4.177 23 H 0.259 0.741 24 H 0.044 0.956 25 H 0.034 0.966 26 H 0.417 0.583 27 H 0.148 0.852 28 H 0.192 0.808 29 H 0.213 0.787 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.342 -11.875 11.093 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.050 3.950 11 N -0.324 5.324 12 C 0.338 3.662 13 O -0.462 6.462 14 C -0.055 4.055 15 C -0.137 4.137 16 C -0.040 4.040 17 Cl -0.006 7.006 18 C -0.143 4.143 19 C -0.043 4.043 20 N -0.184 5.184 21 C -0.193 4.193 22 C -0.214 4.214 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.254 0.746 27 H 0.166 0.834 28 H 0.209 0.791 29 H 0.229 0.771 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.437 -11.468 10.719 19.422 hybrid contribution -0.136 0.719 0.601 0.947 sum 11.301 -10.748 11.320 19.271 Atomic orbital electron populations 1.70131 1.07177 1.27345 1.49773 1.25677 0.95457 1.01996 0.94396 0.85664 0.79578 0.80206 0.77151 1.18558 1.20748 1.21627 1.20698 0.92804 0.89657 1.50856 0.92004 1.19054 1.00006 0.94515 0.86279 1.20736 0.87301 0.96221 0.90699 1.45768 1.12161 1.56215 1.18227 1.18332 0.87732 0.78511 0.81579 1.90727 1.23338 1.59569 1.72590 1.20826 0.91542 0.98786 0.94373 1.21990 1.01187 0.96926 0.93597 1.21307 0.94828 0.97226 0.90621 1.98410 1.97026 1.71763 1.33439 1.22785 0.96694 0.97128 0.97737 1.23622 0.98729 0.92008 0.89951 1.67590 0.98727 1.18923 1.33162 1.22437 0.93582 1.01438 1.01835 1.23002 0.97647 0.96128 1.04586 0.93211 0.93786 0.94719 0.74633 0.83378 0.79127 0.77086 0.90935 0.91573 0.89469 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.47 12.90 21.45 0.28 -51.19 16 2 C 0.03 1.36 5.40 84.65 0.46 1.81 16 3 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.50 -26.03 8.58 25.60 0.22 -25.81 16 8 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 9 C 0.00 0.10 1.39 -52.93 -0.07 0.03 16 10 C 0.17 8.20 5.51 86.38 0.48 8.67 16 11 N -0.68 -28.04 5.47 -465.64 -2.55 -30.59 16 12 C 0.55 22.18 7.80 86.89 0.68 22.86 16 13 O -0.58 -26.71 16.34 -3.78 -0.06 -26.77 16 14 C 0.08 2.57 6.75 41.89 0.28 2.85 16 15 C -0.12 -3.05 9.45 22.64 0.21 -2.84 16 16 C -0.01 -0.10 6.37 22.52 0.14 0.05 16 17 Cl -0.04 -0.60 29.02 -2.72 -0.08 -0.67 16 18 C -0.12 -1.72 9.94 22.46 0.22 -1.50 16 19 C 0.12 1.97 11.18 84.80 0.95 2.91 16 20 N -0.47 -12.71 9.55 -184.97 -1.77 -14.47 16 21 C -0.15 -7.04 9.41 30.62 0.29 -6.75 16 22 C -0.18 -7.10 9.96 30.62 0.30 -6.80 16 23 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 24 H 0.04 2.01 8.09 -2.39 -0.02 1.99 16 25 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.42 16.41 7.66 -92.71 -0.71 15.70 16 27 H 0.15 4.10 7.65 -2.91 -0.02 4.08 16 28 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 29 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -65.03 312.25 2.44 -62.59 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.43 Total: 21.03 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 4.16 Total: -4.50 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -4.04 Total: -96.25 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Total: -65.03 2.44 -62.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404759237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.517 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds