Wall clock time and date at job start Tue Mar 31 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00344 * 2 1 4 4 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47212 * 119.99777 * 3 2 1 6 6 H 1.48498 * 109.47212 * 240.00180 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21515 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.48163 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.39273 * 119.71759 * 179.97438 * 14 12 11 16 16 C 1.38621 * 119.08836 * 179.97438 * 15 14 12 17 17 C 1.38558 * 118.51168 * 359.97438 * 16 15 14 18 18 C 1.38729 * 119.34003 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.56583 * 179.97438 * 18 17 16 20 20 N 1.31626 * 120.86579 * 359.71050 * 18 17 16 21 21 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 22 22 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 23 23 H 0.97004 * 120.00131 * 175.40177 * 1 2 3 24 24 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 25 25 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 26 26 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 27 27 H 1.08004 * 120.45041 * 359.97438 * 15 14 12 28 28 H 1.08007 * 120.74478 * 180.02562 * 16 15 14 29 29 H 1.07998 * 120.33457 * 179.97438 * 17 16 15 30 30 H 1.08998 * 117.49575 * 0.02562 * 21 9 7 31 31 H 1.08997 * 117.50012 * 145.01699 * 21 9 7 32 32 H 1.09003 * 117.50343 * 214.97736 * 22 9 7 33 33 H 1.08997 * 117.49643 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3544 -4.3140 3.5031 14 6 2.5971 -4.3195 4.1680 15 6 2.3140 -4.9587 5.3726 16 6 3.3528 -5.2422 6.2455 17 6 4.6394 -4.8770 5.8833 18 6 4.8491 -4.2428 4.6675 19 17 6.4586 -3.7821 4.2081 20 7 3.8445 -3.9904 3.8553 21 6 1.7685 -3.4728 -1.2214 22 6 0.4684 -2.6991 -1.4543 23 1 -0.4850 -0.8374 -0.0673 24 1 -0.0008 -2.3646 1.5812 25 1 0.1322 -3.9993 0.8898 26 1 2.6774 -3.1487 1.8351 27 1 1.2989 -5.2298 5.6230 28 1 3.1636 -5.7374 7.1866 29 1 5.4706 -5.0833 6.5413 30 1 2.6422 -3.1764 -1.8019 31 1 1.6882 -4.5377 -1.0033 32 1 -0.4668 -3.2553 -1.3895 33 1 0.4862 -1.8934 -2.1882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404766069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:56 Heat of formation + Delta-G solvation = 9.811092 kcal Electronic energy + Delta-G solvation = -18976.116955 eV Core-core repulsion = 15835.229640 eV Total energy + Delta-G solvation = -3140.887315 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65623 -38.76979 -37.00913 -36.71655 -33.73448 -32.70868 -31.91002 -31.33691 -26.84503 -24.97490 -24.20847 -23.54492 -21.39383 -20.39710 -19.69330 -18.06475 -17.13209 -16.67722 -16.11603 -15.30390 -15.23081 -15.12620 -14.28734 -14.03677 -13.74886 -13.69366 -13.14598 -12.78844 -12.41611 -12.29067 -11.92483 -11.66802 -11.47367 -10.95517 -10.80380 -10.49908 -10.30846 -10.26081 -10.12559 -9.77155 -9.48917 -9.21925 -8.72062 -8.49038 -8.41425 -8.24811 -6.38984 -4.14592 0.41874 0.84655 1.59734 2.80754 3.42866 3.43313 3.45611 3.62285 3.77193 4.15630 4.48449 4.54296 4.66619 4.75157 5.04180 5.09449 5.25620 5.30560 5.62449 5.77478 5.82492 6.12679 6.14987 6.22431 6.33580 6.53507 6.61061 6.84237 7.02744 7.15800 7.22031 7.36413 8.13067 8.17910 8.36304 8.62738 8.82571 9.61178 11.00356 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.005255 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.368130 B = 5327.049703 C = 6110.324810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.030 3.970 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.576 4.576 8 H 0.055 0.945 9 C 0.004 3.996 10 C 0.155 3.845 11 N -0.672 5.672 12 C 0.556 3.444 13 O -0.547 6.547 14 C 0.113 3.887 15 C -0.114 4.114 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.174 3.826 19 Cl -0.027 7.027 20 N -0.449 5.449 21 C -0.193 4.193 22 C -0.170 4.170 23 H 0.275 0.725 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.415 0.585 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 -10.266 11.191 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.003 3.997 10 C 0.032 3.968 11 N -0.320 5.320 12 C 0.339 3.661 13 O -0.426 6.426 14 C -0.026 4.026 15 C -0.135 4.135 16 C -0.095 4.095 17 C -0.162 4.162 18 C 0.007 3.993 19 Cl 0.002 6.998 20 N -0.163 5.163 21 C -0.230 4.230 22 C -0.209 4.209 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.252 0.748 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.501 -8.340 10.538 15.903 hybrid contribution 0.727 -1.882 0.492 2.076 sum 9.228 -10.222 11.031 17.644 Atomic orbital electron populations 1.70744 1.06810 1.31632 1.44239 1.25764 0.96495 1.02292 0.93095 0.83594 0.74981 0.75467 0.76614 1.20800 1.21411 1.21387 1.21199 0.94300 0.89572 1.56248 0.92715 1.19314 0.99161 0.95661 0.85588 1.21163 0.88046 0.97668 0.89970 1.45828 1.13417 1.55571 1.17166 1.17775 0.86797 0.79573 0.81944 1.90757 1.20516 1.55117 1.76202 1.21346 0.89919 0.96700 0.94675 1.22258 1.01849 0.96372 0.93034 1.21616 0.91305 0.96862 0.99699 1.22026 0.99032 0.99155 0.96012 1.21650 0.88443 0.97633 0.91550 1.98422 1.17358 1.90996 1.93061 1.66935 0.98970 1.16945 1.33417 1.22902 0.97941 0.95540 1.06618 1.22751 0.93334 1.02173 1.02600 0.91349 0.91403 0.93671 0.74831 0.82601 0.83056 0.83324 0.89942 0.91396 0.91254 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.57 55.43 0.75 -25.34 16 2 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 3 Si 1.07 24.67 29.91 -169.99 -5.08 19.58 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.58 -15.27 8.44 -34.44 -0.29 -15.56 16 8 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.00 0.09 0.99 -155.66 -0.15 -0.07 16 10 C 0.15 3.52 5.43 -4.04 -0.02 3.50 16 11 N -0.67 -14.03 5.45 -61.15 -0.33 -14.36 16 12 C 0.56 10.89 7.81 -12.18 -0.10 10.80 16 13 O -0.55 -11.79 16.32 5.35 0.09 -11.70 16 14 C 0.11 1.81 6.75 -83.01 -0.56 1.25 16 15 C -0.11 -1.41 9.63 -39.06 -0.38 -1.78 16 16 C -0.07 -0.62 10.17 -39.32 -0.40 -1.02 16 17 C -0.14 -1.34 9.88 -39.28 -0.39 -1.73 16 18 C 0.17 2.25 7.27 -17.46 -0.13 2.12 16 19 Cl -0.03 -0.32 29.11 -51.86 -1.51 -1.83 16 20 N -0.45 -7.13 9.52 -6.94 -0.07 -7.20 16 21 C -0.19 -4.07 9.96 -26.69 -0.27 -4.34 16 22 C -0.17 -3.82 8.74 -26.69 -0.23 -4.05 16 23 H 0.28 7.90 6.19 -40.82 -0.25 7.65 16 24 H 0.07 1.72 7.82 -51.93 -0.41 1.32 16 25 H 0.05 0.99 8.11 -51.93 -0.42 0.56 16 26 H 0.41 8.63 7.55 -40.82 -0.31 8.32 16 27 H 0.16 1.79 7.64 -52.48 -0.40 1.39 16 28 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 29 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -30.55 309.45 -8.03 -38.58 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.53 Total: 7.75 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.01 Total: -10.15 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.35 Total: -46.89 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.55 -8.03 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404766069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.395 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds