Wall clock time and date at job start Tue Mar 31 2020 01:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00344 * 2 1 4 4 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47212 * 119.99777 * 3 2 1 6 6 H 1.48498 * 109.47212 * 240.00180 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21515 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.48163 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.39273 * 119.71759 * 179.97438 * 14 12 11 16 16 C 1.38621 * 119.08836 * 179.97438 * 15 14 12 17 17 C 1.38558 * 118.51168 * 359.97438 * 16 15 14 18 18 C 1.38729 * 119.34003 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.56583 * 179.97438 * 18 17 16 20 20 N 1.31626 * 120.86579 * 359.71050 * 18 17 16 21 21 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 22 22 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 23 23 H 0.97004 * 120.00131 * 175.40177 * 1 2 3 24 24 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 25 25 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 26 26 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 27 27 H 1.08004 * 120.45041 * 359.97438 * 15 14 12 28 28 H 1.08007 * 120.74478 * 180.02562 * 16 15 14 29 29 H 1.07998 * 120.33457 * 179.97438 * 17 16 15 30 30 H 1.08998 * 117.49575 * 0.02562 * 21 9 7 31 31 H 1.08997 * 117.50012 * 145.01699 * 21 9 7 32 32 H 1.09003 * 117.50343 * 214.97736 * 22 9 7 33 33 H 1.08997 * 117.49643 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3544 -4.3140 3.5031 14 6 2.5971 -4.3195 4.1680 15 6 2.3140 -4.9587 5.3726 16 6 3.3528 -5.2422 6.2455 17 6 4.6394 -4.8770 5.8833 18 6 4.8491 -4.2428 4.6675 19 17 6.4586 -3.7821 4.2081 20 7 3.8445 -3.9904 3.8553 21 6 1.7685 -3.4728 -1.2214 22 6 0.4684 -2.6991 -1.4543 23 1 -0.4850 -0.8374 -0.0673 24 1 -0.0008 -2.3646 1.5812 25 1 0.1322 -3.9993 0.8898 26 1 2.6774 -3.1487 1.8351 27 1 1.2989 -5.2298 5.6230 28 1 3.1636 -5.7374 7.1866 29 1 5.4706 -5.0833 6.5413 30 1 2.6422 -3.1764 -1.8019 31 1 1.6882 -4.5377 -1.0033 32 1 -0.4668 -3.2553 -1.3895 33 1 0.4862 -1.8934 -2.1882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404766069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:56 Heat of formation + Delta-G solvation = -9.909729 kcal Electronic energy + Delta-G solvation = -18976.972113 eV Core-core repulsion = 15835.229640 eV Total energy + Delta-G solvation = -3141.742474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77211 -40.22110 -38.76759 -37.67425 -35.29022 -33.98921 -33.72732 -32.35648 -28.46054 -26.98384 -25.42653 -24.51194 -23.15098 -21.80071 -21.58900 -19.49246 -18.46657 -18.19487 -17.09619 -16.71421 -16.62889 -16.43438 -15.83635 -15.62226 -15.37169 -14.90290 -14.63126 -14.43245 -14.22357 -13.66804 -13.19260 -12.87034 -12.76547 -12.65222 -12.39366 -12.25924 -11.97396 -11.72747 -11.48054 -11.14314 -10.78084 -10.60420 -10.47774 -10.34214 -10.23602 -9.97164 -8.55196 -6.30258 -0.57716 -0.03196 0.67692 1.53640 1.55540 1.59847 1.78737 2.04046 2.56806 2.61375 3.01145 3.21221 3.28699 3.67825 3.79296 3.89481 4.00229 4.14092 4.31206 4.32118 4.40945 4.49156 4.73604 4.80864 4.85099 4.94629 5.02751 5.27887 5.31849 5.38311 5.44702 6.11863 6.22905 6.26767 6.60127 6.68723 7.05575 7.51819 8.84834 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.005255 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.368130 B = 5327.049703 C = 6110.324810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.017 4.017 3 Si 1.106 2.894 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.578 4.578 8 H 0.048 0.952 9 C -0.023 4.023 10 C 0.170 3.830 11 N -0.679 5.679 12 C 0.555 3.445 13 O -0.575 6.575 14 C 0.078 3.922 15 C -0.110 4.110 16 C -0.048 4.048 17 C -0.117 4.117 18 C 0.155 3.845 19 Cl -0.026 7.026 20 N -0.482 5.482 21 C -0.166 4.166 22 C -0.170 4.170 23 H 0.265 0.735 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.414 0.586 27 H 0.161 0.839 28 H 0.204 0.796 29 H 0.191 0.809 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 -11.637 13.146 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.217 4.217 3 Si 0.929 3.071 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.615 4.615 8 H 0.066 0.934 9 C -0.024 4.024 10 C 0.046 3.954 11 N -0.327 5.327 12 C 0.340 3.660 13 O -0.456 6.456 14 C -0.060 4.060 15 C -0.131 4.131 16 C -0.073 4.073 17 C -0.138 4.138 18 C -0.013 4.013 19 Cl 0.002 6.998 20 N -0.196 5.196 21 C -0.204 4.204 22 C -0.209 4.209 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.250 0.750 27 H 0.179 0.821 28 H 0.221 0.779 29 H 0.208 0.792 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.435 -9.734 12.492 18.966 hybrid contribution 0.215 -1.543 -0.024 1.558 sum 10.650 -11.277 12.469 19.901 Atomic orbital electron populations 1.70842 1.07706 1.31117 1.46779 1.26969 0.96579 1.05571 0.92621 0.83057 0.74225 0.72126 0.77643 1.21299 1.20300 1.19561 1.21438 0.94120 0.90910 1.55042 0.93418 1.19330 1.00621 0.95903 0.86541 1.20788 0.88131 0.96753 0.89737 1.45784 1.12648 1.56487 1.17782 1.18379 0.87685 0.78189 0.81739 1.90716 1.22063 1.56090 1.76747 1.20831 0.89141 1.00400 0.95595 1.22459 1.03343 0.95245 0.92068 1.22170 0.89706 0.95107 1.00362 1.22548 1.00632 0.96026 0.94546 1.22040 0.87924 0.98650 0.92668 1.98419 1.16936 1.91128 1.93270 1.66694 0.99506 1.18201 1.35236 1.22902 0.97112 0.96215 1.04134 1.22696 0.94775 1.02164 1.01226 0.92405 0.95071 0.93030 0.74952 0.82112 0.77938 0.79174 0.89688 0.89086 0.89716 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.57 21.45 0.29 -55.10 16 2 C -0.02 -0.93 5.39 84.66 0.46 -0.48 16 3 Si 1.11 50.16 29.91 68.60 2.05 52.21 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.58 -31.20 8.44 25.60 0.22 -30.98 16 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 9 C -0.02 -1.12 0.99 -52.93 -0.05 -1.17 16 10 C 0.17 8.02 5.43 86.38 0.47 8.48 16 11 N -0.68 -29.27 5.45 -465.66 -2.54 -31.81 16 12 C 0.55 22.30 7.81 86.88 0.68 22.98 16 13 O -0.58 -25.52 16.32 -3.76 -0.06 -25.59 16 14 C 0.08 2.47 6.75 41.89 0.28 2.75 16 15 C -0.11 -2.48 9.63 22.61 0.22 -2.26 16 16 C -0.05 -0.63 10.17 22.44 0.23 -0.41 16 17 C -0.12 -1.71 9.88 22.46 0.22 -1.49 16 18 C 0.15 3.66 7.27 84.84 0.62 4.28 16 19 Cl -0.03 -0.57 29.11 -2.72 -0.08 -0.65 16 20 N -0.48 -15.05 9.52 -175.86 -1.67 -16.72 16 21 C -0.17 -6.91 9.96 30.62 0.30 -6.60 16 22 C -0.17 -7.69 8.74 30.62 0.27 -7.43 16 23 H 0.27 15.87 6.19 -92.71 -0.57 15.29 16 24 H 0.03 1.67 7.82 -2.39 -0.02 1.65 16 25 H 0.05 2.31 8.11 -2.39 -0.02 2.29 16 26 H 0.41 17.78 7.55 -92.71 -0.70 17.08 16 27 H 0.16 3.40 7.64 -2.91 -0.02 3.38 16 28 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 29 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -69.29 309.45 2.54 -66.75 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.64 Total: 23.23 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 3.91 Total: -12.32 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.92 Total: -103.63 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.59 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -69.29 2.54 -66.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404766069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.842 kcal (2) G-P(sol) polarization free energy of solvation -69.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds