Wall clock time and date at job start Tue Mar 31 2020 01:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48495 * 109.47281 * 269.99637 * 3 2 1 5 5 H 1.48495 * 109.47180 * 30.00211 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99897 * 3 2 1 7 7 C 1.38943 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00414 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99820 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00021 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.33033 * 299.78162 * 12 10 9 14 14 C 1.53069 * 109.40226 * 180.02562 * 12 10 9 15 15 C 1.53350 * 108.42392 * 288.76995 * 14 12 10 16 16 C 1.52919 * 108.67466 * 292.46941 * 15 14 12 17 17 H 1.09002 * 109.29860 * 290.43826 * 16 15 14 18 18 C 1.53007 * 109.30109 * 170.85486 * 16 15 14 19 19 F 1.39896 * 109.46694 * 59.58417 * 18 16 15 20 20 F 1.39900 * 109.46877 * 179.58216 * 18 16 15 21 21 F 1.39896 * 109.46924 * 299.58542 * 18 16 15 22 22 N 1.45753 * 110.48792 * 50.74911 * 16 15 14 23 23 C 1.33352 * 124.10676 * 340.93097 * 22 16 15 24 24 O 1.21288 * 118.24288 * 182.20363 * 23 22 16 25 25 H 0.96992 * 120.00179 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99852 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.67729 * 169.03704 * 14 12 10 28 28 H 1.09003 * 109.70744 * 48.51830 * 14 12 10 29 29 H 1.09000 * 109.60540 * 172.70751 * 15 14 12 30 30 H 1.09002 * 109.73681 * 52.30562 * 15 14 12 31 31 H 0.97006 * 117.94476 * 160.92230 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2439 -4.8629 0.0010 13 1 0.6200 -4.9197 0.8930 14 6 2.2399 -6.0252 0.0031 15 6 2.9129 -6.0891 -1.3734 16 6 1.8672 -6.4992 -2.4111 17 1 1.5875 -7.5401 -2.2488 18 6 2.4599 -6.3475 -3.8135 19 9 3.5922 -7.1606 -3.9316 20 9 1.5091 -6.7308 -4.7655 21 9 2.8203 -5.0125 -4.0256 22 7 0.6815 -5.6588 -2.3001 23 6 0.3750 -4.9368 -1.2216 24 8 -0.6608 -4.3058 -1.2287 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 1.7134 -6.9594 0.1978 28 1 2.9941 -5.8616 0.7729 29 1 3.7168 -6.8250 -1.3536 30 1 3.3191 -5.1108 -1.6304 31 1 0.0776 -5.6223 -3.0583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408004915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:58 Heat of formation + Delta-G solvation = -234.284005 kcal Electronic energy + Delta-G solvation = -23036.314024 eV Core-core repulsion = 18902.276047 eV Total energy + Delta-G solvation = -4134.037977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.22130 -47.76649 -47.62705 -40.57854 -37.86449 -36.64743 -34.09950 -32.79964 -31.31685 -30.49156 -27.04772 -24.84038 -23.24220 -22.68164 -20.62021 -18.92424 -18.54588 -18.38777 -18.21177 -17.64551 -16.98734 -16.17114 -15.73721 -14.75851 -14.67884 -14.60012 -14.23618 -14.20714 -14.10622 -14.02368 -13.80001 -13.78852 -13.49140 -13.31148 -12.84013 -12.39039 -12.07509 -11.55874 -11.39639 -11.19774 -11.00683 -10.93322 -10.41111 -10.25148 -9.68271 -9.53407 -9.32809 -8.49697 -8.02036 -6.44539 -3.86698 2.38241 2.78140 2.94162 3.16460 3.25151 3.30448 3.56700 3.74207 3.83654 4.12597 4.14033 4.56184 4.65198 4.73846 4.84585 4.98238 5.16799 5.28766 5.62790 5.70599 5.86648 6.14367 6.20961 6.39790 6.65730 7.13617 7.50842 7.98605 8.23646 8.53160 9.10097 9.48247 9.96317 10.71346 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.005502 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.085977 B = 5087.655941 C = 5246.336413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.541 5.541 10 C 0.438 3.562 11 O -0.589 6.589 12 C -0.120 4.120 13 H 0.120 0.880 14 C -0.091 4.091 15 C -0.140 4.140 16 C 0.107 3.893 17 H 0.116 0.884 18 C 0.440 3.560 19 F -0.177 7.177 20 F -0.184 7.184 21 F -0.169 7.169 22 N -0.716 5.716 23 C 0.539 3.461 24 O -0.525 6.525 25 H 0.274 0.726 26 H 0.402 0.598 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 -15.069 -4.354 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.175 5.175 10 C 0.222 3.778 11 O -0.475 6.475 12 C -0.145 4.145 13 H 0.138 0.862 14 C -0.129 4.129 15 C -0.178 4.178 16 C -0.001 4.001 17 H 0.134 0.866 18 C 0.384 3.616 19 F -0.158 7.158 20 F -0.166 7.166 21 F -0.150 7.150 22 N -0.371 5.371 23 C 0.325 3.675 24 O -0.399 6.399 25 H 0.084 0.916 26 H 0.237 0.763 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.481 -14.520 -4.165 15.308 hybrid contribution -0.369 0.789 -0.740 1.143 sum 2.112 -13.731 -4.905 14.733 Atomic orbital electron populations 1.69661 1.06027 1.28464 1.48395 1.25371 0.95634 0.99991 0.96722 0.85835 0.79247 0.80559 0.78502 1.20274 1.20763 1.19241 1.19757 0.93432 0.82107 1.48372 0.87638 1.41998 1.10089 1.04464 1.60979 1.18996 0.87821 0.83881 0.87059 1.90509 1.13048 1.86433 1.57553 1.21444 0.98007 0.98116 0.96946 0.86182 1.21351 0.98288 0.95917 0.97364 1.22100 0.96154 1.05905 0.93631 1.22195 0.88880 0.98241 0.90796 0.86602 1.20987 0.76682 0.74507 0.89383 1.93188 1.52819 1.73177 1.96623 1.93182 1.64360 1.91096 1.67956 1.93268 1.91913 1.34154 1.95675 1.45317 1.24453 1.48171 1.19155 1.19965 0.86089 0.77293 0.84110 1.90822 1.25365 1.41936 1.81806 0.91582 0.76334 0.91110 0.88503 0.88682 0.87395 0.76006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 13.05 55.50 0.72 -24.21 16 2 C 0.03 0.72 5.50 -17.47 -0.10 0.63 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.31 -8.65 9.68 -14.94 -0.14 -8.80 16 8 H 0.11 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.54 -14.20 5.18 -10.97 -0.06 -14.26 16 10 C 0.44 10.14 6.72 -10.99 -0.07 10.07 16 11 O -0.59 -14.82 13.94 5.55 0.08 -14.74 16 12 C -0.12 -2.09 2.84 -93.15 -0.26 -2.35 16 13 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 14 C -0.09 -1.20 5.14 -26.51 -0.14 -1.34 16 15 C -0.14 -1.80 4.87 -26.59 -0.13 -1.93 16 16 C 0.11 1.21 3.05 -68.37 -0.21 1.00 16 17 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 18 C 0.44 5.34 2.79 37.16 0.10 5.45 16 19 F -0.18 -2.01 16.95 2.25 0.04 -1.97 16 20 F -0.18 -2.15 16.83 2.25 0.04 -2.11 16 21 F -0.17 -2.61 16.57 2.25 0.04 -2.57 16 22 N -0.72 -10.01 5.04 -54.85 -0.28 -10.29 16 23 C 0.54 9.52 6.85 -11.87 -0.08 9.44 16 24 O -0.52 -11.20 16.88 5.55 0.09 -11.10 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.40 10.75 6.96 -40.82 -0.28 10.46 16 27 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.10 1.33 7.71 -51.93 -0.40 0.93 16 29 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.11 1.83 5.81 -51.93 -0.30 1.53 16 31 H 0.40 5.27 8.24 -40.82 -0.34 4.93 16 LS Contribution 279.42 15.07 4.21 4.21 Total: -1.00 -32.18 279.42 -3.69 -35.87 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -2.52 Total: 12.90 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -1.03 Total: 12.17 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.39 Total: -48.76 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.17 Total: -25.84 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.18 -3.69 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408004915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.414 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds