Wall clock time and date at job start Tue Mar 31 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48495 * 109.47281 * 269.99637 * 3 2 1 5 5 H 1.48495 * 109.47180 * 30.00211 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99897 * 3 2 1 7 7 C 1.38943 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00414 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99820 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00021 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.33033 * 299.78162 * 12 10 9 14 14 C 1.53069 * 109.40226 * 180.02562 * 12 10 9 15 15 C 1.53350 * 108.42392 * 288.76995 * 14 12 10 16 16 C 1.52919 * 108.67466 * 292.46941 * 15 14 12 17 17 H 1.09002 * 109.29860 * 290.43826 * 16 15 14 18 18 C 1.53007 * 109.30109 * 170.85486 * 16 15 14 19 19 F 1.39896 * 109.46694 * 59.58417 * 18 16 15 20 20 F 1.39900 * 109.46877 * 179.58216 * 18 16 15 21 21 F 1.39896 * 109.46924 * 299.58542 * 18 16 15 22 22 N 1.45753 * 110.48792 * 50.74911 * 16 15 14 23 23 C 1.33352 * 124.10676 * 340.93097 * 22 16 15 24 24 O 1.21288 * 118.24288 * 182.20363 * 23 22 16 25 25 H 0.96992 * 120.00179 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99852 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.67729 * 169.03704 * 14 12 10 28 28 H 1.09003 * 109.70744 * 48.51830 * 14 12 10 29 29 H 1.09000 * 109.60540 * 172.70751 * 15 14 12 30 30 H 1.09002 * 109.73681 * 52.30562 * 15 14 12 31 31 H 0.97006 * 117.94476 * 160.92230 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2439 -4.8629 0.0010 13 1 0.6200 -4.9197 0.8930 14 6 2.2399 -6.0252 0.0031 15 6 2.9129 -6.0891 -1.3734 16 6 1.8672 -6.4992 -2.4111 17 1 1.5875 -7.5401 -2.2488 18 6 2.4599 -6.3475 -3.8135 19 9 3.5922 -7.1606 -3.9316 20 9 1.5091 -6.7308 -4.7655 21 9 2.8203 -5.0125 -4.0256 22 7 0.6815 -5.6588 -2.3001 23 6 0.3750 -4.9368 -1.2216 24 8 -0.6608 -4.3058 -1.2287 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 1.7134 -6.9594 0.1978 28 1 2.9941 -5.8616 0.7729 29 1 3.7168 -6.8250 -1.3536 30 1 3.3191 -5.1108 -1.6304 31 1 0.0776 -5.6223 -3.0583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408004915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:57 Heat of formation + Delta-G solvation = -259.124074 kcal Electronic energy + Delta-G solvation = -23037.391170 eV Core-core repulsion = 18902.276047 eV Total energy + Delta-G solvation = -4135.115124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.21294 -48.71406 -48.68356 -41.97603 -39.66749 -37.93812 -36.04566 -34.14014 -33.30837 -31.74173 -28.38580 -26.65059 -24.39891 -23.85445 -22.20477 -20.36528 -19.86931 -19.57874 -19.35304 -19.20300 -18.34403 -17.51572 -17.20279 -16.68701 -15.92237 -15.87406 -15.64236 -15.45567 -15.36410 -15.12222 -14.95495 -14.85386 -14.81727 -14.72156 -14.27468 -13.82033 -13.54440 -13.34798 -12.95827 -12.53235 -12.44483 -12.23486 -12.15586 -12.02526 -11.52505 -11.07434 -10.52585 -10.38574 -10.07254 -8.50188 -6.01631 1.12302 1.36473 1.38994 1.53006 1.61776 1.76076 2.02741 2.26670 2.61226 2.85420 3.01615 3.14012 3.19222 3.48841 3.61930 3.66871 3.92106 4.09421 4.33706 4.56737 4.64376 4.83536 5.11205 5.26310 5.36535 5.50966 5.86324 5.92565 6.49186 6.90742 7.03697 7.47967 7.98131 8.66694 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.005502 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.085977 B = 5087.655941 C = 5246.336413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.016 4.016 3 Si 0.999 3.001 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.339 4.339 8 H 0.089 0.911 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.609 6.609 12 C -0.117 4.117 13 H 0.136 0.864 14 C -0.086 4.086 15 C -0.142 4.142 16 C 0.109 3.891 17 H 0.173 0.827 18 C 0.441 3.559 19 F -0.169 7.169 20 F -0.180 7.180 21 F -0.195 7.195 22 N -0.705 5.705 23 C 0.539 3.461 24 O -0.569 6.569 25 H 0.279 0.721 26 H 0.396 0.604 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -17.075 -4.442 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.216 4.216 3 Si 0.821 3.179 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.107 0.893 9 N -0.199 5.199 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.142 4.142 13 H 0.154 0.846 14 C -0.123 4.123 15 C -0.180 4.180 16 C 0.003 3.997 17 H 0.190 0.810 18 C 0.386 3.614 19 F -0.150 7.150 20 F -0.162 7.162 21 F -0.176 7.176 22 N -0.359 5.359 23 C 0.326 3.674 24 O -0.447 6.447 25 H 0.088 0.912 26 H 0.231 0.769 27 H 0.141 0.859 28 H 0.109 0.891 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.956 -16.577 -4.276 17.374 hybrid contribution -0.429 1.259 -0.762 1.533 sum 2.527 -15.318 -5.039 16.322 Atomic orbital electron populations 1.69749 1.07289 1.29500 1.49257 1.26244 0.96503 1.03035 0.95849 0.84853 0.78053 0.76300 0.78663 1.19789 1.19429 1.18920 1.19806 0.92962 0.83787 1.50318 0.89346 1.42145 1.09749 1.05107 1.62915 1.20003 0.87931 0.85144 0.84026 1.90489 1.14408 1.87356 1.57392 1.21473 0.98819 0.96100 0.97771 0.84624 1.21468 0.97441 0.96030 0.97371 1.22099 0.97527 1.04592 0.93763 1.22564 0.87289 1.00241 0.89614 0.81027 1.21107 0.76939 0.73499 0.89894 1.93205 1.52488 1.72702 1.96622 1.93196 1.64141 1.90893 1.67923 1.93227 1.92207 1.36316 1.95873 1.45223 1.25185 1.47329 1.18125 1.19922 0.85480 0.77138 0.84835 1.90808 1.27321 1.43862 1.82751 0.91199 0.76948 0.85949 0.89112 0.85031 0.92077 0.75342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.85 13.05 21.66 0.28 -52.57 16 2 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 3 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.34 -19.81 9.68 84.04 0.81 -19.00 16 8 H 0.09 5.33 7.16 -2.91 -0.02 5.31 16 9 N -0.56 -30.64 5.18 -306.99 -1.59 -32.23 16 10 C 0.44 20.83 6.72 87.65 0.59 21.42 16 11 O -0.61 -31.23 13.94 -3.06 -0.04 -31.27 16 12 C -0.12 -3.92 2.84 -12.43 -0.04 -3.96 16 13 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 14 C -0.09 -1.96 5.14 30.73 0.16 -1.81 16 15 C -0.14 -3.22 4.87 30.68 0.15 -3.07 16 16 C 0.11 2.08 3.05 45.11 0.14 2.21 16 17 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 18 C 0.44 9.64 2.79 71.98 0.20 9.84 16 19 F -0.17 -3.34 16.95 44.97 0.76 -2.58 16 20 F -0.18 -3.74 16.83 44.97 0.76 -2.99 16 21 F -0.19 -5.93 16.57 44.97 0.75 -5.19 16 22 N -0.71 -18.23 5.04 -446.63 -2.25 -20.48 16 23 C 0.54 18.54 6.85 87.71 0.60 19.14 16 24 O -0.57 -24.49 16.88 -3.06 -0.05 -24.54 16 25 H 0.28 14.93 8.31 -92.71 -0.77 14.15 16 26 H 0.40 22.08 6.96 -92.70 -0.65 21.43 16 27 H 0.12 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.09 2.25 7.71 -2.39 -0.02 2.24 16 29 H 0.13 2.04 8.05 -2.39 -0.02 2.02 16 30 H 0.06 2.02 5.81 -2.39 -0.01 2.01 16 31 H 0.41 9.97 8.24 -92.70 -0.76 9.20 16 Total: -1.00 -73.65 279.42 3.53 -70.12 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.19 Total: 31.39 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 3.08 Total: 24.35 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -3.56 Total: -105.28 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -0.09 Total: -55.81 kcal Atomic # 9 Polarization: -13.02 SS G_CDS: 2.26 Total: -10.76 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.65 3.53 -70.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408004915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.001 kcal (2) G-P(sol) polarization free energy of solvation -73.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds