Wall clock time and date at job start Tue Mar 31 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00098 * 2 1 4 4 H 1.48495 * 109.47491 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00001 * 3 2 1 6 6 H 1.48501 * 109.47331 * 59.99809 * 3 2 1 7 7 C 1.38958 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99836 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00072 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99850 * 180.02562 * 10 9 7 13 13 H 1.08991 * 109.40377 * 59.82557 * 12 10 9 14 14 C 1.53069 * 109.39967 * 179.57008 * 12 10 9 15 15 C 1.53349 * 108.42464 * 71.22506 * 14 12 10 16 16 C 1.52918 * 108.67498 * 67.53105 * 15 14 12 17 17 H 1.09005 * 109.13189 * 69.45089 * 16 15 14 18 18 C 1.52997 * 109.30168 * 188.93311 * 16 15 14 19 19 F 1.39905 * 109.47157 * 181.03628 * 18 16 15 20 20 F 1.39900 * 109.47010 * 61.04019 * 18 16 15 21 21 F 1.39897 * 109.47422 * 301.03711 * 18 16 15 22 22 N 1.45753 * 110.48694 * 309.24926 * 16 15 14 23 23 C 1.33353 * 124.11183 * 19.07092 * 22 16 15 24 24 O 1.21273 * 118.24812 * 177.75574 * 23 22 16 25 25 H 0.96999 * 119.99982 * 359.97438 * 1 2 3 26 26 H 0.97008 * 120.00054 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.67448 * 190.95976 * 14 12 10 28 28 H 1.09006 * 109.67337 * 311.45739 * 14 12 10 29 29 H 1.09003 * 109.60570 * 307.77231 * 15 14 12 30 30 H 1.08998 * 109.60256 * 187.29121 * 15 14 12 31 31 H 0.96998 * 117.94722 * 199.05141 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5579 -0.0011 12 6 1.2438 -4.8630 -0.0034 13 1 0.6163 -4.9176 -0.8928 14 6 2.2399 -6.0252 -0.0138 15 6 2.9181 -6.0946 1.3598 16 6 1.8765 -6.5087 2.3999 17 1 1.5967 -7.5486 2.2309 18 6 2.4763 -6.3676 3.8003 19 9 1.5340 -6.7681 4.7537 20 9 2.8279 -5.0322 4.0246 21 9 3.6153 -7.1733 3.9032 22 7 0.6904 -5.6679 2.2968 23 6 0.3796 -4.9416 1.2224 24 8 -0.6564 -4.3114 1.2357 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0016 27 1 1.7125 -6.9587 -0.2103 28 1 2.9905 -5.8582 -0.7863 29 1 3.3233 -5.1160 1.6175 30 1 3.7219 -6.8304 1.3340 31 1 0.0892 -5.6347 3.0572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408004922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:04 Heat of formation + Delta-G solvation = -234.342052 kcal Electronic energy + Delta-G solvation = -23031.525015 eV Core-core repulsion = 18897.484521 eV Total energy + Delta-G solvation = -4134.040494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.22082 -47.76610 -47.62679 -40.58071 -37.86805 -36.64922 -34.10139 -32.79983 -31.31846 -30.49378 -27.04768 -24.84184 -23.24320 -22.68072 -20.62095 -18.92608 -18.54589 -18.38920 -18.21496 -17.64712 -16.98766 -16.16927 -15.74084 -14.76155 -14.67829 -14.60172 -14.23644 -14.20372 -14.10738 -14.02530 -13.80001 -13.78960 -13.49121 -13.31280 -12.84316 -12.39357 -12.07527 -11.56199 -11.39636 -11.20553 -11.01835 -10.93521 -10.36207 -10.25901 -9.68744 -9.54365 -9.32814 -8.49781 -8.02223 -6.44877 -3.86872 2.38081 2.78077 2.94075 3.14809 3.25361 3.32287 3.56656 3.73997 3.83460 4.12500 4.14033 4.56207 4.65239 4.74018 4.84475 4.98094 5.16803 5.28588 5.62824 5.70629 5.86598 6.14200 6.20862 6.39855 6.65712 7.13570 7.50874 7.98636 8.23591 8.52920 9.09999 9.48109 9.96115 10.71084 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.005489 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.776346 B = 5099.606046 C = 5257.565642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.541 5.541 10 C 0.438 3.562 11 O -0.589 6.589 12 C -0.121 4.121 13 H 0.120 0.880 14 C -0.092 4.092 15 C -0.141 4.141 16 C 0.107 3.893 17 H 0.116 0.884 18 C 0.440 3.560 19 F -0.185 7.185 20 F -0.169 7.169 21 F -0.176 7.176 22 N -0.716 5.716 23 C 0.539 3.461 24 O -0.524 6.524 25 H 0.274 0.726 26 H 0.401 0.599 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -15.098 4.314 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.175 5.175 10 C 0.223 3.777 11 O -0.475 6.475 12 C -0.145 4.145 13 H 0.138 0.862 14 C -0.129 4.129 15 C -0.178 4.178 16 C -0.001 4.001 17 H 0.134 0.866 18 C 0.385 3.615 19 F -0.166 7.166 20 F -0.150 7.150 21 F -0.158 7.158 22 N -0.371 5.371 23 C 0.326 3.674 24 O -0.399 6.399 25 H 0.084 0.916 26 H 0.237 0.763 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.521 -14.551 4.134 15.335 hybrid contribution -0.379 0.788 0.726 1.136 sum 2.142 -13.763 4.860 14.752 Atomic orbital electron populations 1.69672 1.06033 1.28359 1.48476 1.25379 0.95637 1.00004 0.96739 0.85777 0.79704 0.80880 0.77829 1.19074 1.20571 1.20613 1.19808 0.93458 0.82091 1.48249 0.87580 1.42001 1.10086 1.04475 1.60983 1.18998 0.87819 0.83879 0.87042 1.90509 1.13049 1.86430 1.57536 1.21449 0.98058 0.98111 0.96905 0.86188 1.21355 0.98253 0.95918 0.97408 1.22108 0.96211 1.05881 0.93616 1.22180 0.88853 0.98264 0.90842 0.86626 1.20977 0.76753 0.74475 0.89320 1.93184 1.64917 1.90635 1.67862 1.93269 1.92133 1.34104 1.95513 1.93188 1.52297 1.73598 1.96705 1.45308 1.24503 1.48013 1.19244 1.19962 0.86047 0.77291 0.84146 1.90818 1.25286 1.42043 1.81771 0.91634 0.76345 0.91118 0.88512 0.87374 0.88668 0.76018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 13.05 55.50 0.72 -24.20 16 2 C 0.03 0.71 5.50 -17.46 -0.10 0.61 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.31 -8.63 9.68 -14.93 -0.14 -8.78 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.54 -14.20 5.18 -10.96 -0.06 -14.25 16 10 C 0.44 10.14 6.72 -10.98 -0.07 10.07 16 11 O -0.59 -14.81 13.92 5.55 0.08 -14.73 16 12 C -0.12 -2.09 2.84 -93.14 -0.26 -2.35 16 13 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 14 C -0.09 -1.20 5.14 -26.52 -0.14 -1.34 16 15 C -0.14 -1.80 4.87 -26.59 -0.13 -1.93 16 16 C 0.11 1.21 3.04 -68.38 -0.21 1.00 16 17 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 18 C 0.44 5.34 2.79 37.16 0.10 5.44 16 19 F -0.18 -2.15 16.87 2.25 0.04 -2.11 16 20 F -0.17 -2.61 16.60 2.25 0.04 -2.57 16 21 F -0.18 -2.01 16.92 2.25 0.04 -1.97 16 22 N -0.72 -10.00 5.04 -54.85 -0.28 -10.28 16 23 C 0.54 9.52 6.86 -11.87 -0.08 9.44 16 24 O -0.52 -11.19 16.90 5.56 0.09 -11.09 16 25 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 26 H 0.40 10.74 6.99 -40.82 -0.29 10.45 16 27 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.10 1.33 7.72 -51.93 -0.40 0.93 16 29 H 0.11 1.84 5.82 -51.93 -0.30 1.54 16 30 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 31 H 0.40 5.26 8.27 -40.82 -0.34 4.92 16 LS Contribution 279.50 15.07 4.21 4.21 Total: -1.00 -32.19 279.50 -3.69 -35.87 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -2.52 Total: 12.86 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -1.03 Total: 12.16 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.39 Total: -48.74 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.17 Total: -25.82 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.19 -3.69 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408004922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.468 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds