Wall clock time and date at job start Tue Mar 31 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00098 * 2 1 4 4 H 1.48495 * 109.47491 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00001 * 3 2 1 6 6 H 1.48501 * 109.47331 * 59.99809 * 3 2 1 7 7 C 1.38958 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99836 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00072 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99850 * 180.02562 * 10 9 7 13 13 H 1.08991 * 109.40377 * 59.82557 * 12 10 9 14 14 C 1.53069 * 109.39967 * 179.57008 * 12 10 9 15 15 C 1.53349 * 108.42464 * 71.22506 * 14 12 10 16 16 C 1.52918 * 108.67498 * 67.53105 * 15 14 12 17 17 H 1.09005 * 109.13189 * 69.45089 * 16 15 14 18 18 C 1.52997 * 109.30168 * 188.93311 * 16 15 14 19 19 F 1.39905 * 109.47157 * 181.03628 * 18 16 15 20 20 F 1.39900 * 109.47010 * 61.04019 * 18 16 15 21 21 F 1.39897 * 109.47422 * 301.03711 * 18 16 15 22 22 N 1.45753 * 110.48694 * 309.24926 * 16 15 14 23 23 C 1.33353 * 124.11183 * 19.07092 * 22 16 15 24 24 O 1.21273 * 118.24812 * 177.75574 * 23 22 16 25 25 H 0.96999 * 119.99982 * 359.97438 * 1 2 3 26 26 H 0.97008 * 120.00054 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.67448 * 190.95976 * 14 12 10 28 28 H 1.09006 * 109.67337 * 311.45739 * 14 12 10 29 29 H 1.09003 * 109.60570 * 307.77231 * 15 14 12 30 30 H 1.08998 * 109.60256 * 187.29121 * 15 14 12 31 31 H 0.96998 * 117.94722 * 199.05141 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5579 -0.0011 12 6 1.2438 -4.8630 -0.0034 13 1 0.6163 -4.9176 -0.8928 14 6 2.2399 -6.0252 -0.0138 15 6 2.9181 -6.0946 1.3598 16 6 1.8765 -6.5087 2.3999 17 1 1.5967 -7.5486 2.2309 18 6 2.4763 -6.3676 3.8003 19 9 1.5340 -6.7681 4.7537 20 9 2.8279 -5.0322 4.0246 21 9 3.6153 -7.1733 3.9032 22 7 0.6904 -5.6679 2.2968 23 6 0.3796 -4.9416 1.2224 24 8 -0.6564 -4.3114 1.2357 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0016 27 1 1.7125 -6.9587 -0.2103 28 1 2.9905 -5.8582 -0.7863 29 1 3.3233 -5.1160 1.6175 30 1 3.7219 -6.8304 1.3340 31 1 0.0892 -5.6347 3.0572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408004922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:04 Heat of formation + Delta-G solvation = -259.191076 kcal Electronic energy + Delta-G solvation = -23032.602549 eV Core-core repulsion = 18897.484521 eV Total energy + Delta-G solvation = -4135.118029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.21127 -48.71140 -48.68315 -41.97763 -39.67027 -37.93959 -36.04700 -34.13981 -33.30944 -31.74351 -28.38561 -26.65162 -24.39914 -23.85341 -22.20528 -20.36773 -19.87049 -19.57747 -19.35310 -19.20480 -18.34528 -17.51215 -17.20599 -16.69046 -15.91690 -15.87220 -15.64429 -15.45701 -15.36539 -15.12132 -14.95366 -14.85429 -14.81715 -14.72332 -14.27641 -13.82250 -13.54962 -13.34810 -12.96274 -12.53000 -12.43524 -12.23560 -12.14878 -12.02603 -11.53177 -11.07513 -10.52534 -10.38507 -10.07227 -8.50495 -6.01748 1.12196 1.35247 1.39080 1.54456 1.61687 1.75988 2.02670 2.26646 2.61312 2.85347 3.01497 3.13921 3.19138 3.48882 3.62039 3.66815 3.92024 4.09580 4.33613 4.56647 4.64451 4.83561 5.11081 5.26401 5.36718 5.51033 5.86343 5.92577 6.49051 6.90765 7.03701 7.47880 7.98045 8.66629 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.005489 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.776346 B = 5099.606046 C = 5257.565642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.016 4.016 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.609 6.609 12 C -0.117 4.117 13 H 0.136 0.864 14 C -0.086 4.086 15 C -0.142 4.142 16 C 0.109 3.891 17 H 0.172 0.828 18 C 0.441 3.559 19 F -0.180 7.180 20 F -0.195 7.195 21 F -0.169 7.169 22 N -0.705 5.705 23 C 0.539 3.461 24 O -0.569 6.569 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -17.094 4.384 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.106 0.894 9 N -0.199 5.199 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.142 4.142 13 H 0.154 0.846 14 C -0.123 4.123 15 C -0.180 4.180 16 C 0.003 3.997 17 H 0.189 0.811 18 C 0.386 3.614 19 F -0.161 7.161 20 F -0.176 7.176 21 F -0.150 7.150 22 N -0.358 5.358 23 C 0.326 3.674 24 O -0.447 6.447 25 H 0.088 0.912 26 H 0.230 0.770 27 H 0.140 0.860 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.976 -16.598 4.226 17.384 hybrid contribution -0.434 1.257 0.753 1.528 sum 2.542 -15.341 4.979 16.328 Atomic orbital electron populations 1.69758 1.07290 1.29433 1.49333 1.26250 0.96505 1.03042 0.95866 0.84792 0.78184 0.76508 0.78355 1.19091 1.19247 1.19855 1.19840 0.92949 0.83777 1.50214 0.89360 1.42145 1.09745 1.05113 1.62916 1.20005 0.87927 0.85142 0.84013 1.90489 1.14413 1.87354 1.57379 1.21477 0.98875 0.96093 0.97728 0.84624 1.21472 0.97411 0.96031 0.97411 1.22106 0.97579 1.04559 0.93755 1.22547 0.87269 1.00257 0.89676 0.81059 1.21094 0.77015 0.73469 0.89820 1.93198 1.64696 1.90426 1.67823 1.93228 1.92420 1.36260 1.95717 1.93205 1.51968 1.73133 1.96704 1.45213 1.25229 1.47168 1.18223 1.19918 0.85441 0.77142 0.84863 1.90803 1.27244 1.43966 1.82712 0.91205 0.76953 0.85959 0.89119 0.92068 0.85029 0.75349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.83 13.05 21.67 0.28 -52.54 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 3 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.34 -19.75 9.68 84.04 0.81 -18.94 16 8 H 0.09 5.33 7.16 -2.91 -0.02 5.31 16 9 N -0.56 -30.63 5.18 -306.98 -1.59 -32.22 16 10 C 0.44 20.83 6.72 87.66 0.59 21.42 16 11 O -0.61 -31.23 13.92 -3.07 -0.04 -31.27 16 12 C -0.12 -3.93 2.84 -12.42 -0.04 -3.96 16 13 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 14 C -0.09 -1.97 5.14 30.73 0.16 -1.81 16 15 C -0.14 -3.23 4.87 30.68 0.15 -3.08 16 16 C 0.11 2.07 3.04 45.10 0.14 2.21 16 17 H 0.17 1.55 8.14 -2.38 -0.02 1.53 16 18 C 0.44 9.64 2.79 71.98 0.20 9.84 16 19 F -0.18 -3.73 16.87 44.97 0.76 -2.97 16 20 F -0.19 -5.92 16.60 44.97 0.75 -5.18 16 21 F -0.17 -3.34 16.92 44.97 0.76 -2.58 16 22 N -0.70 -18.22 5.04 -446.65 -2.25 -20.47 16 23 C 0.54 18.53 6.86 87.72 0.60 19.13 16 24 O -0.57 -24.46 16.90 -3.01 -0.05 -24.51 16 25 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 26 H 0.40 22.06 6.99 -92.70 -0.65 21.41 16 27 H 0.12 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.09 2.25 7.72 -2.38 -0.02 2.23 16 29 H 0.06 2.03 5.82 -2.39 -0.01 2.01 16 30 H 0.13 2.04 8.03 -2.39 -0.02 2.02 16 31 H 0.41 9.95 8.27 -92.71 -0.77 9.19 16 Total: -1.00 -73.66 279.50 3.53 -70.14 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.19 Total: 31.26 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 3.08 Total: 24.37 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.56 Total: -105.23 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.09 Total: -55.79 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.27 Total: -10.73 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.66 3.53 -70.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408004922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.055 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds