Wall clock time and date at job start Tue Mar 31 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34523 * 125.84823 * 2 1 4 4 N 1.38569 * 107.14696 * 179.97438 * 3 2 1 5 5 N 1.38810 * 139.84292 * 179.97438 * 4 3 2 6 6 C 1.28224 * 116.64572 * 180.02562 * 5 4 3 7 7 N 1.38576 * 124.91826 * 180.02562 * 6 5 4 8 8 C 1.47483 * 110.99998 * 84.02854 * 7 6 5 9 9 C 1.53511 * 87.93255 * 138.70454 * 8 7 6 10 10 O 1.42902 * 114.17073 * 87.61885 * 9 8 7 11 11 C 1.50699 * 114.17008 * 220.32801 * 9 8 7 12 12 H 1.07995 * 120.00214 * 93.84268 * 11 9 8 13 13 C 1.37873 * 119.99746 * 273.84035 * 11 9 8 14 14 N 1.31517 * 120.00335 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99827 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47140 * 60.00249 * 15 13 11 17 17 H 1.48505 * 109.47328 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47464 * 300.00086 * 15 13 11 19 19 C 1.47482 * 111.00177 * 179.97438 * 7 6 5 20 20 S 1.75766 * 110.17042 * 0.02562 * 6 5 4 21 21 C 1.34936 * 106.60520 * 0.02562 * 4 3 2 22 22 N 1.32377 * 108.88010 * 359.72808 * 21 4 3 23 23 H 1.09001 * 109.46953 * 89.99949 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99546 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00177 * 1 2 3 26 26 H 1.08001 * 126.42941 * 359.96205 * 3 2 1 27 27 H 1.08999 * 113.47414 * 253.47089 * 8 7 6 28 28 H 1.08997 * 113.47412 * 23.93529 * 8 7 6 29 29 H 0.96699 * 113.99533 * 86.15852 * 10 9 8 30 30 H 0.97001 * 119.99709 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.47385 * 336.06410 * 19 7 6 32 32 H 1.09001 * 113.47274 * 106.52814 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.0904 0.0000 4 7 3.6074 0.6461 0.0006 5 7 4.8993 1.1538 0.0005 6 6 5.8537 0.2976 0.0008 7 7 7.2030 0.6136 0.0013 8 6 7.6844 0.8735 1.3709 9 6 8.9536 0.0870 1.0144 10 8 9.9849 0.8782 0.4207 11 6 9.4502 -0.8148 2.1149 12 1 9.1508 -1.8522 2.1395 13 6 10.2868 -0.3155 3.0905 14 7 10.6511 0.9479 3.0609 15 14 10.9018 -1.4331 4.4551 16 1 11.6705 -2.5583 3.8647 17 1 11.7792 -0.6600 5.3705 18 1 9.7443 -1.9694 5.2152 19 6 8.0316 -0.6064 0.0021 20 16 5.2030 -1.3352 0.0005 21 6 3.5581 -0.7023 0.0003 22 7 2.2907 -1.0846 0.0056 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9661 2.1192 -0.0006 27 1 7.8698 1.9284 1.5731 28 1 7.0796 0.3958 2.1417 29 1 10.5641 1.3138 1.0608 30 1 11.2394 1.2992 3.7475 31 1 7.5195 -1.4789 0.4079 32 1 8.5113 -0.8061 -0.9561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:04 Heat of formation + Delta-G solvation = 125.307504 kcal Electronic energy + Delta-G solvation = -19168.529868 eV Core-core repulsion = 16066.987311 eV Total energy + Delta-G solvation = -3101.542557 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38307 -40.30268 -37.30737 -34.69202 -32.34962 -31.77309 -30.84865 -28.48356 -26.59404 -25.73264 -25.16243 -23.31732 -20.85008 -20.19743 -19.45035 -18.83781 -17.68402 -16.36297 -16.05707 -15.79163 -15.32523 -14.82016 -14.62576 -14.33798 -13.52935 -13.44380 -13.32348 -12.74885 -12.57836 -12.40017 -12.17026 -11.77798 -11.62837 -11.24863 -11.16567 -10.91362 -10.65411 -10.48243 -10.34097 -10.06388 -9.74227 -9.33132 -8.92655 -8.71631 -8.39309 -7.97610 -6.53966 -4.65666 0.54711 0.96341 1.31028 1.84389 2.02730 2.75353 3.09539 3.16026 3.17956 3.84585 4.07902 4.41604 4.66130 4.74431 5.08937 5.23564 5.30879 5.43766 5.53352 5.53945 5.70047 5.72967 5.79890 5.94666 6.13883 6.26102 6.47668 6.54812 6.85714 7.04980 7.48753 7.49458 7.60192 7.72176 8.37733 9.06163 9.32973 10.53035 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032001 B = 0.004386 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.754573 B = 6381.806791 C = 6660.543932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.029 3.971 3 C -0.013 4.013 4 N -0.297 5.297 5 N -0.269 5.269 6 C 0.266 3.734 7 N -0.380 5.380 8 C -0.009 4.009 9 C 0.264 3.736 10 O -0.564 6.564 11 C -0.543 4.543 12 H 0.075 0.925 13 C 0.076 3.924 14 N -0.894 5.894 15 Si 0.910 3.090 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.003 3.997 20 S 0.134 5.866 21 C 0.104 3.896 22 N -0.444 5.444 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.184 0.816 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.397 0.603 30 H 0.277 0.723 31 H 0.086 0.914 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 -1.200 -3.132 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.148 4.148 4 N -0.072 5.072 5 N -0.087 5.087 6 C -0.120 4.120 7 N -0.103 5.103 8 C -0.136 4.136 9 C 0.222 3.778 10 O -0.378 6.378 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.128 4.128 14 N -0.533 5.533 15 Si 0.737 3.263 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.126 4.126 20 S 0.368 5.632 21 C -0.265 4.265 22 N -0.169 5.169 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.201 0.799 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.254 0.746 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.146 -1.651 -4.099 11.990 hybrid contribution 0.035 0.642 1.650 1.771 sum -11.110 -1.009 -2.450 11.422 Atomic orbital electron populations 1.20055 0.86036 1.03188 1.02701 1.20824 0.96702 0.87356 1.05613 1.22378 0.76954 1.01252 1.14242 1.47667 1.03667 1.05131 1.50697 1.74132 0.86467 1.21705 1.26426 1.27962 0.97099 0.91563 0.95379 1.66050 0.92589 1.24822 1.26840 1.25280 0.99363 1.04667 0.84329 1.19198 0.83830 0.86967 0.87852 1.86046 1.45208 1.67160 1.39339 1.21414 1.30733 0.97206 1.08716 0.90727 1.25083 0.94534 0.95288 0.97902 1.69249 1.34972 1.13233 1.35850 0.86336 0.79007 0.80327 0.80657 1.19583 1.20812 1.19741 1.24590 0.94120 0.90100 1.03742 1.85722 0.88268 1.06541 1.82655 1.26711 1.00661 0.85495 1.13626 1.70453 0.96181 1.29492 1.20813 0.90868 0.90635 0.90745 0.79868 0.88901 0.90202 0.74593 0.91235 0.89655 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.42 36.01 0.38 -0.20 16 2 C 0.03 0.41 7.07 -83.04 -0.59 -0.17 16 3 C -0.01 -0.19 11.95 -15.82 -0.19 -0.38 16 4 N -0.30 -5.42 4.40 -12.46 -0.05 -5.47 16 5 N -0.27 -5.25 12.02 30.49 0.37 -4.89 16 6 C 0.27 5.03 6.75 -88.89 -0.60 4.43 16 7 N -0.38 -7.56 6.52 -183.90 -1.20 -8.75 16 8 C -0.01 -0.19 7.08 -7.60 -0.05 -0.24 16 9 C 0.26 5.94 1.57 -91.26 -0.14 5.80 16 10 O -0.56 -13.61 13.54 -35.23 -0.48 -14.09 16 11 C -0.54 -12.90 8.68 -34.44 -0.30 -13.20 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.08 1.80 5.40 -17.82 -0.10 1.71 16 14 N -0.89 -21.77 11.02 55.43 0.61 -21.16 16 15 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C 0.00 0.07 6.74 -7.62 -0.05 0.02 16 20 S 0.13 2.26 20.90 -107.50 -2.25 0.01 16 21 C 0.10 1.89 8.99 -88.88 -0.80 1.09 16 22 N -0.44 -7.81 11.33 -9.79 -0.11 -7.92 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 27 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 28 H 0.08 1.66 7.85 -51.93 -0.41 1.25 16 29 H 0.40 9.77 6.34 45.56 0.29 10.05 16 30 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.09 1.51 6.05 -50.43 -0.31 1.20 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -27.31 290.35 -8.71 -36.02 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.51 Total: 9.32 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.44 Total: -1.14 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.39 Total: -48.20 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.48 Total: -14.09 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.25 Total: 0.01 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.31 -8.71 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.326 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds