Wall clock time and date at job start Tue Mar 31 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34523 * 125.84823 * 2 1 4 4 N 1.38569 * 107.14696 * 179.97438 * 3 2 1 5 5 N 1.38810 * 139.84292 * 179.97438 * 4 3 2 6 6 C 1.28224 * 116.64572 * 180.02562 * 5 4 3 7 7 N 1.38576 * 124.91826 * 180.02562 * 6 5 4 8 8 C 1.47483 * 110.99998 * 84.02854 * 7 6 5 9 9 C 1.53511 * 87.93255 * 138.70454 * 8 7 6 10 10 O 1.42902 * 114.17073 * 87.61885 * 9 8 7 11 11 C 1.50699 * 114.17008 * 220.32801 * 9 8 7 12 12 H 1.07995 * 120.00214 * 93.84268 * 11 9 8 13 13 C 1.37873 * 119.99746 * 273.84035 * 11 9 8 14 14 N 1.31517 * 120.00335 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99827 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47140 * 60.00249 * 15 13 11 17 17 H 1.48505 * 109.47328 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47464 * 300.00086 * 15 13 11 19 19 C 1.47482 * 111.00177 * 179.97438 * 7 6 5 20 20 S 1.75766 * 110.17042 * 0.02562 * 6 5 4 21 21 C 1.34936 * 106.60520 * 0.02562 * 4 3 2 22 22 N 1.32377 * 108.88010 * 359.72808 * 21 4 3 23 23 H 1.09001 * 109.46953 * 89.99949 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99546 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00177 * 1 2 3 26 26 H 1.08001 * 126.42941 * 359.96205 * 3 2 1 27 27 H 1.08999 * 113.47414 * 253.47089 * 8 7 6 28 28 H 1.08997 * 113.47412 * 23.93529 * 8 7 6 29 29 H 0.96699 * 113.99533 * 86.15852 * 10 9 8 30 30 H 0.97001 * 119.99709 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.47385 * 336.06410 * 19 7 6 32 32 H 1.09001 * 113.47274 * 106.52814 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.0904 0.0000 4 7 3.6074 0.6461 0.0006 5 7 4.8993 1.1538 0.0005 6 6 5.8537 0.2976 0.0008 7 7 7.2030 0.6136 0.0013 8 6 7.6844 0.8735 1.3709 9 6 8.9536 0.0870 1.0144 10 8 9.9849 0.8782 0.4207 11 6 9.4502 -0.8148 2.1149 12 1 9.1508 -1.8522 2.1395 13 6 10.2868 -0.3155 3.0905 14 7 10.6511 0.9479 3.0609 15 14 10.9018 -1.4331 4.4551 16 1 11.6705 -2.5583 3.8647 17 1 11.7792 -0.6600 5.3705 18 1 9.7443 -1.9694 5.2152 19 6 8.0316 -0.6064 0.0021 20 16 5.2030 -1.3352 0.0005 21 6 3.5581 -0.7023 0.0003 22 7 2.2907 -1.0846 0.0056 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9661 2.1192 -0.0006 27 1 7.8698 1.9284 1.5731 28 1 7.0796 0.3958 2.1417 29 1 10.5641 1.3138 1.0608 30 1 11.2394 1.2992 3.7475 31 1 7.5195 -1.4789 0.4079 32 1 8.5113 -0.8061 -0.9561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408385215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:04 Heat of formation + Delta-G solvation = 105.689707 kcal Electronic energy + Delta-G solvation = -19169.380560 eV Core-core repulsion = 16066.987311 eV Total energy + Delta-G solvation = -3102.393248 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.65555 -41.88802 -38.71141 -36.41397 -34.17350 -32.99791 -32.04391 -30.03363 -27.82685 -27.34861 -26.73230 -24.73681 -22.13033 -21.57319 -20.99880 -20.26989 -19.39199 -17.74352 -17.59151 -17.28089 -16.98989 -16.37195 -15.96523 -15.82350 -15.06823 -14.55582 -14.51362 -14.30244 -13.95855 -13.63297 -13.31483 -13.20967 -13.12541 -12.83839 -12.79955 -12.36674 -12.24982 -12.22670 -11.73752 -11.46759 -11.27955 -10.77354 -10.67372 -10.34565 -9.96026 -9.22210 -8.32899 -6.50656 -0.79963 -0.42845 -0.05059 0.52093 0.68488 1.47444 1.49776 1.56781 1.59166 2.34910 2.48251 2.87492 3.06232 3.60105 3.67857 3.78094 3.84727 4.05355 4.11950 4.30252 4.57305 4.66127 4.69158 4.83717 4.88170 4.91467 4.98777 5.11708 5.45378 5.50958 5.67900 5.80810 6.15292 6.47149 6.56166 7.23498 7.44006 8.73385 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032001 B = 0.004386 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.754573 B = 6381.806791 C = 6660.543932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.029 3.971 3 C -0.019 4.019 4 N -0.307 5.307 5 N -0.286 5.286 6 C 0.253 3.747 7 N -0.387 5.387 8 C 0.000 4.000 9 C 0.243 3.757 10 O -0.575 6.575 11 C -0.560 4.560 12 H 0.080 0.920 13 C 0.035 3.965 14 N -0.915 5.915 15 Si 0.968 3.032 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.014 3.986 20 S 0.171 5.829 21 C 0.070 3.930 22 N -0.462 5.462 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.218 0.782 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.391 0.609 30 H 0.278 0.722 31 H 0.101 0.899 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.884 -1.799 -3.050 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.104 4.104 3 C -0.152 4.152 4 N -0.084 5.084 5 N -0.105 5.105 6 C -0.133 4.133 7 N -0.110 5.110 8 C -0.128 4.128 9 C 0.201 3.799 10 O -0.388 6.388 11 C -0.597 4.597 12 H 0.098 0.902 13 C -0.166 4.166 14 N -0.555 5.555 15 Si 0.792 3.208 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.115 4.115 20 S 0.405 5.595 21 C -0.297 4.297 22 N -0.188 5.188 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.235 0.765 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.247 0.753 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.883 -2.263 -4.034 13.689 hybrid contribution 0.402 0.844 1.587 1.842 sum -12.481 -1.420 -2.446 12.798 Atomic orbital electron populations 1.20268 0.82437 1.04726 1.04256 1.21701 0.98672 0.86225 1.03843 1.23213 0.75690 1.03207 1.13127 1.47888 1.03874 1.05355 1.51259 1.74012 0.87338 1.22850 1.26309 1.27774 0.96552 0.92962 0.96005 1.65951 0.93580 1.25469 1.26004 1.25032 0.99063 1.03476 0.85243 1.19430 0.83942 0.87474 0.89037 1.86029 1.45722 1.67470 1.39548 1.21711 1.31076 0.97696 1.09241 0.90205 1.25771 0.94755 0.96366 0.99755 1.69325 1.35390 1.14344 1.36418 0.85443 0.78396 0.78689 0.78225 1.19286 1.20850 1.19489 1.24523 0.93226 0.90245 1.03509 1.85413 0.87623 1.04265 1.82155 1.26979 1.01367 0.85917 1.15461 1.70474 0.96267 1.31002 1.21067 0.89178 0.90456 0.87854 0.76504 0.90382 0.90203 0.75256 0.91189 0.88117 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.42 71.24 0.74 -0.16 16 2 C 0.03 0.76 7.07 41.41 0.29 1.05 16 3 C -0.02 -0.52 11.95 82.78 0.99 0.47 16 4 N -0.31 -10.85 4.40 -193.32 -0.85 -11.70 16 5 N -0.29 -11.04 12.02 -57.44 -0.69 -11.73 16 6 C 0.25 9.46 6.75 179.74 1.21 10.67 16 7 N -0.39 -15.36 6.52 -736.14 -4.80 -20.15 16 8 C 0.00 0.00 7.08 83.54 0.59 0.59 16 9 C 0.24 11.00 1.57 -11.21 -0.02 10.99 16 10 O -0.57 -28.19 13.54 -148.98 -2.02 -30.20 16 11 C -0.56 -26.49 8.68 25.60 0.22 -26.27 16 12 H 0.08 3.59 7.81 -2.91 -0.02 3.57 16 13 C 0.03 1.65 5.40 84.65 0.46 2.11 16 14 N -0.91 -44.99 11.02 21.45 0.24 -44.76 16 15 Si 0.97 38.01 29.54 68.60 2.03 40.04 16 16 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 C 0.01 0.52 6.74 83.52 0.56 1.08 16 20 S 0.17 5.60 20.90 -56.49 -1.18 4.42 16 21 C 0.07 2.48 8.99 179.74 1.62 4.09 16 22 N -0.46 -15.55 11.33 -184.87 -2.09 -17.64 16 23 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.22 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.08 3.35 7.85 -2.39 -0.02 3.33 16 29 H 0.39 19.76 6.34 -74.06 -0.47 19.29 16 30 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.10 3.45 6.05 -3.34 -0.02 3.43 16 32 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 Total: -1.00 -58.10 290.35 -2.00 -60.10 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.70 Total: 27.00 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.67 Total: 4.63 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -8.20 Total: -105.98 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -2.02 Total: -30.20 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.18 Total: 4.42 kcal Total: -58.10 -2.00 -60.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.787 kcal (2) G-P(sol) polarization free energy of solvation -58.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds