Wall clock time and date at job start Tue Mar 31 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 5 5 C 1.46906 * 110.99789 * 274.99821 * 4 2 1 6 6 C 1.50703 * 109.47109 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99876 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47285 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47233 * 119.99722 * 10 8 6 13 13 H 1.48500 * 109.46790 * 239.99650 * 10 8 6 14 14 C 1.50701 * 109.47125 * 239.99751 * 2 1 3 15 15 N 1.29034 * 124.91233 * 104.99876 * 14 2 1 16 16 C 1.31787 * 117.12018 * 179.97438 * 15 14 2 17 17 C 1.50697 * 122.74495 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47214 * 90.00210 * 17 16 15 19 19 F 1.39900 * 109.47152 * 209.99905 * 17 16 15 20 20 F 1.39901 * 109.47278 * 330.00038 * 17 16 15 21 21 C 1.33637 * 114.50428 * 0.02562 * 16 15 14 22 22 S 1.70970 * 124.91982 * 284.69842 * 14 2 1 23 23 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 25 25 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 26 26 H 1.00899 * 111.00672 * 151.04765 * 4 2 1 27 27 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 28 28 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 29 29 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 30 30 H 1.07995 * 126.03716 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5873 -0.5218 3.5560 7 1 2.8370 -1.5698 3.4796 8 6 2.7305 0.1350 4.7598 9 7 2.4270 1.4113 4.8527 10 14 3.3570 -0.7876 6.2584 11 1 3.6257 -2.2015 5.8927 12 1 4.6103 -0.1541 6.7415 13 1 2.3327 -0.7406 7.3324 14 6 2.0323 -0.7105 -1.2304 15 7 2.5366 -0.1279 -2.2654 16 6 2.9287 -0.9006 -3.2583 17 6 3.5352 -0.3550 -4.5254 18 9 4.9238 -0.2694 -4.3785 19 9 3.2309 -1.2069 -5.5925 20 9 3.0140 0.9178 -4.7814 21 6 2.7445 -2.2077 -3.0495 22 16 2.0232 -2.4054 -1.4541 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.9173 -1.1205 1.0287 27 1 2.7588 1.0461 2.1182 28 1 1.0870 0.6163 2.5525 29 1 2.5281 1.8734 5.6995 30 1 2.9970 -3.0025 -3.7357 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411702482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:54 Heat of formation + Delta-G solvation = -108.154093 kcal Electronic energy + Delta-G solvation = -19201.991651 eV Core-core repulsion = 15516.175948 eV Total energy + Delta-G solvation = -3685.815703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.28387 -47.83944 -47.71430 -40.09178 -36.43974 -33.02265 -31.33005 -29.57131 -27.09778 -26.41363 -24.82044 -22.27366 -20.93843 -20.20714 -19.05215 -18.66632 -18.24700 -16.93077 -16.55562 -15.39954 -15.07347 -14.91412 -14.60175 -14.51566 -14.46817 -14.19519 -13.90834 -13.89308 -13.36939 -13.14132 -13.01803 -12.47970 -11.96621 -11.70522 -11.68944 -11.60082 -11.07635 -10.73173 -10.70033 -10.07003 -9.83319 -9.66206 -9.32876 -9.17349 -8.57862 -7.62918 -6.11143 -4.13838 0.34807 1.04069 1.47313 2.22562 2.45794 3.26926 3.34515 3.37999 3.40042 3.88170 4.23989 4.24959 4.39533 4.83970 4.92051 5.04505 5.25632 5.47890 5.61273 5.68525 6.06509 6.20918 6.48762 7.02628 7.24294 7.36590 7.64305 7.98433 8.11592 8.38851 8.94097 9.51458 10.99928 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.003791 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.066094 B = 7384.577475 C = 7432.679240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.151 3.849 3 H 0.074 0.926 4 N -0.680 5.680 5 C 0.194 3.806 6 C -0.517 4.517 7 H 0.064 0.936 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.900 3.100 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.064 3.936 15 N -0.453 5.453 16 C -0.023 4.023 17 C 0.547 3.453 18 F -0.171 7.171 19 F -0.173 7.173 20 F -0.165 7.165 21 C -0.233 4.233 22 S 0.232 5.768 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.331 0.669 27 H -0.008 1.008 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -6.936 -17.592 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.091 0.909 4 N -0.313 5.313 5 C 0.068 3.932 6 C -0.556 4.556 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.209 1.209 14 C -0.215 4.215 15 N -0.166 5.166 16 C -0.159 4.159 17 C 0.490 3.510 18 F -0.152 7.152 19 F -0.154 7.154 20 F -0.146 7.146 21 C -0.375 4.375 22 S 0.490 5.510 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.010 0.990 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.638 -7.295 -16.672 18.271 hybrid contribution 1.661 0.651 -0.403 1.829 sum 0.023 -6.645 -17.075 18.322 Atomic orbital electron populations 1.21811 0.92609 1.02540 1.02179 1.20256 0.96374 0.96083 0.83516 0.90869 1.61071 1.32732 1.34628 1.02825 1.19675 0.97151 0.90131 0.86229 1.21150 1.43770 0.96830 0.93801 0.91775 1.24976 0.95504 0.94894 0.99054 1.69965 1.48521 1.08984 1.25979 0.86411 0.78406 0.79933 0.82483 1.19618 1.21060 1.20933 1.27568 1.00050 0.95305 0.98569 1.65877 1.12798 1.38085 0.99879 1.19881 1.08795 0.90491 0.96696 1.17253 0.76002 0.75612 0.82128 1.93236 1.30218 1.96037 1.95731 1.93195 1.93012 1.70844 1.58385 1.93231 1.86377 1.40351 1.94624 1.27103 1.07255 0.99925 1.03197 1.84369 1.52576 1.07653 1.06442 0.92001 0.90568 0.92789 0.85182 0.98993 0.94687 0.92823 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.40 37.16 0.35 -1.64 16 2 C 0.15 2.57 3.12 -68.87 -0.22 2.35 16 3 H 0.07 1.36 7.80 -51.93 -0.40 0.96 16 4 N -0.68 -13.41 6.10 -109.22 -0.67 -14.07 16 5 C 0.19 4.79 5.24 -4.97 -0.03 4.77 16 6 C -0.52 -13.98 9.32 -34.44 -0.32 -14.30 16 7 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 10 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.06 0.97 5.99 -13.45 -0.08 0.89 16 15 N -0.45 -7.22 10.34 -8.06 -0.08 -7.31 16 16 C -0.02 -0.31 6.20 -84.23 -0.52 -0.83 16 17 C 0.55 7.00 3.49 36.00 0.13 7.13 16 18 F -0.17 -2.25 17.30 2.25 0.04 -2.21 16 19 F -0.17 -1.93 16.83 2.25 0.04 -1.89 16 20 F -0.16 -2.31 17.16 2.25 0.04 -2.27 16 21 C -0.23 -2.58 10.69 29.12 0.31 -2.27 16 22 S 0.23 2.77 22.86 -107.50 -2.46 0.32 16 23 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 24 H 0.08 1.23 7.45 -51.93 -0.39 0.84 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.33 6.36 8.24 -39.29 -0.32 6.03 16 27 H -0.01 -0.21 8.05 -51.93 -0.42 -0.62 16 28 H 0.04 0.92 7.44 -51.93 -0.39 0.53 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.19 1.45 8.00 -52.49 -0.42 1.03 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -29.04 293.03 -6.17 -35.21 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.73 Total: -0.59 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.48 Total: -2.41 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.01 Total: -46.62 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.12 Total: -6.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.46 Total: 0.32 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.04 -6.17 -35.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411702482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.947 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds