Wall clock time and date at job start Tue Mar 31 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 5 5 C 1.46906 * 110.99789 * 274.99821 * 4 2 1 6 6 C 1.50703 * 109.47109 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99876 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47285 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47233 * 119.99722 * 10 8 6 13 13 H 1.48500 * 109.46790 * 239.99650 * 10 8 6 14 14 C 1.50701 * 109.47125 * 239.99751 * 2 1 3 15 15 N 1.29034 * 124.91233 * 104.99876 * 14 2 1 16 16 C 1.31787 * 117.12018 * 179.97438 * 15 14 2 17 17 C 1.50697 * 122.74495 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47214 * 90.00210 * 17 16 15 19 19 F 1.39900 * 109.47152 * 209.99905 * 17 16 15 20 20 F 1.39901 * 109.47278 * 330.00038 * 17 16 15 21 21 C 1.33637 * 114.50428 * 0.02562 * 16 15 14 22 22 S 1.70970 * 124.91982 * 284.69842 * 14 2 1 23 23 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 25 25 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 26 26 H 1.00899 * 111.00672 * 151.04765 * 4 2 1 27 27 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 28 28 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 29 29 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 30 30 H 1.07995 * 126.03716 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5873 -0.5218 3.5560 7 1 2.8370 -1.5698 3.4796 8 6 2.7305 0.1350 4.7598 9 7 2.4270 1.4113 4.8527 10 14 3.3570 -0.7876 6.2584 11 1 3.6257 -2.2015 5.8927 12 1 4.6103 -0.1541 6.7415 13 1 2.3327 -0.7406 7.3324 14 6 2.0323 -0.7105 -1.2304 15 7 2.5366 -0.1279 -2.2654 16 6 2.9287 -0.9006 -3.2583 17 6 3.5352 -0.3550 -4.5254 18 9 4.9238 -0.2694 -4.3785 19 9 3.2309 -1.2069 -5.5925 20 9 3.0140 0.9178 -4.7814 21 6 2.7445 -2.2077 -3.0495 22 16 2.0232 -2.4054 -1.4541 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.9173 -1.1205 1.0287 27 1 2.7588 1.0461 2.1182 28 1 1.0870 0.6163 2.5525 29 1 2.5281 1.8734 5.6995 30 1 2.9970 -3.0025 -3.7357 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411702482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:54 Heat of formation + Delta-G solvation = -127.632464 kcal Electronic energy + Delta-G solvation = -19202.836297 eV Core-core repulsion = 15516.175948 eV Total energy + Delta-G solvation = -3686.660348 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.27298 -48.79442 -48.74887 -41.18013 -37.96589 -34.96438 -32.73537 -30.96441 -28.23164 -28.06325 -26.14061 -23.96827 -22.35562 -21.31965 -20.13742 -19.66142 -19.30316 -18.59925 -17.80536 -16.97087 -16.48020 -16.32712 -16.00217 -15.59414 -15.52973 -15.18615 -14.91990 -14.90428 -14.79028 -14.59264 -14.17999 -14.07263 -13.66032 -13.27144 -13.09897 -12.79192 -12.58689 -12.48479 -12.29588 -12.00821 -11.32473 -10.92639 -10.66649 -10.65441 -10.26540 -9.36465 -8.21919 -6.32647 -0.65718 0.06505 0.42551 1.13890 1.43789 1.44484 1.46654 1.57875 2.34739 2.42690 2.87712 3.12007 3.13030 3.24987 3.49534 3.96658 3.99042 4.26496 4.28667 4.50110 4.78016 4.89197 5.10314 5.19828 5.25705 5.60225 5.97332 6.25879 6.30162 6.56159 6.85259 7.38089 8.89984 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.003791 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.066094 B = 7384.577475 C = 7432.679240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 H 0.047 0.953 4 N -0.669 5.669 5 C 0.210 3.790 6 C -0.533 4.533 7 H 0.069 0.931 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.972 3.028 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.029 3.971 15 N -0.477 5.477 16 C -0.051 4.051 17 C 0.552 3.448 18 F -0.175 7.175 19 F -0.161 7.161 20 F -0.175 7.175 21 C -0.205 4.205 22 S 0.286 5.714 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.335 0.665 27 H -0.039 1.039 28 H 0.014 0.986 29 H 0.265 0.735 30 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -9.447 -18.271 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.040 3.960 3 H 0.065 0.935 4 N -0.301 5.301 5 C 0.082 3.918 6 C -0.571 4.571 7 H 0.088 0.912 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.796 3.204 11 H -0.183 1.183 12 H -0.208 1.208 13 H -0.205 1.205 14 C -0.249 4.249 15 N -0.192 5.192 16 C -0.186 4.186 17 C 0.495 3.505 18 F -0.156 7.156 19 F -0.142 7.142 20 F -0.157 7.157 21 C -0.346 4.346 22 S 0.544 5.456 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.152 0.848 27 H -0.021 1.021 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.431 -9.815 -17.375 20.007 hybrid contribution 1.595 1.380 -0.309 2.131 sum 0.163 -8.434 -17.684 19.593 Atomic orbital electron populations 1.21755 0.91170 1.03404 1.02158 1.20107 0.97449 0.94856 0.83578 0.93504 1.60923 1.32791 1.33484 1.02908 1.19292 0.94917 0.89811 0.87774 1.21532 1.43632 0.97206 0.94728 0.91240 1.25913 0.95595 0.95687 1.02349 1.70095 1.49683 1.10696 1.26911 0.85296 0.77701 0.79010 0.78368 1.18334 1.20757 1.20475 1.27039 1.02250 0.97512 0.98089 1.65769 1.12924 1.39913 1.00592 1.19992 1.10491 0.91384 0.96734 1.17165 0.75720 0.75348 0.82285 1.93228 1.30538 1.96047 1.95786 1.93217 1.92898 1.70310 1.57755 1.93207 1.86530 1.41239 1.94698 1.27592 1.04149 0.99864 1.03013 1.84149 1.51280 1.03914 1.06289 0.90608 0.92320 0.91059 0.84797 1.02144 0.96773 0.92651 0.75647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.40 71.98 0.68 -3.11 16 2 C 0.15 5.31 3.12 44.17 0.14 5.44 16 3 H 0.05 1.86 7.80 -2.39 -0.02 1.84 16 4 N -0.67 -26.69 6.10 -499.47 -3.05 -29.74 16 5 C 0.21 10.71 5.24 85.56 0.45 11.16 16 6 C -0.53 -29.07 9.32 25.60 0.24 -28.83 16 7 H 0.07 3.64 7.81 -2.91 -0.02 3.61 16 8 C 0.00 0.16 5.46 84.65 0.46 0.63 16 9 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 10 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.03 0.86 5.99 88.52 0.53 1.39 16 15 N -0.48 -14.94 10.34 -179.40 -1.86 -16.80 16 16 C -0.05 -1.30 6.20 41.52 0.26 -1.04 16 17 C 0.55 13.30 3.49 71.23 0.25 13.55 16 18 F -0.17 -4.38 17.30 44.97 0.78 -3.60 16 19 F -0.16 -3.18 16.83 44.97 0.76 -2.43 16 20 F -0.18 -4.82 17.16 44.97 0.77 -4.05 16 21 C -0.20 -3.82 10.69 66.78 0.71 -3.11 16 22 S 0.29 6.07 22.86 -56.49 -1.29 4.78 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.06 1.95 7.45 -2.39 -0.02 1.93 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.33 12.83 8.24 -89.69 -0.74 12.09 16 27 H -0.04 -2.21 8.05 -2.39 -0.02 -2.23 16 28 H 0.01 0.78 7.44 -2.38 -0.02 0.76 16 29 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.23 2.33 8.00 -2.91 -0.02 2.31 16 Total: -1.00 -63.28 293.03 2.59 -60.69 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.45 Total: 5.01 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 3.71 Total: -3.92 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -4.62 Total: -101.51 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 2.31 Total: -10.08 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.29 Total: 4.78 kcal Total: -63.28 2.59 -60.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411702482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.942 kcal (2) G-P(sol) polarization free energy of solvation -63.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds