Wall clock time and date at job start Tue Mar 31 2020 01:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03670 * 2 1 4 4 C 1.30837 * 108.20460 * 179.73964 * 3 2 1 5 5 C 1.39871 * 108.20404 * 0.44224 * 4 3 2 6 6 C 1.50700 * 126.04112 * 179.81928 * 5 4 3 7 7 S 1.81394 * 109.46854 * 269.68869 * 6 5 4 8 8 C 1.81399 * 102.99894 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47147 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00275 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99908 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99919 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99891 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46856 * 90.00518 * 13 11 9 15 15 H 1.48503 * 109.46872 * 210.00129 * 13 11 9 16 16 H 1.48501 * 109.47227 * 330.00538 * 13 11 9 17 17 C 1.34952 * 126.03729 * 180.02562 * 2 1 3 18 18 C 1.50697 * 126.12720 * 359.95565 * 17 2 1 19 19 F 1.39899 * 109.46975 * 30.02988 * 18 17 2 20 20 F 1.39902 * 109.46771 * 150.02348 * 18 17 2 21 21 F 1.39893 * 109.47402 * 270.02682 * 18 17 2 22 22 H 1.08998 * 109.46879 * 269.97346 * 1 2 3 23 23 H 1.08999 * 109.47101 * 29.97483 * 1 2 3 24 24 H 1.09008 * 109.46655 * 149.97775 * 1 2 3 25 25 H 1.07998 * 125.90002 * 180.25870 * 4 3 2 26 26 H 1.09002 * 109.46755 * 149.68793 * 6 5 4 27 27 H 1.08998 * 109.46859 * 29.68559 * 6 5 4 28 28 H 1.09001 * 109.47190 * 299.99732 * 8 7 6 29 29 H 1.09004 * 109.47089 * 59.99865 * 8 7 6 30 30 H 0.96997 * 120.00191 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0056 5 6 3.5438 -0.6666 -0.0008 6 6 4.7681 -1.5453 -0.0014 7 16 5.2587 -1.8974 -1.7118 8 6 6.7236 -2.9478 -1.5081 9 6 7.2584 -3.3323 -2.8635 10 1 6.7667 -2.9797 -3.7581 11 6 8.3758 -4.1343 -2.9616 12 7 8.8428 -4.4694 -4.1444 13 14 9.2268 -4.7436 -1.4144 14 1 8.6361 -6.0425 -1.0034 15 1 10.6761 -4.9223 -1.6844 16 1 9.0449 -3.7504 -0.3255 17 6 2.2590 -1.0913 -0.0005 18 6 1.7974 -2.5258 -0.0002 19 9 0.5671 -2.6200 -0.6595 20 9 2.7419 -3.3196 -0.6598 21 9 1.6548 -2.9696 1.3188 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8899 -0.5142 25 1 4.4054 1.3710 0.0111 26 1 4.5444 -2.4803 0.5123 27 1 5.5823 -1.0342 0.5123 28 1 7.4888 -2.4012 -0.9569 29 1 6.4515 -3.8477 -0.9566 30 1 9.6290 -5.0333 -4.2135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:15 Heat of formation + Delta-G solvation = -68.715558 kcal Electronic energy + Delta-G solvation = -19749.474929 eV Core-core repulsion = 16065.369409 eV Total energy + Delta-G solvation = -3684.105520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.35236 -47.94420 -47.71901 -41.61228 -34.04273 -33.01955 -32.41140 -29.41057 -29.05676 -26.19243 -25.28383 -22.50250 -21.50928 -20.82330 -18.73962 -18.45788 -17.92656 -16.89509 -16.08363 -15.88705 -15.40987 -14.81393 -14.62040 -14.38031 -14.23459 -14.20710 -14.10485 -13.86563 -13.73916 -13.44861 -13.17371 -12.84604 -12.61390 -12.47319 -12.21822 -11.91910 -11.04102 -10.81247 -10.59920 -10.13037 -9.87389 -9.68439 -9.03514 -8.69905 -8.55198 -6.76820 -6.16319 -4.18264 1.09288 1.84485 2.11190 2.50259 2.93270 3.22720 3.30201 3.30664 3.41132 3.68157 3.86211 4.16438 4.20636 4.32395 4.82816 4.84079 4.88784 5.12383 5.13759 5.15098 5.37466 5.75318 5.76999 6.25662 6.40825 6.60265 6.71458 7.23736 7.44555 8.32059 8.86788 9.39424 10.95836 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.004847 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.399791 B = 5775.418047 C = 6147.916677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.347 5.347 3 N -0.261 5.261 4 C 0.064 3.936 5 C -0.134 4.134 6 C -0.038 4.038 7 S -0.249 6.249 8 C 0.044 3.956 9 C -0.513 4.513 10 H 0.083 0.917 11 C 0.080 3.920 12 N -0.892 5.892 13 Si 0.878 3.122 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.266 1.266 17 C -0.012 4.012 18 C 0.538 3.462 19 F -0.176 7.176 20 F -0.138 7.138 21 F -0.172 7.172 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.199 0.801 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.100 7.242 12.167 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.131 5.131 3 N -0.082 5.082 4 C -0.121 4.121 5 C -0.147 4.147 6 C -0.186 4.186 7 S -0.021 6.021 8 C -0.104 4.104 9 C -0.551 4.551 10 H 0.101 0.899 11 C -0.125 4.125 12 N -0.530 5.530 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.190 1.190 17 C -0.142 4.142 18 C 0.481 3.519 19 F -0.158 7.158 20 F -0.119 7.119 21 F -0.153 7.153 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.216 0.784 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.381 8.444 11.128 22.299 hybrid contribution 1.525 -1.717 1.808 2.922 sum -15.856 6.727 12.936 21.541 Atomic orbital electron populations 1.22316 0.73213 1.06156 1.04184 1.48268 1.06826 1.02063 1.55934 1.77445 1.01734 1.06696 1.22354 1.23895 0.95450 0.93602 0.99200 1.19370 0.91896 0.94373 1.09080 1.21753 0.96124 1.00270 1.00498 1.86981 1.40261 1.68176 1.06700 1.21446 0.91684 0.95327 1.01927 1.20471 1.12335 1.31830 0.90510 0.89854 1.24854 0.96247 0.95238 0.96125 1.69863 1.23870 1.36345 1.22882 0.86814 0.79198 0.79799 0.83763 1.19896 1.20852 1.19030 1.20488 0.92917 0.88139 1.12666 1.17305 0.75147 0.85140 0.74298 1.93115 1.44793 1.96509 1.81353 1.93417 1.63359 1.74876 1.80276 1.93245 1.95550 1.90614 1.35883 0.90132 0.88350 0.88022 0.78434 0.89964 0.89015 0.94649 0.95116 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.19 59.85 0.67 1.33 16 2 N -0.35 -4.31 4.01 -63.88 -0.26 -4.57 16 3 N -0.26 -3.49 12.58 30.62 0.39 -3.10 16 4 C 0.06 0.83 11.96 -17.36 -0.21 0.63 16 5 C -0.13 -1.93 5.32 -105.05 -0.56 -2.49 16 6 C -0.04 -0.60 5.50 36.01 0.20 -0.40 16 7 S -0.25 -5.20 20.90 -107.50 -2.25 -7.45 16 8 C 0.04 1.05 4.77 36.01 0.17 1.22 16 9 C -0.51 -14.62 9.68 -34.44 -0.33 -14.95 16 10 H 0.08 2.62 7.96 -52.49 -0.42 2.20 16 11 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 12 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 13 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 17 C -0.01 -0.16 6.39 -82.26 -0.53 -0.69 16 18 C 0.54 7.13 3.29 36.00 0.12 7.25 16 19 F -0.18 -2.09 14.55 2.25 0.03 -2.06 16 20 F -0.14 -2.19 14.53 2.25 0.03 -2.16 16 21 F -0.17 -2.15 17.30 2.25 0.04 -2.11 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.10 0.75 5.56 -51.92 -0.29 0.47 16 25 H 0.20 1.98 8.06 -52.49 -0.42 1.55 16 26 H 0.08 1.26 7.08 -51.92 -0.37 0.90 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.04 0.82 7.20 -51.92 -0.37 0.45 16 29 H 0.03 0.72 7.57 -51.92 -0.39 0.32 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -31.84 285.78 -4.87 -36.71 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -2.70 Total: -3.66 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.57 Total: -5.92 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.90 Total: -33.88 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.10 Total: -6.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -2.25 Total: -7.45 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.84 -4.87 -36.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.010 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds