Wall clock time and date at job start Tue Mar 31 2020 01:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03670 * 2 1 4 4 C 1.30837 * 108.20460 * 179.73964 * 3 2 1 5 5 C 1.39871 * 108.20404 * 0.44224 * 4 3 2 6 6 C 1.50700 * 126.04112 * 179.81928 * 5 4 3 7 7 S 1.81394 * 109.46854 * 269.68869 * 6 5 4 8 8 C 1.81399 * 102.99894 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47147 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00275 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99908 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99919 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99891 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46856 * 90.00518 * 13 11 9 15 15 H 1.48503 * 109.46872 * 210.00129 * 13 11 9 16 16 H 1.48501 * 109.47227 * 330.00538 * 13 11 9 17 17 C 1.34952 * 126.03729 * 180.02562 * 2 1 3 18 18 C 1.50697 * 126.12720 * 359.95565 * 17 2 1 19 19 F 1.39899 * 109.46975 * 30.02988 * 18 17 2 20 20 F 1.39902 * 109.46771 * 150.02348 * 18 17 2 21 21 F 1.39893 * 109.47402 * 270.02682 * 18 17 2 22 22 H 1.08998 * 109.46879 * 269.97346 * 1 2 3 23 23 H 1.08999 * 109.47101 * 29.97483 * 1 2 3 24 24 H 1.09008 * 109.46655 * 149.97775 * 1 2 3 25 25 H 1.07998 * 125.90002 * 180.25870 * 4 3 2 26 26 H 1.09002 * 109.46755 * 149.68793 * 6 5 4 27 27 H 1.08998 * 109.46859 * 29.68559 * 6 5 4 28 28 H 1.09001 * 109.47190 * 299.99732 * 8 7 6 29 29 H 1.09004 * 109.47089 * 59.99865 * 8 7 6 30 30 H 0.96997 * 120.00191 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0056 5 6 3.5438 -0.6666 -0.0008 6 6 4.7681 -1.5453 -0.0014 7 16 5.2587 -1.8974 -1.7118 8 6 6.7236 -2.9478 -1.5081 9 6 7.2584 -3.3323 -2.8635 10 1 6.7667 -2.9797 -3.7581 11 6 8.3758 -4.1343 -2.9616 12 7 8.8428 -4.4694 -4.1444 13 14 9.2268 -4.7436 -1.4144 14 1 8.6361 -6.0425 -1.0034 15 1 10.6761 -4.9223 -1.6844 16 1 9.0449 -3.7504 -0.3255 17 6 2.2590 -1.0913 -0.0005 18 6 1.7974 -2.5258 -0.0002 19 9 0.5671 -2.6200 -0.6595 20 9 2.7419 -3.3196 -0.6598 21 9 1.6548 -2.9696 1.3188 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8899 -0.5142 25 1 4.4054 1.3710 0.0111 26 1 4.5444 -2.4803 0.5123 27 1 5.5823 -1.0342 0.5123 28 1 7.4888 -2.4012 -0.9569 29 1 6.4515 -3.8477 -0.9566 30 1 9.6290 -5.0333 -4.2135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:15 Heat of formation + Delta-G solvation = -88.661553 kcal Electronic energy + Delta-G solvation = -19750.339852 eV Core-core repulsion = 16065.369409 eV Total energy + Delta-G solvation = -3684.970443 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.40216 -48.95853 -48.82445 -42.60584 -35.16822 -34.96973 -33.45945 -31.41199 -30.12022 -27.10107 -26.39248 -24.53147 -22.48052 -21.89447 -19.77809 -19.48231 -19.14699 -18.84470 -17.28843 -16.86797 -16.79627 -16.10979 -15.79886 -15.71721 -15.43458 -15.23208 -15.19926 -15.10520 -14.94722 -14.79471 -14.58597 -14.24411 -14.06427 -13.65200 -13.30553 -13.07077 -12.63110 -12.35061 -12.13240 -11.91136 -11.74689 -10.87367 -10.84858 -10.71394 -9.65994 -8.41889 -8.33932 -6.43319 0.00883 0.84879 0.91592 1.36976 1.38771 1.49442 1.53629 1.68139 2.07059 2.32639 2.38745 2.82896 2.99435 3.13083 3.26418 3.77051 4.02665 4.10291 4.27351 4.43346 4.57149 4.60382 4.66412 4.67781 4.82359 5.27631 5.38123 5.50459 6.10687 6.25418 6.60782 7.18977 8.82081 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.004847 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.399791 B = 5775.418047 C = 6147.916677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.343 5.343 3 N -0.274 5.274 4 C 0.067 3.933 5 C -0.158 4.158 6 C -0.016 4.016 7 S -0.289 6.289 8 C 0.047 3.953 9 C -0.528 4.528 10 H 0.034 0.966 11 C 0.018 3.982 12 N -0.942 5.942 13 Si 0.953 3.047 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.241 1.241 17 C -0.014 4.014 18 C 0.541 3.459 19 F -0.168 7.168 20 F -0.156 7.156 21 F -0.165 7.165 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.223 0.777 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 7.792 14.832 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.126 5.126 3 N -0.096 5.096 4 C -0.119 4.119 5 C -0.172 4.172 6 C -0.164 4.164 7 S -0.060 6.060 8 C -0.101 4.101 9 C -0.566 4.566 10 H 0.052 0.948 11 C -0.181 4.181 12 N -0.582 5.582 13 Si 0.775 3.225 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.164 1.164 17 C -0.146 4.146 18 C 0.485 3.515 19 F -0.149 7.149 20 F -0.137 7.137 21 F -0.147 7.147 22 H 0.121 0.879 23 H 0.132 0.868 24 H 0.125 0.875 25 H 0.239 0.761 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.105 9.015 13.793 24.481 hybrid contribution 1.539 -1.811 0.935 2.554 sum -16.566 7.204 14.728 23.308 Atomic orbital electron populations 1.22694 0.70931 1.07228 1.06011 1.48669 1.08145 1.01386 1.54409 1.77440 1.02055 1.07157 1.22924 1.24298 0.96141 0.93277 0.98142 1.19353 0.91601 0.94942 1.11258 1.21702 0.97452 1.01137 0.96129 1.87039 1.38997 1.67558 1.12448 1.21220 0.93293 0.96402 0.99149 1.20684 1.12614 1.32043 0.91262 0.94809 1.25909 0.96955 0.95180 1.00076 1.70025 1.24779 1.37500 1.25857 0.85623 0.77692 0.79858 0.79321 1.18852 1.20378 1.16405 1.20598 0.93255 0.88576 1.12123 1.17231 0.75090 0.84785 0.74403 1.93133 1.44096 1.96467 1.81231 1.93381 1.64214 1.75388 1.80738 1.93256 1.95500 1.90542 1.35362 0.87898 0.86792 0.87490 0.76079 0.89461 0.86788 0.93481 0.94306 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 11.19 127.77 1.43 2.37 16 2 N -0.34 -7.72 4.01 -356.01 -1.43 -9.15 16 3 N -0.27 -6.70 12.58 -57.02 -0.72 -7.42 16 4 C 0.07 1.57 11.96 85.24 1.02 2.59 16 5 C -0.16 -4.24 5.32 -20.14 -0.11 -4.34 16 6 C -0.02 -0.47 5.50 71.24 0.39 -0.07 16 7 S -0.29 -11.96 20.90 -56.49 -1.18 -13.14 16 8 C 0.05 2.23 4.77 71.24 0.34 2.57 16 9 C -0.53 -30.87 9.68 25.60 0.25 -30.63 16 10 H 0.03 2.24 7.96 -2.91 -0.02 2.22 16 11 C 0.02 1.06 5.47 84.66 0.46 1.53 16 12 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 13 Si 0.95 42.53 27.47 68.60 1.88 44.41 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 17 C -0.01 -0.35 6.39 41.40 0.26 -0.08 16 18 C 0.54 13.48 3.29 71.24 0.23 13.72 16 19 F -0.17 -3.70 14.55 44.97 0.65 -3.05 16 20 F -0.16 -4.81 14.53 44.97 0.65 -4.16 16 21 F -0.17 -3.80 17.30 44.97 0.78 -3.03 16 22 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.11 1.33 5.56 -2.38 -0.01 1.32 16 25 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.09 2.49 7.08 -2.39 -0.02 2.47 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.83 16 28 H 0.05 2.09 7.20 -2.39 -0.02 2.08 16 29 H 0.04 1.75 7.57 -2.39 -0.02 1.73 16 30 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -70.24 285.78 6.35 -63.89 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.12 Total: 2.31 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.28 Total: -12.34 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.85 Total: -74.90 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 2.09 Total: -10.23 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Atomic # 16 Polarization: -11.96 SS G_CDS: -1.18 Total: -13.14 kcal Total: -70.24 6.35 -63.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.772 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds