Wall clock time and date at job start Tue Mar 31 2020 01:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00337 * 2 1 4 4 H 1.48504 * 109.46810 * 239.99948 * 3 2 1 5 5 H 1.48493 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47116 * 120.00214 * 3 2 1 7 7 C 1.37885 * 119.99504 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00185 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47050 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99772 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00004 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99809 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99720 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46730 * 179.97438 * 14 13 11 16 16 C 1.34331 * 125.80755 * 94.99746 * 15 14 13 17 17 N 1.38926 * 107.12220 * 179.73806 * 16 15 14 18 18 C 1.37486 * 139.53714 * 180.21625 * 17 16 15 19 19 C 1.30909 * 116.32362 * 180.02562 * 18 17 16 20 20 S 1.75773 * 109.81852 * 359.97438 * 19 18 17 21 21 C 1.35147 * 106.52943 * 0.24591 * 17 16 15 22 22 N 1.32356 * 108.82339 * 359.97438 * 21 17 16 23 23 H 0.97001 * 119.99672 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.47237 * 60.00208 * 9 7 2 25 25 H 1.09000 * 109.47270 * 300.00279 * 9 7 2 26 26 H 0.96996 * 120.00473 * 0.02562 * 10 9 7 27 27 H 0.97001 * 119.99730 * 359.97438 * 13 11 10 28 28 H 1.08992 * 109.47563 * 59.99886 * 14 13 11 29 29 H 1.08996 * 109.46953 * 299.99072 * 14 13 11 30 30 H 1.08002 * 126.44106 * 0.02562 * 16 15 14 31 31 H 1.08003 * 121.83610 * 0.04928 * 18 17 16 32 32 H 1.08004 * 125.08820 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0015 11 6 1.7535 -4.8835 0.0019 12 8 0.5581 -5.1055 0.0029 13 7 2.6292 -5.9079 0.0022 14 6 2.1408 -7.2891 0.0020 15 6 3.3129 -8.2364 0.0018 16 6 3.8646 -8.8043 1.0869 17 7 4.9087 -9.6060 0.6428 18 6 5.8696 -10.4483 1.1502 19 6 6.6730 -11.0042 0.2788 20 16 6.2510 -10.4748 -1.3433 21 6 4.9443 -9.4807 -0.7024 22 7 3.9829 -8.6530 -1.0798 23 1 -0.4850 0.8401 -0.0004 24 1 0.6239 -2.5575 -0.8881 25 1 0.6245 -2.5563 0.8919 26 1 3.1565 -3.4356 0.0010 27 1 3.5829 -5.7307 0.0017 28 1 1.5355 -7.4604 -0.8881 29 1 1.5351 -7.4603 0.8919 30 1 3.5520 -8.6675 2.1116 31 1 5.9565 -10.6412 2.2093 32 1 7.4751 -11.6859 0.5205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426412101.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:27 Heat of formation + Delta-G solvation = 43.923947 kcal Electronic energy + Delta-G solvation = -18113.223741 eV Core-core repulsion = 15008.152128 eV Total energy + Delta-G solvation = -3105.071613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.71888 -40.82983 -37.89773 -36.23274 -35.51375 -34.30427 -31.80445 -31.19628 -29.18399 -26.99335 -25.06474 -24.51065 -21.90962 -21.87575 -21.52761 -19.80119 -19.33935 -18.05218 -17.51240 -17.02318 -16.97032 -16.44352 -16.40030 -15.80476 -15.54036 -15.02205 -14.93486 -14.41531 -14.33445 -14.00615 -13.54602 -13.54330 -12.91663 -12.86141 -12.66398 -12.21785 -12.20677 -11.54759 -11.48232 -11.33837 -11.25644 -10.77857 -10.28649 -9.93433 -9.58433 -8.73173 -8.26509 -6.42950 -0.14461 -0.07004 0.73566 1.24221 1.35037 1.44739 1.48885 1.56092 1.57146 2.18364 2.25772 2.43129 3.08092 3.30134 3.44215 3.59710 4.08442 4.20101 4.39919 4.52849 4.60980 4.67756 5.01499 5.10236 5.28846 5.29934 5.46171 5.50328 5.68968 5.82385 5.86870 6.24306 6.61609 6.68278 7.25359 7.29840 7.71818 8.85728 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.002766 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.041909 B =10119.862702 C =10511.205104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.645 6.645 13 N -0.728 5.728 14 C 0.231 3.769 15 C 0.008 3.992 16 C -0.011 4.011 17 N -0.409 5.409 18 C 0.031 3.969 19 C -0.198 4.198 20 S 0.184 5.816 21 C 0.108 3.892 22 N -0.490 5.490 23 H 0.269 0.731 24 H -0.015 1.015 25 H -0.011 1.011 26 H 0.403 0.597 27 H 0.406 0.594 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.220 0.780 31 H 0.221 0.779 32 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.502 -25.228 4.546 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.100 0.900 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.395 3.605 12 O -0.528 6.528 13 N -0.385 5.385 14 C 0.106 3.894 15 C -0.122 4.122 16 C -0.146 4.146 17 N -0.088 5.088 18 C -0.095 4.095 19 C -0.334 4.334 20 S 0.432 5.568 21 C -0.258 4.258 22 N -0.214 5.214 23 H 0.078 0.922 24 H 0.003 0.997 25 H 0.007 0.993 26 H 0.238 0.762 27 H 0.241 0.759 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.236 0.764 31 H 0.238 0.762 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 18.603 -25.376 2.540 31.567 hybrid contribution 0.096 1.135 1.800 2.130 sum 18.699 -24.241 4.340 30.921 Atomic orbital electron populations 1.70139 1.08244 1.28638 1.49865 1.26070 0.95805 1.03845 0.93857 0.85185 0.77887 0.76542 0.79444 1.18831 1.20968 1.18577 1.21575 0.94268 0.90550 1.53058 0.89975 1.18423 0.88071 0.83194 0.94081 1.45307 1.10877 1.03799 1.77700 1.16210 0.84968 0.81443 0.77917 1.90838 1.16429 1.84894 1.60622 1.44897 1.08942 1.04208 1.80455 1.19146 0.90814 0.76536 1.02916 1.20515 1.00186 1.02692 0.88805 1.23044 0.91390 0.98414 1.01731 1.44199 1.24243 1.32901 1.07485 1.21095 0.90108 0.94637 1.03661 1.25699 1.06597 1.07828 0.93321 1.84940 1.23227 1.42454 1.06149 1.26821 1.05866 1.07202 0.85952 1.70412 1.06814 1.13241 1.30976 0.92205 0.99727 0.99277 0.76166 0.75898 0.92273 0.88871 0.76367 0.76227 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.99 43.15 29.54 68.60 2.03 45.18 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.56 -31.23 9.28 25.60 0.24 -30.99 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.29 16.38 5.43 85.63 0.46 16.84 16 10 N -0.72 -33.00 5.55 -482.29 -2.68 -35.68 16 11 C 0.69 30.84 8.57 179.05 1.53 32.38 16 12 O -0.65 -34.63 16.34 -3.96 -0.06 -34.70 16 13 N -0.73 -24.01 5.55 -482.30 -2.68 -26.69 16 14 C 0.23 6.84 6.20 85.63 0.53 7.37 16 15 C 0.01 0.21 6.43 41.36 0.27 0.48 16 16 C -0.01 -0.20 11.93 82.67 0.99 0.78 16 17 N -0.41 -7.06 3.19 -355.67 -1.13 -8.19 16 18 C 0.03 0.25 11.26 83.86 0.94 1.19 16 19 C -0.20 -1.07 11.11 67.87 0.75 -0.31 16 20 S 0.18 2.54 23.37 -56.49 -1.32 1.22 16 21 C 0.11 2.46 8.93 179.68 1.60 4.07 16 22 N -0.49 -14.43 11.33 -184.82 -2.09 -16.52 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.40 15.43 8.34 -92.71 -0.77 14.66 16 27 H 0.41 11.37 8.48 -92.71 -0.79 10.59 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.22 -0.04 8.06 -2.91 -0.02 -0.07 16 32 H 0.24 -0.89 8.06 -2.91 -0.02 -0.92 16 Total: -1.00 -83.18 303.52 -0.25 -83.44 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.38 Total: 16.40 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 7.78 Total: 32.48 kcal Atomic # 7 Polarization: -135.72 SS G_CDS: -8.30 Total: -144.01 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.06 Total: -34.70 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.32 Total: 1.22 kcal Total: -83.18 -0.25 -83.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426412101.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.359 kcal (2) G-P(sol) polarization free energy of solvation -83.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds