Wall clock time and date at job start Tue Mar 31 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48494 * 109.47051 * 239.99903 * 3 2 1 5 5 H 1.48501 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47226 * 119.99318 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10 14 14 N 1.27904 * 124.23039 * 89.70118 * 13 12 11 15 15 C 1.34724 * 117.83948 * 179.77212 * 14 13 12 16 16 C 1.40954 * 129.65806 * 180.21504 * 15 14 13 17 17 C 1.36171 * 120.46469 * 180.32344 * 16 15 14 18 18 C 1.38984 * 120.74684 * 359.97438 * 17 16 15 19 19 F 1.35101 * 119.98933 * 180.02562 * 18 17 16 20 20 C 1.37853 * 120.01835 * 359.97438 * 18 17 16 21 21 C 1.39339 * 119.93077 * 0.02562 * 20 18 17 22 22 S 1.70646 * 124.23774 * 269.99878 * 13 12 11 23 23 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 25 25 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 26 26 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 27 27 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 28 28 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 29 29 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 30 30 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 31 31 H 1.08001 * 119.76873 * 0.31854 * 16 15 14 32 32 H 1.07999 * 119.62794 * 179.97438 * 17 16 15 33 33 H 1.07999 * 120.03544 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6470 -7.3604 0.0018 14 7 1.2665 -7.9711 -1.0557 15 6 0.5710 -9.1151 -0.9058 16 6 0.0408 -9.9803 -1.8841 17 6 -0.6456 -11.0980 -1.5183 18 6 -0.8363 -11.4076 -0.1768 19 9 -1.5193 -12.5208 0.1688 20 6 -0.3277 -10.5797 0.8010 21 6 0.3770 -9.4322 0.4430 22 16 1.1444 -8.1785 1.4125 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6043 0.8906 27 1 2.8718 -3.6044 -0.8894 28 1 0.8744 -4.9841 0.7828 29 1 3.0631 -6.0353 -0.8882 30 1 3.0630 -6.0345 0.8918 31 1 0.1799 -9.7552 -2.9312 32 1 -1.0464 -11.7514 -2.2792 33 1 -0.4754 -10.8202 1.8435 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428874738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:17 Heat of formation + Delta-G solvation = -14.865226 kcal Electronic energy + Delta-G solvation = -17789.904940 eV Core-core repulsion = 14662.364076 eV Total energy + Delta-G solvation = -3127.540864 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.04203 -41.44450 -38.43465 -37.12516 -35.04204 -32.45245 -32.25357 -30.28117 -27.85834 -25.76419 -24.94625 -23.56773 -22.56410 -21.95731 -19.73033 -18.69826 -18.50663 -17.77261 -16.96089 -16.82800 -16.49555 -16.35538 -16.10888 -15.47054 -15.12174 -15.07613 -14.67058 -14.48217 -14.15914 -13.93543 -13.54659 -13.38331 -12.92442 -12.80732 -12.60287 -12.41635 -11.95722 -11.95595 -11.44853 -11.32958 -11.31332 -10.72784 -10.54952 -9.73538 -9.38654 -9.25332 -8.19061 -6.30660 -0.83450 -0.10569 0.06656 0.54912 1.06804 1.42236 1.45449 1.53217 2.39023 2.42864 2.70780 3.07082 3.14806 3.34112 3.44974 3.77348 3.92961 3.99427 4.19702 4.32807 4.46831 4.58471 4.64133 4.74786 4.78524 4.95654 5.01749 5.06430 5.44160 5.55953 5.65343 5.76124 6.04324 6.19976 6.38490 6.51826 6.86820 7.38805 8.93005 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042614 B = 0.002717 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.910339 B =10304.356222 C =10387.654802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.086 3.914 11 N -0.694 5.694 12 C 0.130 3.870 13 C 0.090 3.910 14 N -0.476 5.476 15 C 0.048 3.952 16 C -0.038 4.038 17 C -0.127 4.127 18 C 0.114 3.886 19 F -0.131 7.131 20 C -0.110 4.110 21 C -0.180 4.180 22 S 0.149 5.851 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.007 1.007 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.341 0.659 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 -24.710 1.598 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.007 4.007 10 C -0.042 4.042 11 N -0.326 5.326 12 C -0.002 4.002 13 C -0.195 4.195 14 N -0.190 5.190 15 C -0.073 4.073 16 C -0.058 4.058 17 C -0.148 4.148 18 C 0.091 3.909 19 F -0.109 7.109 20 C -0.134 4.134 21 C -0.299 4.299 22 S 0.406 5.594 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.197 0.803 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.682 -24.148 1.480 24.252 hybrid contribution -0.104 0.415 0.232 0.487 sum 1.578 -23.732 1.712 23.846 Atomic orbital electron populations 1.70109 1.07913 1.27857 1.51444 1.25992 0.95740 1.03462 0.94667 0.85467 0.78203 0.77908 0.79260 1.19177 1.21061 1.18921 1.21593 0.93709 0.92041 1.50881 0.91685 1.18921 0.94368 0.92319 0.95074 1.21831 0.95620 0.86945 0.99820 1.60434 1.20119 1.01485 1.50596 1.20643 0.92410 0.83070 1.04045 1.26761 1.00577 1.00919 0.91240 1.66171 1.13007 1.07423 1.32364 1.19664 1.01161 0.93678 0.92792 1.20532 0.94383 0.91293 0.99633 1.20998 1.00327 0.98393 0.95095 1.17503 0.95473 0.84512 0.93461 1.91538 1.77026 1.49377 1.92970 1.20353 0.99177 0.92578 1.01249 1.23820 1.07094 1.02012 0.97013 1.83805 1.51245 1.15372 1.09016 0.92788 0.99059 0.98878 0.94755 0.91632 0.84161 0.87892 0.90387 0.82161 0.80333 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.62 5.23 29.85 0.16 1.78 16 10 C 0.09 3.46 5.62 86.30 0.49 3.95 16 11 N -0.69 -24.21 6.49 -517.92 -3.36 -27.57 16 12 C 0.13 3.56 6.24 85.55 0.53 4.09 16 13 C 0.09 2.45 6.80 88.68 0.60 3.05 16 14 N -0.48 -14.18 10.57 -182.51 -1.93 -16.11 16 15 C 0.05 1.22 7.00 39.77 0.28 1.50 16 16 C -0.04 -0.72 10.05 22.45 0.23 -0.49 16 17 C -0.13 -1.86 9.92 21.97 0.22 -1.65 16 18 C 0.11 1.92 7.30 22.36 0.16 2.08 16 19 F -0.13 -2.18 17.27 44.97 0.78 -1.41 16 20 C -0.11 -2.01 10.05 22.44 0.23 -1.79 16 21 C -0.18 -4.10 6.56 22.94 0.15 -3.95 16 22 S 0.15 3.28 23.11 -56.49 -1.31 1.97 16 23 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.34 11.54 8.72 -89.69 -0.78 10.76 16 29 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -67.60 308.70 0.58 -67.02 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.36 Total: 8.40 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 3.73 Total: -21.40 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -5.01 Total: -100.52 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.78 Total: -1.41 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.31 Total: 1.97 kcal Total: -67.60 0.58 -67.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428874738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.154 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds