Wall clock time and date at job start Tue Mar 31 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46944 * 2 1 4 4 C 1.36939 * 119.99919 * 275.51557 * 3 2 1 5 5 H 1.08000 * 119.99959 * 33.63099 * 4 3 2 6 6 C 1.38815 * 120.00478 * 213.62950 * 4 3 2 7 7 N 1.31620 * 119.99402 * 23.37285 * 6 4 3 8 8 Si 1.86798 * 120.00305 * 203.38008 * 6 4 3 9 9 H 1.48502 * 109.47091 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47611 * 119.99813 * 8 6 4 11 11 H 1.48507 * 109.46822 * 239.99878 * 8 6 4 12 12 C 1.46499 * 120.00275 * 95.52131 * 3 2 1 13 13 C 1.50695 * 109.46952 * 269.99647 * 12 3 2 14 14 C 1.33648 * 126.03601 * 89.99904 * 13 12 3 15 15 N 1.31779 * 114.49783 * 180.02562 * 14 13 12 16 16 C 1.29028 * 117.12662 * 359.97438 * 15 14 13 17 17 C 1.50700 * 124.91533 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47281 * 5.00979 * 17 16 15 19 19 F 1.39900 * 109.47102 * 125.00525 * 17 16 15 20 20 F 1.39901 * 109.47399 * 245.00723 * 17 16 15 21 21 S 1.70975 * 110.16835 * 0.02562 * 16 15 14 22 22 H 1.09000 * 109.47206 * 300.00551 * 1 2 3 23 23 H 1.09005 * 109.47020 * 60.00349 * 1 2 3 24 24 H 1.08999 * 109.47149 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47460 * 239.99922 * 2 1 3 26 26 H 1.08998 * 109.46915 * 120.00008 * 2 1 3 27 27 H 0.97006 * 119.99257 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47054 * 150.00159 * 12 3 2 29 29 H 1.08997 * 109.47245 * 29.99548 * 12 3 2 30 30 H 1.07991 * 122.74841 * 359.73245 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1390 2.0647 -1.1804 5 1 1.4404 1.8827 -1.9837 6 6 3.1593 2.9916 -1.3447 7 7 4.2502 2.9059 -0.6133 8 14 2.9839 4.3605 -2.6035 9 1 1.6735 4.2359 -3.2910 10 1 3.0609 5.6758 -1.9186 11 1 4.0782 4.2577 -3.6022 12 6 2.3776 2.0312 1.2628 13 6 1.1674 2.7255 1.8324 14 6 0.2730 2.1880 2.6675 15 7 -0.7000 3.0021 3.0239 16 6 -0.6759 4.1966 2.5365 17 6 -1.6971 5.2666 2.8249 18 9 -2.6020 4.8011 3.7851 19 9 -1.0512 6.4095 3.3084 20 9 -2.3863 5.5826 1.6492 21 16 0.6814 4.3891 1.5148 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.9630 3.5538 -0.7278 28 1 3.1653 2.7629 1.0836 29 1 2.7323 1.2811 1.9695 30 1 0.3396 1.1686 3.0175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447737896.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:03 Heat of formation + Delta-G solvation = -85.850551 kcal Electronic energy + Delta-G solvation = -20051.161919 eV Core-core repulsion = 16366.313370 eV Total energy + Delta-G solvation = -3684.848549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.01557 -47.56536 -47.49125 -39.30301 -36.33870 -32.21221 -31.54740 -29.32619 -27.69756 -25.13615 -23.85037 -22.96573 -20.71401 -20.01239 -18.83543 -18.42792 -17.54312 -16.90914 -16.47251 -15.17332 -14.59677 -14.45286 -14.27226 -14.23243 -13.95812 -13.89290 -13.68014 -13.66549 -13.62561 -13.04822 -12.61793 -12.37173 -12.09616 -11.55716 -11.42575 -11.10975 -10.92233 -10.68487 -10.34533 -10.17829 -10.11581 -9.43019 -8.88728 -8.74238 -8.58131 -7.01815 -6.16510 -3.63010 0.85285 1.55908 2.18167 2.70016 3.05718 3.19457 3.29611 3.32434 3.69187 4.23083 4.34689 4.47902 4.96725 5.16987 5.25643 5.73380 5.83337 5.86998 6.18911 6.21652 6.40631 6.45912 6.50025 6.70889 6.97150 7.19320 7.52740 7.89776 8.12433 8.79634 9.42189 9.96556 10.83008 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.007015 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.870860 B = 3990.584138 C = 4781.660936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.140 3.860 3 N -0.565 5.565 4 C -0.252 4.252 5 H 0.069 0.931 6 C 0.012 3.988 7 N -0.871 5.871 8 Si 0.890 3.110 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.285 1.285 12 C 0.191 3.809 13 C -0.147 4.147 14 C -0.011 4.011 15 N -0.413 5.413 16 C -0.143 4.143 17 C 0.557 3.443 18 F -0.163 7.163 19 F -0.172 7.172 20 F -0.171 7.171 21 S 0.209 5.791 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.262 0.738 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 1.683 5.358 8.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 N -0.283 5.283 4 C -0.383 4.383 5 H 0.087 0.913 6 C -0.190 4.190 7 N -0.512 5.512 8 Si 0.718 3.282 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.211 1.211 12 C 0.062 3.938 13 C -0.274 4.274 14 C -0.164 4.164 15 N -0.128 5.128 16 C -0.417 4.417 17 C 0.499 3.501 18 F -0.145 7.145 19 F -0.153 7.153 20 F -0.153 7.153 21 S 0.462 5.538 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.965 2.487 5.105 8.236 hybrid contribution -0.457 -0.004 -0.277 0.534 sum -6.423 2.483 4.829 8.410 Atomic orbital electron populations 1.22366 0.99520 0.99520 1.01719 1.20958 0.91968 0.86025 0.99586 1.43970 1.74341 1.08227 1.01723 1.19234 1.08057 1.18638 0.92325 0.91320 1.25152 0.93978 1.01262 0.98595 1.69963 1.04469 1.35223 1.41512 0.86396 0.78398 0.82245 0.81138 1.19526 1.20573 1.21105 1.19925 0.90614 0.97025 0.86257 1.28344 1.06416 0.94816 0.97869 1.21460 0.91700 1.00801 1.02452 1.65843 1.24620 1.00799 1.21566 1.26218 1.06253 0.98421 1.10850 1.16990 0.79186 0.79471 0.74413 1.93205 1.68591 1.88506 1.64175 1.93217 1.81527 1.52329 1.88226 1.93229 1.80583 1.93364 1.48075 1.84226 1.16245 1.12265 1.41083 0.93302 0.93179 0.94090 0.92900 0.94043 0.92814 0.86543 0.92124 0.80818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.21 37.16 0.38 -2.58 16 2 C 0.14 2.64 6.44 -4.04 -0.03 2.61 16 3 N -0.57 -12.42 2.45 -174.61 -0.43 -12.85 16 4 C -0.25 -6.15 9.48 -15.06 -0.14 -6.30 16 5 H 0.07 1.71 7.93 -52.49 -0.42 1.30 16 6 C 0.01 0.30 4.94 -17.43 -0.09 0.22 16 7 N -0.87 -22.22 11.32 55.49 0.63 -21.60 16 8 Si 0.89 19.76 29.61 -169.99 -5.03 14.73 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.19 3.93 5.86 -5.20 -0.03 3.90 16 13 C -0.15 -2.81 6.14 -35.92 -0.22 -3.03 16 14 C -0.01 -0.19 9.66 -19.18 -0.19 -0.38 16 15 N -0.41 -7.74 10.25 -11.86 -0.12 -7.86 16 16 C -0.14 -2.61 6.72 -13.46 -0.09 -2.70 16 17 C 0.56 9.16 3.52 36.01 0.13 9.29 16 18 F -0.16 -2.68 17.09 2.25 0.04 -2.64 16 19 F -0.17 -2.65 17.30 2.25 0.04 -2.61 16 20 F -0.17 -2.77 17.30 2.25 0.04 -2.73 16 21 S 0.21 3.92 23.18 -107.50 -2.49 1.43 16 22 H 0.05 0.86 6.39 -51.93 -0.33 0.53 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 26 H 0.04 0.70 7.83 -51.93 -0.41 0.30 16 27 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 28 H 0.12 2.71 5.30 -51.93 -0.28 2.44 16 29 H 0.06 1.14 7.86 -51.93 -0.41 0.73 16 30 H 0.17 2.71 8.03 -52.49 -0.42 2.29 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -25.21 288.82 -5.91 -31.13 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -2.66 Total: -2.39 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.28 Total: 1.03 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.08 Total: -42.31 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.12 Total: -7.98 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.49 Total: 1.43 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -25.21 -5.91 -31.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447737896.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.725 kcal (2) G-P(sol) polarization free energy of solvation -25.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds