Wall clock time and date at job start Tue Mar 31 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46944 * 2 1 4 4 C 1.36939 * 119.99919 * 275.51557 * 3 2 1 5 5 H 1.08000 * 119.99959 * 33.63099 * 4 3 2 6 6 C 1.38815 * 120.00478 * 213.62950 * 4 3 2 7 7 N 1.31620 * 119.99402 * 23.37285 * 6 4 3 8 8 Si 1.86798 * 120.00305 * 203.38008 * 6 4 3 9 9 H 1.48502 * 109.47091 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47611 * 119.99813 * 8 6 4 11 11 H 1.48507 * 109.46822 * 239.99878 * 8 6 4 12 12 C 1.46499 * 120.00275 * 95.52131 * 3 2 1 13 13 C 1.50695 * 109.46952 * 269.99647 * 12 3 2 14 14 C 1.33648 * 126.03601 * 89.99904 * 13 12 3 15 15 N 1.31779 * 114.49783 * 180.02562 * 14 13 12 16 16 C 1.29028 * 117.12662 * 359.97438 * 15 14 13 17 17 C 1.50700 * 124.91533 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47281 * 5.00979 * 17 16 15 19 19 F 1.39900 * 109.47102 * 125.00525 * 17 16 15 20 20 F 1.39901 * 109.47399 * 245.00723 * 17 16 15 21 21 S 1.70975 * 110.16835 * 0.02562 * 16 15 14 22 22 H 1.09000 * 109.47206 * 300.00551 * 1 2 3 23 23 H 1.09005 * 109.47020 * 60.00349 * 1 2 3 24 24 H 1.08999 * 109.47149 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47460 * 239.99922 * 2 1 3 26 26 H 1.08998 * 109.46915 * 120.00008 * 2 1 3 27 27 H 0.97006 * 119.99257 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47054 * 150.00159 * 12 3 2 29 29 H 1.08997 * 109.47245 * 29.99548 * 12 3 2 30 30 H 1.07991 * 122.74841 * 359.73245 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1390 2.0647 -1.1804 5 1 1.4404 1.8827 -1.9837 6 6 3.1593 2.9916 -1.3447 7 7 4.2502 2.9059 -0.6133 8 14 2.9839 4.3605 -2.6035 9 1 1.6735 4.2359 -3.2910 10 1 3.0609 5.6758 -1.9186 11 1 4.0782 4.2577 -3.6022 12 6 2.3776 2.0312 1.2628 13 6 1.1674 2.7255 1.8324 14 6 0.2730 2.1880 2.6675 15 7 -0.7000 3.0021 3.0239 16 6 -0.6759 4.1966 2.5365 17 6 -1.6971 5.2666 2.8249 18 9 -2.6020 4.8011 3.7851 19 9 -1.0512 6.4095 3.3084 20 9 -2.3863 5.5826 1.6492 21 16 0.6814 4.3891 1.5148 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.9630 3.5538 -0.7278 28 1 3.1653 2.7629 1.0836 29 1 2.7323 1.2811 1.9695 30 1 0.3396 1.1686 3.0175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447737896.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:03 Heat of formation + Delta-G solvation = -98.360999 kcal Electronic energy + Delta-G solvation = -20051.704412 eV Core-core repulsion = 16366.313370 eV Total energy + Delta-G solvation = -3685.391042 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.33243 -48.86858 -48.80917 -40.80738 -37.95146 -33.94352 -33.04408 -30.84783 -29.23997 -26.77924 -25.35500 -24.46539 -22.28176 -21.45360 -20.24549 -19.74334 -19.07526 -18.47761 -17.98453 -16.90957 -16.02544 -15.89794 -15.70469 -15.62337 -15.56916 -15.25926 -15.12508 -14.97213 -14.96847 -14.56528 -14.16508 -13.76505 -13.60334 -13.25537 -12.96677 -12.75064 -12.54208 -12.38482 -12.04661 -11.78584 -11.62686 -10.94314 -10.63424 -10.31927 -10.07428 -8.75390 -7.96477 -5.48966 -0.62893 0.05506 0.68386 1.31914 1.40709 1.48831 1.55042 1.60613 2.31759 2.45242 2.99648 3.13569 3.14293 3.67274 3.73867 4.19897 4.33912 4.43048 4.76966 4.79088 4.90753 5.04717 5.08024 5.26740 5.50904 5.55371 5.66603 6.35271 6.40384 7.03903 7.71554 8.21558 9.00696 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.007015 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.870860 B = 3990.584138 C = 4781.660936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 N -0.582 5.582 4 C -0.260 4.260 5 H 0.056 0.944 6 C -0.020 4.020 7 N -0.900 5.900 8 Si 0.929 3.071 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.288 1.288 12 C 0.197 3.803 13 C -0.157 4.157 14 C 0.006 3.994 15 N -0.423 5.423 16 C -0.132 4.132 17 C 0.563 3.437 18 F -0.160 7.160 19 F -0.164 7.164 20 F -0.167 7.167 21 S 0.203 5.797 22 H 0.045 0.955 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.258 0.742 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 1.440 6.433 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.012 3.988 3 N -0.301 5.301 4 C -0.391 4.391 5 H 0.073 0.927 6 C -0.219 4.219 7 N -0.542 5.542 8 Si 0.756 3.244 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.215 1.215 12 C 0.068 3.932 13 C -0.283 4.283 14 C -0.147 4.147 15 N -0.139 5.139 16 C -0.407 4.407 17 C 0.505 3.495 18 F -0.141 7.141 19 F -0.145 7.145 20 F -0.149 7.149 21 S 0.455 5.545 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.234 2.237 6.180 9.774 hybrid contribution -0.178 0.088 -0.450 0.492 sum -7.412 2.325 5.730 9.652 Atomic orbital electron populations 1.22211 0.98132 1.00933 1.00466 1.21069 0.92940 0.84745 1.00075 1.44069 1.75099 1.09501 1.01413 1.19211 1.07592 1.19009 0.93307 0.92679 1.25528 0.93952 1.02599 0.99869 1.70032 1.05017 1.35976 1.43212 0.85804 0.77964 0.80783 0.79812 1.19543 1.20567 1.21485 1.19700 0.90309 0.96917 0.86267 1.28124 1.06035 0.95088 0.99092 1.21842 0.90417 1.01566 1.00881 1.65957 1.24994 1.01017 1.21947 1.26587 1.05696 0.98655 1.09781 1.16790 0.78902 0.79234 0.74595 1.93218 1.68383 1.88518 1.64029 1.93239 1.81403 1.51745 1.88114 1.93243 1.80426 1.93269 1.47947 1.84316 1.16628 1.12602 1.40916 0.93571 0.95244 0.91301 0.93996 0.91949 0.93237 0.89108 0.90427 0.78184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 10.21 71.98 0.73 -4.38 16 2 C 0.14 4.93 6.44 86.38 0.56 5.49 16 3 N -0.58 -25.23 2.45 -706.35 -1.73 -26.96 16 4 C -0.26 -12.81 9.48 84.03 0.80 -12.02 16 5 H 0.06 2.80 7.93 -2.91 -0.02 2.78 16 6 C -0.02 -1.01 4.94 84.86 0.42 -0.59 16 7 N -0.90 -46.61 11.32 21.65 0.25 -46.36 16 8 Si 0.93 40.88 29.61 68.60 2.03 42.91 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.20 7.94 5.86 85.63 0.50 8.44 16 13 C -0.16 -5.74 6.14 24.64 0.15 -5.58 16 14 C 0.01 0.19 9.66 83.66 0.81 0.99 16 15 N -0.42 -14.69 10.25 -191.45 -1.96 -16.65 16 16 C -0.13 -4.51 6.72 88.52 0.59 -3.91 16 17 C 0.56 17.13 3.52 71.24 0.25 17.38 16 18 F -0.16 -4.82 17.09 44.97 0.77 -4.06 16 19 F -0.16 -4.67 17.30 44.97 0.78 -3.90 16 20 F -0.17 -5.03 17.30 44.97 0.78 -4.25 16 21 S 0.20 7.32 23.18 -56.49 -1.31 6.01 16 22 H 0.05 1.50 6.39 -2.39 -0.02 1.48 16 23 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 26 H 0.06 1.97 7.83 -2.39 -0.02 1.95 16 27 H 0.26 12.97 8.31 -92.70 -0.77 12.20 16 28 H 0.09 4.24 5.30 -2.39 -0.01 4.23 16 29 H 0.08 2.79 7.86 -2.39 -0.02 2.77 16 30 H 0.20 5.46 8.03 -2.92 -0.02 5.44 16 Total: -1.00 -52.34 288.82 5.60 -46.74 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: 1.18 Total: 0.70 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.81 Total: 5.82 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -3.45 Total: -89.97 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 2.32 Total: -12.21 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -1.31 Total: 6.01 kcal Total: -52.34 5.60 -46.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447737896.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.617 kcal (2) G-P(sol) polarization free energy of solvation -52.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds