Wall clock time and date at job start Tue Mar 31 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48495 * 109.47214 * 269.99770 * 3 2 1 5 5 H 1.48506 * 109.46947 * 30.00039 * 3 2 1 6 6 H 1.48501 * 109.46891 * 149.99651 * 3 2 1 7 7 C 1.37880 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99673 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47384 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47373 * 180.02562 * 11 10 9 13 13 C 1.30718 * 120.00228 * 119.99931 * 12 11 10 14 14 N 1.35079 * 124.97977 * 179.97438 * 13 12 11 15 15 H 0.96995 * 122.18125 * 0.05714 * 14 13 12 16 16 C 1.38370 * 115.64488 * 180.02562 * 14 13 12 17 17 C 1.40242 * 127.97152 * 179.97438 * 16 14 13 18 18 C 1.37596 * 120.67341 * 180.02562 * 17 16 14 19 19 C 1.38415 * 120.29818 * 359.96671 * 18 17 16 20 20 C 1.38017 * 119.74964 * 0.03212 * 19 18 17 21 21 F 1.35094 * 119.84483 * 180.02562 * 20 19 18 22 22 C 1.38569 * 113.24550 * 0.02562 * 16 14 13 23 23 S 1.75568 * 124.98296 * 0.02562 * 13 12 11 24 24 H 0.96996 * 119.99182 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47301 * 60.00670 * 9 7 2 26 26 H 1.09000 * 109.47829 * 299.99963 * 9 7 2 27 27 H 1.08994 * 109.47135 * 59.99951 * 10 9 7 28 28 H 1.09000 * 109.46639 * 299.99956 * 10 9 7 29 29 H 1.09008 * 109.47300 * 59.99417 * 11 10 9 30 30 H 1.08999 * 109.47045 * 300.00155 * 11 10 9 31 31 H 1.07998 * 119.65909 * 0.03294 * 17 16 14 32 32 H 1.07994 * 119.85106 * 179.97438 * 18 17 16 33 33 H 1.07993 * 120.12565 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9871 0.0012 12 7 2.4320 -6.1007 0.0030 13 6 2.4250 -6.9649 0.9837 14 7 3.2544 -8.0262 1.0866 15 1 3.9302 -8.2204 0.4185 16 6 3.0777 -8.8178 2.2076 17 6 3.7879 -9.9716 2.5699 18 6 3.4836 -10.6483 3.7286 19 6 2.4691 -10.1970 4.5550 20 6 1.7605 -9.0631 4.2129 21 9 0.7704 -8.6205 5.0183 22 6 2.0623 -8.3712 3.0380 23 16 1.3355 -6.9173 2.3596 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8898 26 1 0.6239 -2.5567 0.8902 27 1 2.8711 -3.6041 0.8922 28 1 2.8724 -3.6048 -0.8877 29 1 0.8543 -5.0450 -0.8895 30 1 0.8525 -5.0447 0.8905 31 1 4.5819 -10.3324 1.9329 32 1 4.0388 -11.5356 3.9945 33 1 2.2329 -10.7301 5.4640 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450316491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:20 Heat of formation + Delta-G solvation = -0.633889 kcal Electronic energy + Delta-G solvation = -18057.894734 eV Core-core repulsion = 14930.970987 eV Total energy + Delta-G solvation = -3126.923747 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.20470 -40.56175 -37.57708 -35.52485 -33.34062 -31.36715 -30.99707 -29.59887 -26.76419 -24.70540 -23.51074 -22.64591 -21.31892 -20.19232 -18.95164 -17.60215 -17.07895 -16.48178 -16.14790 -16.09251 -15.90495 -15.32243 -15.01377 -14.48393 -14.14497 -14.08657 -13.56103 -12.79153 -12.58979 -12.32863 -12.24664 -11.89969 -11.62601 -11.27634 -10.90524 -10.85042 -10.56586 -10.34529 -10.04338 -9.75001 -9.44897 -9.14152 -9.08533 -8.51862 -8.33383 -7.44983 -5.98435 -4.00721 0.61682 0.67992 1.10051 1.56182 2.09379 2.46988 3.09463 3.33765 3.39607 3.43593 3.79505 4.32298 4.38908 4.47283 4.69486 4.77726 5.01354 5.31258 5.37305 5.42031 5.59231 5.60323 5.86674 5.90938 6.10599 6.16853 6.44514 6.64465 6.71907 6.92342 7.09450 7.67346 7.72387 7.81922 8.00930 8.43738 9.05720 9.63109 11.13005 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.003201 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.321076 B = 8745.073390 C = 9136.187254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.064 3.936 12 N -0.535 5.535 13 C 0.347 3.653 14 N -0.623 5.623 15 H 0.425 0.575 16 C 0.196 3.804 17 C -0.149 4.149 18 C -0.050 4.050 19 C -0.176 4.176 20 C 0.171 3.829 21 F -0.127 7.127 22 C -0.220 4.220 23 S 0.046 5.954 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -24.844 7.783 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.138 4.138 11 C -0.066 4.066 12 N -0.263 5.263 13 C -0.041 4.041 14 N -0.248 5.248 15 H 0.265 0.735 16 C 0.086 3.914 17 C -0.172 4.172 18 C -0.071 4.071 19 C -0.198 4.198 20 C 0.146 3.854 21 F -0.106 7.106 22 C -0.339 4.339 23 S 0.287 5.713 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.365 -23.426 7.275 25.109 hybrid contribution 1.042 0.203 0.022 1.062 sum 6.408 -23.223 7.297 25.171 Atomic orbital electron populations 1.69969 1.06043 1.26615 1.50855 1.25027 0.94869 0.99268 0.95314 0.86577 0.79848 0.83391 0.78099 1.20646 1.21196 1.19870 1.21212 0.93059 0.90914 1.50580 0.92651 1.19095 0.93931 0.91130 0.97386 1.21663 0.99292 0.91734 1.01151 1.22384 0.93074 0.89957 1.01142 1.71661 1.27556 1.06572 1.20481 1.23932 0.93174 0.91964 0.95043 1.41140 1.36390 1.24129 1.23155 0.73461 1.17568 0.94761 0.92726 0.86305 1.20456 1.02451 0.94577 0.99739 1.20673 0.95417 0.98756 0.92260 1.20925 0.99040 0.96923 1.02961 1.16768 0.87838 0.93656 0.87148 1.91544 1.58710 1.88874 1.71444 1.21979 1.05750 1.04795 1.01341 1.85922 1.40509 1.25242 1.19618 0.92984 0.96347 0.96495 0.93353 0.92290 0.89356 0.93774 0.84525 0.83850 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.22 5.48 -26.73 -0.15 -2.36 16 11 C 0.06 1.22 6.33 -4.05 -0.03 1.20 16 12 N -0.53 -9.32 10.64 -61.75 -0.66 -9.97 16 13 C 0.35 5.24 8.28 -90.16 -0.75 4.49 16 14 N -0.62 -7.18 5.63 -11.28 -0.06 -7.25 16 15 H 0.43 3.86 8.96 -40.82 -0.37 3.49 16 16 C 0.20 2.06 6.94 -84.04 -0.58 1.48 16 17 C -0.15 -1.06 10.06 -39.06 -0.39 -1.45 16 18 C -0.05 -0.30 10.01 -39.75 -0.40 -0.69 16 19 C -0.18 -1.33 10.03 -39.60 -0.40 -1.73 16 20 C 0.17 1.87 7.32 -39.14 -0.29 1.58 16 21 F -0.13 -1.55 17.26 2.25 0.04 -1.51 16 22 C -0.22 -2.73 6.39 -38.93 -0.25 -2.98 16 23 S 0.05 0.69 21.29 -107.50 -2.29 -1.60 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.04 0.83 6.15 -51.93 -0.32 0.52 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -32.73 305.41 -10.04 -42.77 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.61 Total: -3.56 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.77 Total: -13.91 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.02 Total: -43.86 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.29 Total: -1.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.73 -10.04 -42.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450316491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.132 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds