Wall clock time and date at job start Tue Mar 31 2020 01:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48495 * 109.47214 * 269.99770 * 3 2 1 5 5 H 1.48506 * 109.46947 * 30.00039 * 3 2 1 6 6 H 1.48501 * 109.46891 * 149.99651 * 3 2 1 7 7 C 1.37880 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99673 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47384 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47373 * 180.02562 * 11 10 9 13 13 C 1.30718 * 120.00228 * 119.99931 * 12 11 10 14 14 N 1.35079 * 124.97977 * 179.97438 * 13 12 11 15 15 H 0.96995 * 122.18125 * 0.05714 * 14 13 12 16 16 C 1.38370 * 115.64488 * 180.02562 * 14 13 12 17 17 C 1.40242 * 127.97152 * 179.97438 * 16 14 13 18 18 C 1.37596 * 120.67341 * 180.02562 * 17 16 14 19 19 C 1.38415 * 120.29818 * 359.96671 * 18 17 16 20 20 C 1.38017 * 119.74964 * 0.03212 * 19 18 17 21 21 F 1.35094 * 119.84483 * 180.02562 * 20 19 18 22 22 C 1.38569 * 113.24550 * 0.02562 * 16 14 13 23 23 S 1.75568 * 124.98296 * 0.02562 * 13 12 11 24 24 H 0.96996 * 119.99182 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47301 * 60.00670 * 9 7 2 26 26 H 1.09000 * 109.47829 * 299.99963 * 9 7 2 27 27 H 1.08994 * 109.47135 * 59.99951 * 10 9 7 28 28 H 1.09000 * 109.46639 * 299.99956 * 10 9 7 29 29 H 1.09008 * 109.47300 * 59.99417 * 11 10 9 30 30 H 1.08999 * 109.47045 * 300.00155 * 11 10 9 31 31 H 1.07998 * 119.65909 * 0.03294 * 17 16 14 32 32 H 1.07994 * 119.85106 * 179.97438 * 18 17 16 33 33 H 1.07993 * 120.12565 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9871 0.0012 12 7 2.4320 -6.1007 0.0030 13 6 2.4250 -6.9649 0.9837 14 7 3.2544 -8.0262 1.0866 15 1 3.9302 -8.2204 0.4185 16 6 3.0777 -8.8178 2.2076 17 6 3.7879 -9.9716 2.5699 18 6 3.4836 -10.6483 3.7286 19 6 2.4691 -10.1970 4.5550 20 6 1.7605 -9.0631 4.2129 21 9 0.7704 -8.6205 5.0183 22 6 2.0623 -8.3712 3.0380 23 16 1.3355 -6.9173 2.3596 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8898 26 1 0.6239 -2.5567 0.8902 27 1 2.8711 -3.6041 0.8922 28 1 2.8724 -3.6048 -0.8877 29 1 0.8543 -5.0450 -0.8895 30 1 0.8525 -5.0447 0.8905 31 1 4.5819 -10.3324 1.9329 32 1 4.0388 -11.5356 3.9945 33 1 2.2329 -10.7301 5.4640 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450316491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:19 Heat of formation + Delta-G solvation = -21.429374 kcal Electronic energy + Delta-G solvation = -18058.796494 eV Core-core repulsion = 14930.970987 eV Total energy + Delta-G solvation = -3127.825507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.05182 -41.41138 -38.56281 -36.93491 -35.23668 -33.13676 -31.72968 -30.58912 -28.51941 -25.93535 -24.82960 -23.70322 -22.43119 -21.98710 -19.89039 -18.56585 -18.49313 -18.02491 -17.15669 -16.96545 -16.86003 -16.54998 -16.26559 -16.03943 -15.62517 -15.16988 -14.48084 -14.34203 -14.10753 -13.60177 -13.33097 -13.16893 -12.89247 -12.74656 -12.68140 -12.47528 -12.21497 -11.76513 -11.56470 -11.38146 -11.24490 -10.81918 -10.58809 -10.48035 -9.32907 -8.58150 -8.22655 -6.34816 -0.09448 -0.08529 -0.01792 0.55783 0.95482 1.38019 1.40222 1.50066 1.51910 2.39160 2.43862 3.01524 3.09766 3.58471 3.64216 3.83564 3.98563 4.17238 4.27442 4.30822 4.50420 4.65850 4.76008 4.80499 4.98081 5.07742 5.11197 5.23901 5.32833 5.45008 5.64333 5.77375 5.78835 5.92444 6.19755 6.54718 6.80382 7.34234 8.89093 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.003201 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.321076 B = 8745.073390 C = 9136.187254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.083 4.083 11 C 0.076 3.924 12 N -0.567 5.567 13 C 0.364 3.636 14 N -0.611 5.611 15 H 0.438 0.562 16 C 0.176 3.824 17 C -0.131 4.131 18 C -0.033 4.033 19 C -0.159 4.159 20 C 0.141 3.859 21 F -0.143 7.143 22 C -0.240 4.240 23 S -0.009 6.009 24 H 0.265 0.735 25 H -0.002 1.002 26 H -0.007 1.007 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.174 0.826 32 H 0.193 0.807 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 -27.393 8.719 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.122 4.122 11 C -0.054 4.054 12 N -0.298 5.298 13 C -0.024 4.024 14 N -0.238 5.238 15 H 0.280 0.720 16 C 0.069 3.931 17 C -0.154 4.154 18 C -0.053 4.053 19 C -0.181 4.181 20 C 0.117 3.883 21 F -0.122 7.122 22 C -0.358 4.358 23 S 0.232 5.768 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.191 0.809 32 H 0.210 0.790 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.965 -26.045 8.242 28.456 hybrid contribution 0.276 0.715 -0.091 0.772 sum 8.241 -25.330 8.151 27.856 Atomic orbital electron populations 1.70101 1.07794 1.27925 1.51378 1.26012 0.95847 1.03447 0.94510 0.85398 0.78577 0.78139 0.78644 1.19506 1.20446 1.18867 1.21628 0.93467 0.92272 1.51033 0.92384 1.18965 0.94227 0.92678 0.95164 1.21361 0.98133 0.92083 1.00594 1.22022 0.92967 0.89498 1.00948 1.71622 1.28491 1.07541 1.22154 1.23997 0.92735 0.91885 0.93805 1.41108 1.35757 1.23071 1.23874 0.71962 1.17958 0.95363 0.94006 0.85761 1.21009 1.01837 0.92335 1.00204 1.21306 0.94100 0.99275 0.90620 1.21414 0.97893 0.94961 1.03811 1.17213 0.88815 0.95205 0.87098 1.91503 1.59587 1.89313 1.71790 1.22063 1.06907 1.03902 1.02916 1.86051 1.41702 1.28295 1.20796 0.92611 0.98336 0.98900 0.94013 0.92429 0.89626 0.94263 0.80861 0.79000 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.74 9.11 25.60 0.23 -32.50 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.08 -3.87 5.48 30.59 0.17 -3.71 16 11 C 0.08 3.08 6.33 86.38 0.55 3.62 16 12 N -0.57 -20.40 10.64 -349.28 -3.72 -24.12 16 13 C 0.36 11.21 8.28 180.19 1.49 12.70 16 14 N -0.61 -13.43 5.63 -189.59 -1.07 -14.50 16 15 H 0.44 7.17 8.96 -92.71 -0.83 6.34 16 16 C 0.18 3.35 6.94 38.68 0.27 3.62 16 17 C -0.13 -1.23 10.06 22.61 0.23 -1.00 16 18 C -0.03 -0.20 10.01 22.16 0.22 0.02 16 19 C -0.16 -1.77 10.03 22.26 0.22 -1.55 16 20 C 0.14 2.92 7.32 22.56 0.17 3.08 16 21 F -0.14 -3.52 17.26 44.97 0.78 -2.74 16 22 C -0.24 -5.84 6.39 22.69 0.15 -5.70 16 23 S -0.01 -0.28 21.29 -56.49 -1.20 -1.48 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 30 H 0.04 1.60 6.15 -2.39 -0.01 1.59 16 31 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.19 -0.54 8.06 -2.91 -0.02 -0.57 16 33 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -74.97 305.41 1.71 -73.25 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 0.31 Total: -0.73 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.30 Total: -19.28 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -4.50 Total: -96.73 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.20 Total: -1.48 kcal Total: -74.97 1.71 -73.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450316491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.824 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds