Wall clock time and date at job start Tue Mar 31 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.08998 * 109.47843 * 305.38361 * 3 2 1 5 5 C 1.50703 * 109.47045 * 185.38383 * 3 2 1 6 6 H 1.08005 * 119.99910 * 274.98525 * 5 3 2 7 7 C 1.37871 * 120.00193 * 94.98606 * 5 3 2 8 8 N 1.31518 * 120.00388 * 184.81722 * 7 5 3 9 9 Si 1.86800 * 120.00045 * 4.82420 * 7 5 3 10 10 H 1.48501 * 109.47333 * 84.85701 * 9 7 5 11 11 H 1.48500 * 109.47105 * 204.85941 * 9 7 5 12 12 H 1.48504 * 109.46858 * 324.85846 * 9 7 5 13 13 N 1.46505 * 109.47020 * 65.38715 * 3 2 1 14 14 C 1.30721 * 119.99464 * 239.99809 * 13 3 2 15 15 N 1.35082 * 124.98041 * 180.02562 * 14 13 3 16 16 H 0.97003 * 122.17856 * 359.97438 * 15 14 13 17 17 C 1.38371 * 115.64420 * 179.97438 * 15 14 13 18 18 C 1.40247 * 127.96389 * 179.97438 * 17 15 14 19 19 C 1.37594 * 120.66698 * 179.97438 * 18 17 15 20 20 C 1.38410 * 120.29950 * 359.97438 * 19 18 17 21 21 C 1.38014 * 119.75159 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.84282 * 180.02562 * 21 20 19 23 23 C 1.38563 * 113.24744 * 359.97438 * 17 15 14 24 24 S 1.75572 * 124.98605 * 359.69611 * 14 13 3 25 25 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 27 27 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 28 28 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 30 30 H 0.96994 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.07993 * 119.66603 * 359.97438 * 18 17 15 32 32 H 1.08002 * 119.85017 * 179.97438 * 19 18 17 33 33 H 1.08010 * 120.12438 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9835 -0.8378 5 6 3.5411 1.4445 -0.1333 6 1 4.1613 1.3349 0.7441 7 6 4.1227 1.5864 -1.3753 8 7 5.4282 1.4935 -1.5046 9 14 3.0565 1.9108 -2.8744 10 1 2.7904 3.3675 -2.9867 11 1 3.7612 1.4408 -4.0941 12 1 1.7703 1.1820 -2.7340 13 7 1.6604 2.0946 1.2558 14 6 0.9027 3.1596 1.2360 15 7 0.4934 3.8392 2.3294 16 1 0.7433 3.5715 3.2276 17 6 -0.3056 4.9421 2.0846 18 6 -0.8694 5.8234 3.0186 19 6 -1.6467 6.8809 2.6054 20 6 -1.8826 7.0894 1.2576 21 6 -1.3352 6.2312 0.3257 22 9 -1.5638 6.4333 -0.9904 23 6 -0.5460 5.1550 0.7367 24 16 0.2744 3.9214 -0.2157 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8373 1.5929 -2.3784 31 1 -0.6915 5.6705 4.0728 32 1 -2.0746 7.5513 3.3361 33 1 -2.4929 7.9207 0.9364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450437124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:15 Heat of formation + Delta-G solvation = 7.049465 kcal Electronic energy + Delta-G solvation = -19140.080582 eV Core-core repulsion = 16013.490010 eV Total energy + Delta-G solvation = -3126.590572 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.95530 -40.18881 -37.28056 -35.66039 -32.41519 -31.65620 -30.70574 -29.30158 -27.43735 -24.41253 -23.15395 -22.64663 -21.32187 -19.95533 -18.44659 -17.39501 -17.22187 -16.36885 -15.93545 -15.82323 -15.66007 -15.17362 -14.64337 -14.34920 -13.96750 -13.35449 -13.13910 -12.88203 -12.37641 -12.17633 -12.07293 -11.98634 -11.93013 -11.05401 -10.99471 -10.73654 -10.64885 -10.21163 -10.05755 -9.94788 -9.73722 -9.21198 -8.70903 -8.45398 -8.20053 -6.96773 -6.20451 -4.21817 0.90271 1.00926 1.55324 2.01612 2.67244 2.91075 3.23788 3.29992 3.33196 3.39296 4.08647 4.30762 4.60958 4.67011 5.01246 5.04950 5.14148 5.45199 5.60595 5.73062 5.84265 5.88031 5.95602 6.02713 6.12731 6.34644 6.48989 6.55561 6.75753 6.82369 6.91443 7.19917 7.33189 7.56063 8.14653 8.58024 8.89046 9.40248 10.91784 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.005928 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.387923 B = 4721.986076 C = 5140.046113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.191 3.809 4 H 0.022 0.978 5 C -0.507 4.507 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.855 3.145 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.260 1.260 13 N -0.492 5.492 14 C 0.330 3.670 15 N -0.626 5.626 16 H 0.423 0.577 17 C 0.202 3.798 18 C -0.154 4.154 19 C -0.053 4.053 20 C -0.183 4.183 21 C 0.167 3.833 22 F -0.131 7.131 23 C -0.218 4.218 24 S 0.020 5.980 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.268 0.732 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 9.522 7.148 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C 0.083 3.917 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.681 3.319 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.185 1.185 13 N -0.218 5.218 14 C -0.059 4.059 15 N -0.251 5.251 16 H 0.262 0.738 17 C 0.092 3.908 18 C -0.178 4.178 19 C -0.074 4.074 20 C -0.205 4.205 21 C 0.142 3.858 22 F -0.109 7.109 23 C -0.337 4.337 24 S 0.260 5.740 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.927 8.424 6.038 18.173 hybrid contribution -0.616 0.720 -0.045 0.949 sum -15.543 9.145 5.993 19.003 Atomic orbital electron populations 1.21903 0.98133 1.00364 1.00866 1.21753 0.92811 0.97969 1.02081 1.19912 0.97291 0.91101 0.83445 0.96055 1.20774 0.87649 1.50774 0.95319 0.89901 1.24940 0.94862 0.94142 0.98424 1.69860 1.09386 1.48739 1.24507 0.87147 0.81480 0.80192 0.83111 1.19047 1.20687 1.18452 1.71643 1.11201 1.06490 1.32483 1.23728 0.98415 0.95992 0.87754 1.41150 1.49385 1.25635 1.08929 0.73786 1.17595 0.92268 0.88443 0.92508 1.20409 1.02680 0.96271 0.98471 1.20597 0.95850 0.95999 0.94971 1.20831 1.05396 1.01543 0.92744 1.16777 0.96986 0.93960 0.78082 1.91519 1.92668 1.94338 1.32405 1.22011 1.10434 1.04482 0.96728 1.85875 1.54632 1.24950 1.08514 0.93595 0.93498 0.93617 0.91641 0.91722 0.92229 0.84790 0.84187 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.80 37.16 0.36 -2.51 16 2 C -0.11 -2.35 5.59 -26.73 -0.15 -2.50 16 3 C 0.19 4.68 1.94 -69.08 -0.13 4.55 16 4 H 0.02 0.54 3.31 -51.93 -0.17 0.37 16 5 C -0.51 -14.50 9.19 -34.44 -0.32 -14.82 16 6 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 9 Si 0.85 21.45 26.99 -169.99 -4.59 16.87 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.26 -6.22 6.82 56.52 0.39 -5.84 16 13 N -0.49 -11.08 9.70 -56.37 -0.55 -11.63 16 14 C 0.33 6.50 8.28 -90.15 -0.75 5.75 16 15 N -0.63 -9.65 5.64 -11.28 -0.06 -9.71 16 16 H 0.42 5.40 8.96 -40.82 -0.37 5.03 16 17 C 0.20 2.82 6.93 -84.04 -0.58 2.23 16 18 C -0.15 -1.54 10.06 -39.06 -0.39 -1.93 16 19 C -0.05 -0.45 10.01 -39.75 -0.40 -0.85 16 20 C -0.18 -1.86 10.02 -39.60 -0.40 -2.26 16 21 C 0.17 2.33 7.32 -39.14 -0.29 2.04 16 22 F -0.13 -1.95 17.26 2.25 0.04 -1.91 16 23 C -0.22 -3.47 6.39 -38.94 -0.25 -3.72 16 24 S 0.02 0.38 21.29 -107.50 -2.29 -1.91 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.85 7.76 -51.93 -0.40 0.45 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -31.83 300.03 -9.01 -40.84 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.47 Total: 0.95 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.39 Total: -11.79 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.16 Total: -47.57 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.87 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.29 Total: -1.91 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.83 -9.01 -40.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450437124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.891 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds