Wall clock time and date at job start Tue Mar 31 2020 02:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.08998 * 109.47843 * 305.38361 * 3 2 1 5 5 C 1.50703 * 109.47045 * 185.38383 * 3 2 1 6 6 H 1.08005 * 119.99910 * 274.98525 * 5 3 2 7 7 C 1.37871 * 120.00193 * 94.98606 * 5 3 2 8 8 N 1.31518 * 120.00388 * 184.81722 * 7 5 3 9 9 Si 1.86800 * 120.00045 * 4.82420 * 7 5 3 10 10 H 1.48501 * 109.47333 * 84.85701 * 9 7 5 11 11 H 1.48500 * 109.47105 * 204.85941 * 9 7 5 12 12 H 1.48504 * 109.46858 * 324.85846 * 9 7 5 13 13 N 1.46505 * 109.47020 * 65.38715 * 3 2 1 14 14 C 1.30721 * 119.99464 * 239.99809 * 13 3 2 15 15 N 1.35082 * 124.98041 * 180.02562 * 14 13 3 16 16 H 0.97003 * 122.17856 * 359.97438 * 15 14 13 17 17 C 1.38371 * 115.64420 * 179.97438 * 15 14 13 18 18 C 1.40247 * 127.96389 * 179.97438 * 17 15 14 19 19 C 1.37594 * 120.66698 * 179.97438 * 18 17 15 20 20 C 1.38410 * 120.29950 * 359.97438 * 19 18 17 21 21 C 1.38014 * 119.75159 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.84282 * 180.02562 * 21 20 19 23 23 C 1.38563 * 113.24744 * 359.97438 * 17 15 14 24 24 S 1.75572 * 124.98605 * 359.69611 * 14 13 3 25 25 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 27 27 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 28 28 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 30 30 H 0.96994 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.07993 * 119.66603 * 359.97438 * 18 17 15 32 32 H 1.08002 * 119.85017 * 179.97438 * 19 18 17 33 33 H 1.08010 * 120.12438 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9835 -0.8378 5 6 3.5411 1.4445 -0.1333 6 1 4.1613 1.3349 0.7441 7 6 4.1227 1.5864 -1.3753 8 7 5.4282 1.4935 -1.5046 9 14 3.0565 1.9108 -2.8744 10 1 2.7904 3.3675 -2.9867 11 1 3.7612 1.4408 -4.0941 12 1 1.7703 1.1820 -2.7340 13 7 1.6604 2.0946 1.2558 14 6 0.9027 3.1596 1.2360 15 7 0.4934 3.8392 2.3294 16 1 0.7433 3.5715 3.2276 17 6 -0.3056 4.9421 2.0846 18 6 -0.8694 5.8234 3.0186 19 6 -1.6467 6.8809 2.6054 20 6 -1.8826 7.0894 1.2576 21 6 -1.3352 6.2312 0.3257 22 9 -1.5638 6.4333 -0.9904 23 6 -0.5460 5.1550 0.7367 24 16 0.2744 3.9214 -0.2157 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8373 1.5929 -2.3784 31 1 -0.6915 5.6705 4.0728 32 1 -2.0746 7.5513 3.3361 33 1 -2.4929 7.9207 0.9364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450437124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:14 Heat of formation + Delta-G solvation = -14.159809 kcal Electronic energy + Delta-G solvation = -19141.000285 eV Core-core repulsion = 16013.490010 eV Total energy + Delta-G solvation = -3127.510275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.01919 -41.30301 -38.63183 -37.14337 -34.47729 -33.19491 -31.66916 -30.50128 -29.22336 -25.73434 -24.74194 -23.84713 -22.58325 -21.55877 -19.70101 -19.37098 -18.40510 -17.77413 -17.22436 -16.92190 -16.81787 -16.50913 -16.15156 -15.79940 -15.24898 -14.85515 -14.70583 -14.30352 -13.99268 -13.87281 -13.30583 -13.19622 -12.92827 -12.84921 -12.71814 -12.26279 -12.10780 -11.88907 -11.87080 -11.64948 -11.18906 -10.88347 -10.66201 -10.15882 -9.27944 -8.44181 -8.40400 -6.48174 -0.03608 0.01570 0.13415 0.69178 1.18208 1.23087 1.26300 1.33343 1.68013 2.20451 2.49028 2.92606 3.08270 3.70127 3.77263 3.91824 4.15230 4.29919 4.31128 4.34046 4.45058 4.61031 4.71149 4.87111 5.03565 5.09767 5.12600 5.20788 5.29391 5.38820 5.41690 5.59090 5.83442 5.97926 6.20079 6.56947 6.86725 7.19243 8.73790 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.005928 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.387923 B = 4721.986076 C = 5140.046113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.196 3.804 4 H 0.020 0.980 5 C -0.512 4.512 6 H 0.035 0.965 7 C 0.029 3.971 8 N -0.936 5.936 9 Si 0.911 3.089 10 H -0.264 1.264 11 H -0.271 1.271 12 H -0.242 1.242 13 N -0.537 5.537 14 C 0.351 3.649 15 N -0.617 5.617 16 H 0.434 0.566 17 C 0.180 3.820 18 C -0.136 4.136 19 C -0.032 4.032 20 C -0.162 4.162 21 C 0.140 3.860 22 F -0.144 7.144 23 C -0.238 4.238 24 S -0.042 6.042 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.271 0.729 31 H 0.172 0.828 32 H 0.194 0.806 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.457 12.056 8.738 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.086 3.914 4 H 0.037 0.963 5 C -0.551 4.551 6 H 0.053 0.947 7 C -0.171 4.171 8 N -0.575 5.575 9 Si 0.734 3.266 10 H -0.189 1.189 11 H -0.196 1.196 12 H -0.166 1.166 13 N -0.266 5.266 14 C -0.038 4.038 15 N -0.245 5.245 16 H 0.276 0.724 17 C 0.072 3.928 18 C -0.159 4.159 19 C -0.053 4.053 20 C -0.183 4.183 21 C 0.116 3.884 22 F -0.123 7.123 23 C -0.356 4.356 24 S 0.198 5.802 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.211 0.789 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -18.621 11.011 7.671 22.953 hybrid contribution 0.348 0.219 -0.318 0.520 sum -18.273 11.230 7.354 22.673 Atomic orbital electron populations 1.21762 0.95163 1.02206 1.00795 1.21660 0.95441 0.96279 1.01280 1.19677 0.94291 0.92718 0.84716 0.96256 1.20970 0.90196 1.50193 0.93743 0.94698 1.25694 0.95969 0.94020 1.01386 1.69992 1.11235 1.50798 1.25444 0.86241 0.80570 0.80201 0.79606 1.18934 1.19559 1.16587 1.71549 1.15029 1.08968 1.31034 1.23834 0.96463 0.94659 0.88865 1.41102 1.49317 1.25708 1.08354 0.72371 1.18018 0.93190 0.88931 0.92618 1.20983 1.00616 0.94745 0.99536 1.21282 0.93584 0.95280 0.95110 1.21371 1.03500 1.00668 0.92793 1.17226 0.98153 0.94661 0.78392 1.91486 1.92873 1.94432 1.33500 1.22058 1.12206 1.04777 0.96600 1.85911 1.56178 1.27766 1.10365 0.90706 0.93507 0.93689 0.92542 0.92433 0.91992 0.81069 0.78906 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.80 71.98 0.71 -4.44 16 2 C -0.11 -4.82 5.59 30.59 0.17 -4.65 16 3 C 0.20 9.92 1.94 44.24 0.09 10.00 16 4 H 0.02 1.01 3.31 -2.39 -0.01 1.00 16 5 C -0.51 -31.03 9.19 25.60 0.24 -30.79 16 6 H 0.03 2.37 8.06 -2.91 -0.02 2.35 16 7 C 0.03 1.73 5.47 84.65 0.46 2.20 16 8 N -0.94 -59.63 13.96 21.45 0.30 -59.34 16 9 Si 0.91 45.54 26.99 68.60 1.85 47.39 16 10 H -0.26 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.24 -11.32 6.82 99.48 0.68 -10.64 16 13 N -0.54 -25.00 9.70 -332.25 -3.22 -28.22 16 14 C 0.35 14.00 8.28 180.19 1.49 15.49 16 15 N -0.62 -18.38 5.64 -189.59 -1.07 -19.45 16 16 H 0.43 10.50 8.96 -92.71 -0.83 9.67 16 17 C 0.18 4.56 6.93 38.68 0.27 4.83 16 18 C -0.14 -1.97 10.06 22.61 0.23 -1.74 16 19 C -0.03 -0.33 10.01 22.16 0.22 -0.11 16 20 C -0.16 -2.44 10.02 22.26 0.22 -2.22 16 21 C 0.14 3.57 7.32 22.56 0.17 3.74 16 22 F -0.14 -4.15 17.26 44.97 0.78 -3.37 16 23 C -0.24 -7.29 6.39 22.69 0.15 -7.14 16 24 S -0.04 -1.66 21.29 -56.49 -1.20 -2.87 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 1.68 7.76 -2.39 -0.02 1.66 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 33 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -76.24 300.03 2.13 -74.11 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.29 Total: 6.58 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.40 Total: -14.83 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.99 Total: -107.01 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.85 Total: 47.39 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -1.20 Total: -2.87 kcal Total: -76.24 2.13 -74.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450437124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.951 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds