Wall clock time and date at job start Tue Mar 31 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09006 * 109.47396 * 55.00290 * 3 2 1 5 5 C 1.50697 * 109.47173 * 174.99519 * 3 2 1 6 6 H 1.08004 * 120.00054 * 119.99751 * 5 3 2 7 7 C 1.37873 * 120.00264 * 300.00380 * 5 3 2 8 8 N 1.31513 * 120.00163 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00071 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47560 * 90.00224 * 9 7 5 11 11 H 1.48505 * 109.47162 * 210.00281 * 9 7 5 12 12 H 1.48501 * 109.47114 * 329.99813 * 9 7 5 13 13 N 1.46494 * 109.47140 * 295.00115 * 3 2 1 14 14 C 1.30724 * 120.00468 * 120.00214 * 13 3 2 15 15 N 1.35072 * 124.98391 * 179.97438 * 14 13 3 16 16 H 0.96996 * 122.18188 * 359.97438 * 15 14 13 17 17 C 1.38376 * 115.64528 * 179.97438 * 15 14 13 18 18 C 1.40235 * 127.97209 * 179.97438 * 17 15 14 19 19 C 1.37597 * 120.67704 * 179.97438 * 18 17 15 20 20 C 1.38418 * 120.29477 * 359.97438 * 19 18 17 21 21 C 1.38009 * 119.74944 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.84589 * 180.02562 * 21 20 19 23 23 C 1.38571 * 113.24329 * 0.02562 * 17 15 14 24 24 S 1.75578 * 124.97891 * 359.69471 * 14 13 3 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 30 30 H 0.96998 * 120.00387 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.66383 * 359.97438 * 18 17 15 32 32 H 1.07998 * 119.85600 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.12395 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3374 2.1734 9 14 6.0050 0.8800 1.3813 10 1 6.4428 2.1128 2.0839 11 1 6.4390 -0.3112 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6525 2.0974 -1.2517 14 6 0.8950 3.1625 -1.2250 15 7 0.4788 3.8444 -2.3141 16 1 0.7236 3.5791 -3.2144 17 6 -0.3195 4.9462 -2.0620 18 6 -0.8885 5.8300 -2.9903 19 6 -1.6651 6.8852 -2.5700 20 6 -1.8960 7.0884 -1.2204 21 6 -1.3433 6.2277 -0.2940 22 9 -1.5677 6.4238 1.0237 23 6 -0.5521 5.1555 -0.7121 24 16 0.2635 3.9122 0.2317 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0611 2.9500 31 1 -0.7154 5.6808 -4.0458 32 1 -2.0965 7.5580 -3.2964 33 1 -2.5063 7.9173 -0.8937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450437125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:17 Heat of formation + Delta-G solvation = 6.221239 kcal Electronic energy + Delta-G solvation = -18981.491641 eV Core-core repulsion = 15854.865154 eV Total energy + Delta-G solvation = -3126.626486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.88494 -40.10867 -37.15335 -35.49368 -32.47934 -31.15292 -30.62997 -29.18505 -26.93643 -24.34573 -23.25620 -22.58302 -21.16141 -19.86045 -18.40330 -17.15164 -16.78424 -16.31260 -15.76344 -15.70612 -15.59865 -15.10469 -14.50514 -14.44052 -13.77409 -13.26555 -13.07463 -12.64264 -12.30564 -12.06003 -11.91599 -11.80819 -11.30493 -10.98077 -10.86860 -10.77910 -10.31736 -10.09035 -9.92090 -9.79145 -9.75375 -9.06563 -8.66765 -8.17930 -8.11810 -6.86778 -6.10797 -4.18571 0.96942 1.07905 1.68822 2.15121 2.78049 3.00871 3.26822 3.32906 3.37696 3.45911 4.15902 4.36038 4.66791 4.73971 5.08299 5.14650 5.18997 5.59238 5.70341 5.86000 5.93863 6.17549 6.20351 6.24415 6.42261 6.52167 6.83624 6.87706 6.96432 7.19138 7.33888 7.48304 7.71378 7.91478 8.20366 8.57357 8.89050 9.46436 10.93850 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.004832 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.357703 B = 5793.435692 C = 5902.807522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.223 3.777 4 H 0.022 0.978 5 C -0.507 4.507 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.501 5.501 14 C 0.325 3.675 15 N -0.628 5.628 16 H 0.421 0.579 17 C 0.200 3.800 18 C -0.156 4.156 19 C -0.055 4.055 20 C -0.184 4.184 21 C 0.167 3.833 22 F -0.131 7.131 23 C -0.223 4.223 24 S 0.040 5.960 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.789 11.064 -8.180 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.115 3.885 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.227 5.227 14 C -0.064 4.064 15 N -0.253 5.253 16 H 0.260 0.740 17 C 0.090 3.910 18 C -0.180 4.180 19 C -0.076 4.076 20 C -0.206 4.206 21 C 0.141 3.859 22 F -0.109 7.109 23 C -0.341 4.341 24 S 0.281 5.719 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.051 9.847 -7.031 15.730 hybrid contribution 0.712 0.464 -0.731 1.121 sum -9.339 10.311 -7.762 15.931 Atomic orbital electron populations 1.21849 0.99050 0.99603 1.00092 1.21616 0.91788 0.98194 1.03160 1.19468 0.96123 0.91136 0.81805 0.96116 1.20993 0.89679 1.38305 1.05621 0.91912 1.24922 0.98801 0.94876 0.95315 1.69865 1.35182 1.38135 1.09458 0.86411 0.84676 0.77651 0.78238 1.20503 1.20973 1.19781 1.71587 1.11463 1.05828 1.33827 1.23805 0.98849 0.95940 0.87817 1.41163 1.49455 1.25742 1.08925 0.74020 1.17587 0.92392 0.88469 0.92539 1.20391 1.02774 0.96366 0.98451 1.20574 0.96039 0.96107 0.94913 1.20818 1.05425 1.01572 0.92810 1.16768 0.97007 0.94107 0.78000 1.91517 1.92755 1.94430 1.32243 1.22169 1.10333 1.04622 0.96998 1.86025 1.54364 1.23787 1.07728 0.94605 0.94306 0.93654 0.87810 0.93772 0.92561 0.84957 0.84317 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.80 37.16 0.36 -2.76 16 2 C -0.11 -2.67 5.45 -26.73 -0.15 -2.82 16 3 C 0.22 5.78 2.28 -69.09 -0.16 5.62 16 4 H 0.02 0.59 6.15 -51.93 -0.32 0.27 16 5 C -0.51 -14.29 8.84 -34.44 -0.30 -14.59 16 6 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.50 -11.66 9.68 -56.37 -0.55 -12.20 16 14 C 0.32 6.55 8.28 -90.16 -0.75 5.80 16 15 N -0.63 -9.93 5.63 -11.28 -0.06 -10.00 16 16 H 0.42 5.57 8.96 -40.82 -0.37 5.20 16 17 C 0.20 2.87 6.93 -84.04 -0.58 2.28 16 18 C -0.16 -1.61 10.06 -39.07 -0.39 -2.01 16 19 C -0.05 -0.49 10.01 -39.75 -0.40 -0.89 16 20 C -0.18 -1.93 10.03 -39.60 -0.40 -2.33 16 21 C 0.17 2.36 7.32 -39.14 -0.29 2.08 16 22 F -0.13 -1.98 17.26 2.25 0.04 -1.94 16 23 C -0.22 -3.61 6.39 -38.93 -0.25 -3.86 16 24 S 0.04 0.78 21.29 -107.50 -2.29 -1.50 16 25 H 0.03 0.73 7.75 -51.93 -0.40 0.32 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 2.77 5.95 -51.93 -0.31 2.46 16 29 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.32 300.25 -9.60 -39.92 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.48 Total: 1.01 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.39 Total: -11.81 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.02 Total: -46.60 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.29 Total: -1.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.32 -9.60 -39.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450437125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.144 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds