Wall clock time and date at job start Tue Mar 31 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09006 * 109.47396 * 55.00290 * 3 2 1 5 5 C 1.50697 * 109.47173 * 174.99519 * 3 2 1 6 6 H 1.08004 * 120.00054 * 119.99751 * 5 3 2 7 7 C 1.37873 * 120.00264 * 300.00380 * 5 3 2 8 8 N 1.31513 * 120.00163 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00071 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47560 * 90.00224 * 9 7 5 11 11 H 1.48505 * 109.47162 * 210.00281 * 9 7 5 12 12 H 1.48501 * 109.47114 * 329.99813 * 9 7 5 13 13 N 1.46494 * 109.47140 * 295.00115 * 3 2 1 14 14 C 1.30724 * 120.00468 * 120.00214 * 13 3 2 15 15 N 1.35072 * 124.98391 * 179.97438 * 14 13 3 16 16 H 0.96996 * 122.18188 * 359.97438 * 15 14 13 17 17 C 1.38376 * 115.64528 * 179.97438 * 15 14 13 18 18 C 1.40235 * 127.97209 * 179.97438 * 17 15 14 19 19 C 1.37597 * 120.67704 * 179.97438 * 18 17 15 20 20 C 1.38418 * 120.29477 * 359.97438 * 19 18 17 21 21 C 1.38009 * 119.74944 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.84589 * 180.02562 * 21 20 19 23 23 C 1.38571 * 113.24329 * 0.02562 * 17 15 14 24 24 S 1.75578 * 124.97891 * 359.69471 * 14 13 3 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 30 30 H 0.96998 * 120.00387 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.66383 * 359.97438 * 18 17 15 32 32 H 1.07998 * 119.85600 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.12395 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3374 2.1734 9 14 6.0050 0.8800 1.3813 10 1 6.4428 2.1128 2.0839 11 1 6.4390 -0.3112 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6525 2.0974 -1.2517 14 6 0.8950 3.1625 -1.2250 15 7 0.4788 3.8444 -2.3141 16 1 0.7236 3.5791 -3.2144 17 6 -0.3195 4.9462 -2.0620 18 6 -0.8885 5.8300 -2.9903 19 6 -1.6651 6.8852 -2.5700 20 6 -1.8960 7.0884 -1.2204 21 6 -1.3433 6.2277 -0.2940 22 9 -1.5677 6.4238 1.0237 23 6 -0.5521 5.1555 -0.7121 24 16 0.2635 3.9122 0.2317 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0611 2.9500 31 1 -0.7154 5.6808 -4.0458 32 1 -2.0965 7.5580 -3.2964 33 1 -2.5063 7.9173 -0.8937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450437125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:17 Heat of formation + Delta-G solvation = -12.577460 kcal Electronic energy + Delta-G solvation = -18982.306814 eV Core-core repulsion = 15854.865154 eV Total energy + Delta-G solvation = -3127.441659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.98963 -41.26057 -38.52956 -37.08707 -34.35792 -32.87796 -31.63397 -30.40952 -28.79816 -25.77137 -24.87236 -23.79294 -22.50402 -21.56898 -19.69633 -18.65147 -18.34173 -17.76484 -17.12301 -16.87974 -16.79698 -16.50580 -16.04530 -15.81711 -15.16904 -14.84566 -14.47582 -14.23434 -13.88815 -13.25950 -13.19499 -13.17682 -12.84463 -12.79940 -12.73301 -12.19163 -12.13168 -11.85542 -11.72389 -11.49709 -11.10969 -10.75776 -10.53399 -10.01906 -9.24330 -8.42653 -8.14168 -6.35396 -0.00462 0.05136 0.22852 0.79384 1.24423 1.38046 1.38439 1.49973 1.73610 2.37802 2.51538 3.06073 3.12142 3.74275 3.84087 4.03979 4.26568 4.33648 4.45114 4.46766 4.62477 4.74152 4.88464 4.94612 5.11559 5.12745 5.28157 5.32428 5.41167 5.50725 5.63141 5.85344 5.87135 6.15709 6.18809 6.67108 6.97508 7.34670 8.84347 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.004832 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.357703 B = 5793.435692 C = 5902.807522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C 0.229 3.771 4 H -0.004 1.004 5 C -0.533 4.533 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.965 3.035 10 H -0.275 1.275 11 H -0.273 1.273 12 H -0.271 1.271 13 N -0.543 5.543 14 C 0.346 3.654 15 N -0.618 5.618 16 H 0.433 0.567 17 C 0.179 3.821 18 C -0.137 4.137 19 C -0.034 4.034 20 C -0.163 4.163 21 C 0.140 3.860 22 F -0.145 7.145 23 C -0.243 4.243 24 S -0.026 6.026 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.267 0.733 31 H 0.171 0.829 32 H 0.193 0.807 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 13.627 -10.669 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C 0.119 3.881 4 H 0.013 0.987 5 C -0.571 4.571 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.790 3.210 10 H -0.200 1.200 11 H -0.198 1.198 12 H -0.195 1.195 13 N -0.271 5.271 14 C -0.043 4.043 15 N -0.246 5.246 16 H 0.275 0.725 17 C 0.071 3.929 18 C -0.160 4.160 19 C -0.054 4.054 20 C -0.184 4.184 21 C 0.115 3.885 22 F -0.124 7.124 23 C -0.361 4.361 24 S 0.214 5.786 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.189 0.811 32 H 0.211 0.789 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.617 12.470 -9.557 19.539 hybrid contribution 0.961 -0.028 -0.063 0.963 sum -10.656 12.442 -9.619 18.997 Atomic orbital electron populations 1.21672 0.96466 1.01052 0.99842 1.21458 0.94094 0.97489 1.01283 1.19169 0.94792 0.91633 0.82470 0.98670 1.21257 0.91386 1.38797 1.05668 0.93504 1.25699 1.03213 0.94333 0.94840 1.69981 1.36834 1.38404 1.09756 0.85453 0.79353 0.77989 0.78247 1.20040 1.19838 1.19548 1.71516 1.15269 1.08327 1.32038 1.23871 0.96822 0.94742 0.88909 1.41096 1.49381 1.25811 1.08297 0.72544 1.18018 0.93327 0.88959 0.92607 1.20969 1.00672 0.94789 0.99557 1.21265 0.93738 0.95385 0.95013 1.21361 1.03512 1.00674 0.92883 1.17229 0.98158 0.94831 0.78296 1.91483 1.92959 1.94526 1.33384 1.22195 1.12161 1.04853 0.96920 1.86157 1.55993 1.26740 1.09734 0.94232 0.91862 0.94399 0.90384 0.94627 0.92346 0.81140 0.78949 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 9.80 71.98 0.71 -5.04 16 2 C -0.10 -5.38 5.45 30.60 0.17 -5.22 16 3 C 0.23 12.53 2.28 44.24 0.10 12.64 16 4 H 0.00 -0.24 6.15 -2.38 -0.01 -0.25 16 5 C -0.53 -31.51 8.84 25.60 0.23 -31.28 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -53.37 11.29 21.45 0.24 -53.13 16 9 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 N -0.54 -26.43 9.68 -332.27 -3.22 -29.64 16 14 C 0.35 14.42 8.28 180.19 1.49 15.91 16 15 N -0.62 -19.20 5.63 -189.59 -1.07 -20.27 16 16 H 0.43 10.94 8.96 -92.71 -0.83 10.11 16 17 C 0.18 4.74 6.93 38.67 0.27 5.01 16 18 C -0.14 -2.11 10.06 22.60 0.23 -1.89 16 19 C -0.03 -0.37 10.01 22.16 0.22 -0.15 16 20 C -0.16 -2.62 10.03 22.26 0.22 -2.40 16 21 C 0.14 3.73 7.32 22.56 0.17 3.89 16 22 F -0.14 -4.35 17.26 44.97 0.78 -3.58 16 23 C -0.24 -7.77 6.39 22.69 0.15 -7.63 16 24 S -0.03 -1.10 21.29 -56.49 -1.20 -2.30 16 25 H 0.04 1.64 7.75 -2.39 -0.02 1.63 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 29 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -72.07 300.25 2.27 -69.80 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.32 Total: 6.65 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.39 Total: -14.61 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -4.04 Total: -103.04 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -1.20 Total: -2.30 kcal Total: -72.07 2.27 -69.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450437125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.224 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds