Wall clock time and date at job start Tue Mar 31 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37962 * 120.08022 * 2 1 4 4 C 1.38342 * 120.15311 * 180.02562 * 3 2 1 5 5 C 1.38377 * 120.30348 * 0.02562 * 4 3 2 6 6 C 1.37924 * 120.15791 * 0.04233 * 5 4 3 7 7 S 1.76197 * 120.08171 * 180.02562 * 6 5 4 8 8 O 1.42104 * 106.39968 * 228.47359 * 7 6 5 9 9 O 1.42099 * 106.40239 * 1.39619 * 7 6 5 10 10 N 1.65603 * 107.21759 * 114.93558 * 7 6 5 11 11 C 1.46502 * 120.00023 * 65.00161 * 10 7 6 12 12 C 1.50694 * 109.47035 * 165.00236 * 11 10 7 13 13 H 1.07996 * 120.00401 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99953 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00049 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00137 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46805 * 90.00133 * 16 14 12 18 18 H 1.48498 * 109.47479 * 209.99956 * 16 14 12 19 19 H 1.48498 * 109.47110 * 330.00684 * 16 14 12 20 20 C 1.39615 * 120.07259 * 180.02562 * 2 1 3 21 21 C 1.43198 * 120.15115 * 359.70008 * 20 2 1 22 22 N 3.48503 * 80.49366 * 179.83155 * 2 1 3 23 23 H 1.08999 * 109.47017 * 269.97632 * 1 2 3 24 24 H 1.09001 * 109.47006 * 29.97905 * 1 2 3 25 25 H 1.08999 * 109.47224 * 149.97877 * 1 2 3 26 26 H 1.08004 * 119.92153 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.84596 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.92466 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99911 * 245.00028 * 10 7 6 30 30 H 1.09006 * 109.47100 * 284.99974 * 11 10 7 31 31 H 1.09002 * 109.47279 * 44.99435 * 11 10 7 32 32 H 0.96996 * 119.99515 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1938 0.0000 4 6 3.5819 1.1956 -0.0005 5 6 4.2817 0.0018 -0.0016 6 6 3.6032 -1.1991 -0.0030 7 16 4.4962 -2.7180 -0.0037 8 8 3.9211 -3.5210 -1.0253 9 8 5.8743 -2.3732 0.0307 10 7 4.1688 -3.4797 1.4298 11 6 2.8082 -3.9373 1.7222 12 6 2.8401 -4.9002 2.8809 13 1 3.7799 -5.1471 3.3522 14 6 1.6694 -5.4661 3.3394 15 7 0.5247 -5.1651 2.7659 16 14 1.7090 -6.6603 4.7753 17 1 1.5531 -5.9101 6.0474 18 1 0.5991 -7.6371 4.6376 19 1 3.0064 -7.3828 4.7826 20 6 2.2066 -1.2082 -0.0005 21 6 1.4955 -2.4511 0.0054 22 7 0.9314 -3.4372 0.0101 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6585 2.1292 0.0004 27 1 4.1182 2.1330 -0.0001 28 1 5.3617 0.0103 -0.0016 29 1 4.8780 -3.6230 2.0759 30 1 2.1841 -3.0810 1.9784 31 1 2.3967 -4.4373 0.8453 32 1 -0.2988 -5.5630 3.0888 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487374926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:28 Heat of formation + Delta-G solvation = -4.144963 kcal Electronic energy + Delta-G solvation = -19827.975504 eV Core-core repulsion = 16688.526715 eV Total energy + Delta-G solvation = -3139.448788 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.67095 -37.03767 -36.08249 -35.40903 -34.39655 -33.01646 -32.15514 -31.47879 -27.30541 -26.73484 -24.04468 -22.62657 -22.25302 -19.02195 -18.70750 -17.62696 -16.83428 -16.00320 -15.92972 -15.35832 -15.05798 -14.59335 -14.19368 -13.87196 -13.62355 -13.07662 -12.87684 -12.78743 -12.41328 -12.29926 -12.14299 -11.99343 -11.84398 -11.67773 -11.60498 -11.51662 -11.22134 -10.93709 -10.72711 -10.56827 -10.07909 -9.40456 -9.23178 -8.90488 -8.77348 -8.23255 -6.11342 -4.18644 0.52472 0.88166 1.02138 3.08616 3.16512 3.26243 3.32665 3.35716 3.57733 3.94155 4.08240 4.17638 4.35734 4.52704 4.68048 4.93312 5.11772 5.15700 5.22874 5.35936 5.58246 5.60568 5.65399 5.95212 6.03240 6.12581 6.22887 6.39425 6.65140 7.19058 7.33094 7.76436 7.80771 8.02716 8.17690 8.82909 9.45213 10.96031 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006949 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.691590 B = 4028.482319 C = 4841.822291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.073 4.073 4 C -0.121 4.121 5 C -0.029 4.029 6 C -0.636 4.636 7 S 2.682 3.318 8 O -0.952 6.952 9 O -0.974 6.974 10 N -1.100 6.100 11 C 0.232 3.768 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.064 3.936 15 N -0.872 5.872 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.097 3.903 21 C 0.165 3.835 22 N -0.291 5.291 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.149 0.851 29 H 0.412 0.588 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 15.039 -4.540 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.068 4.068 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.048 4.048 6 C -0.722 4.722 7 S 2.769 3.231 8 O -0.942 6.942 9 O -0.964 6.964 10 N -0.863 5.863 11 C 0.109 3.891 12 C -0.576 4.576 13 H 0.083 0.917 14 C -0.141 4.141 15 N -0.509 5.509 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.093 3.907 21 C -0.150 4.150 22 N 0.034 4.966 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.167 0.833 29 H 0.247 0.753 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.148 13.211 -5.349 14.414 hybrid contribution -0.009 0.291 1.519 1.546 sum 2.139 13.503 -3.831 14.198 Atomic orbital electron populations 1.20907 0.89891 1.03483 1.03554 1.20060 0.96736 0.91536 0.98447 1.21214 0.94377 0.97316 0.96208 1.21410 0.94303 0.98367 0.99948 1.20898 1.00746 0.90447 0.92752 1.31379 1.04455 1.21918 1.14483 1.02196 0.73004 0.73663 0.74276 1.93615 1.79015 1.65634 1.55906 1.93525 1.31058 1.84693 1.87151 1.55503 1.20769 1.72451 1.37620 1.19957 0.75474 0.94838 0.98823 1.21134 0.93952 1.26786 1.15719 0.91698 1.24979 0.95308 0.96677 0.97107 1.69998 0.97942 1.42803 1.40111 0.86457 0.77880 0.80705 0.82111 1.20610 1.21046 1.19759 1.15340 0.89863 0.87708 0.97771 1.25339 0.97845 0.93774 0.98074 1.81416 1.05146 1.07317 1.02727 0.89985 0.90678 0.90893 0.84547 0.84588 0.83292 0.75286 0.96243 0.92763 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.61 36.01 0.35 -1.04 16 2 C -0.06 -0.85 5.91 -104.21 -0.62 -1.47 16 3 C -0.07 -0.74 9.69 -39.64 -0.38 -1.12 16 4 C -0.12 -1.21 10.04 -39.49 -0.40 -1.61 16 5 C -0.03 -0.38 9.54 -39.65 -0.38 -0.75 16 6 C -0.64 -10.46 5.92 -39.17 -0.23 -10.69 16 7 S 2.68 51.54 5.44 -107.50 -0.58 50.96 16 8 O -0.95 -21.40 16.25 -57.17 -0.93 -22.33 16 9 O -0.97 -18.47 16.97 -57.17 -0.97 -19.44 16 10 N -1.10 -23.16 5.99 -11.65 -0.07 -23.23 16 11 C 0.23 5.92 3.73 -5.20 -0.02 5.90 16 12 C -0.54 -14.76 9.27 -34.44 -0.32 -15.08 16 13 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.87 -25.14 13.29 55.43 0.74 -24.40 16 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.10 1.67 5.66 -106.93 -0.61 1.06 16 21 C 0.17 3.45 8.26 -22.47 -0.19 3.26 16 22 N -0.29 -6.96 15.62 41.84 0.65 -6.30 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.07 0.94 7.09 -51.93 -0.37 0.57 16 26 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 27 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.15 1.66 7.33 -52.48 -0.38 1.28 16 29 H 0.41 7.79 8.54 -34.47 -0.29 7.50 16 30 H 0.02 0.52 6.20 -51.93 -0.32 0.20 16 31 H 0.05 1.53 5.27 -51.93 -0.27 1.25 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -34.15 290.23 -7.57 -41.72 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.87 Total: 2.31 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.89 Total: -19.85 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 1.32 Total: -53.93 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.90 Total: -41.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.58 Total: 50.96 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.15 -7.57 -41.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487374926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.576 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds