Wall clock time and date at job start Tue Mar 31 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37962 * 120.08022 * 2 1 4 4 C 1.38342 * 120.15311 * 180.02562 * 3 2 1 5 5 C 1.38377 * 120.30348 * 0.02562 * 4 3 2 6 6 C 1.37924 * 120.15791 * 0.04233 * 5 4 3 7 7 S 1.76197 * 120.08171 * 180.02562 * 6 5 4 8 8 O 1.42104 * 106.39968 * 228.47359 * 7 6 5 9 9 O 1.42099 * 106.40239 * 1.39619 * 7 6 5 10 10 N 1.65603 * 107.21759 * 114.93558 * 7 6 5 11 11 C 1.46502 * 120.00023 * 65.00161 * 10 7 6 12 12 C 1.50694 * 109.47035 * 165.00236 * 11 10 7 13 13 H 1.07996 * 120.00401 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99953 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00049 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00137 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46805 * 90.00133 * 16 14 12 18 18 H 1.48498 * 109.47479 * 209.99956 * 16 14 12 19 19 H 1.48498 * 109.47110 * 330.00684 * 16 14 12 20 20 C 1.39615 * 120.07259 * 180.02562 * 2 1 3 21 21 C 1.43198 * 120.15115 * 359.70008 * 20 2 1 22 22 N 3.48503 * 80.49366 * 179.83155 * 2 1 3 23 23 H 1.08999 * 109.47017 * 269.97632 * 1 2 3 24 24 H 1.09001 * 109.47006 * 29.97905 * 1 2 3 25 25 H 1.08999 * 109.47224 * 149.97877 * 1 2 3 26 26 H 1.08004 * 119.92153 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.84596 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.92466 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99911 * 245.00028 * 10 7 6 30 30 H 1.09006 * 109.47100 * 284.99974 * 11 10 7 31 31 H 1.09002 * 109.47279 * 44.99435 * 11 10 7 32 32 H 0.96996 * 119.99515 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1938 0.0000 4 6 3.5819 1.1956 -0.0005 5 6 4.2817 0.0018 -0.0016 6 6 3.6032 -1.1991 -0.0030 7 16 4.4962 -2.7180 -0.0037 8 8 3.9211 -3.5210 -1.0253 9 8 5.8743 -2.3732 0.0307 10 7 4.1688 -3.4797 1.4298 11 6 2.8082 -3.9373 1.7222 12 6 2.8401 -4.9002 2.8809 13 1 3.7799 -5.1471 3.3522 14 6 1.6694 -5.4661 3.3394 15 7 0.5247 -5.1651 2.7659 16 14 1.7090 -6.6603 4.7753 17 1 1.5531 -5.9101 6.0474 18 1 0.5991 -7.6371 4.6376 19 1 3.0064 -7.3828 4.7826 20 6 2.2066 -1.2082 -0.0005 21 6 1.4955 -2.4511 0.0054 22 7 0.9314 -3.4372 0.0101 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6585 2.1292 0.0004 27 1 4.1182 2.1330 -0.0001 28 1 5.3617 0.0103 -0.0016 29 1 4.8780 -3.6230 2.0759 30 1 2.1841 -3.0810 1.9784 31 1 2.3967 -4.4373 0.8453 32 1 -0.2988 -5.5630 3.0888 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487374926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:28 Heat of formation + Delta-G solvation = -30.753837 kcal Electronic energy + Delta-G solvation = -19829.129351 eV Core-core repulsion = 16688.526715 eV Total energy + Delta-G solvation = -3140.602636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74727 -38.61347 -37.69388 -37.03017 -36.22708 -34.17367 -34.02256 -32.57525 -28.77430 -28.27091 -25.15764 -24.59612 -23.39047 -20.49072 -20.03014 -19.31823 -18.20951 -17.74382 -17.41494 -16.89494 -16.41054 -16.03208 -15.52651 -15.27652 -14.93770 -14.74399 -14.55577 -14.01720 -13.91623 -13.64762 -13.47023 -13.33725 -13.26453 -13.21063 -13.16779 -13.06312 -12.79341 -12.58648 -12.34001 -12.07039 -11.82042 -11.26467 -10.88529 -10.36380 -10.17242 -9.84427 -8.21679 -6.37810 -0.72057 -0.49819 0.01230 1.38640 1.40748 1.51439 1.63269 1.96242 2.01263 2.37977 2.49213 2.74623 2.82648 3.09078 3.26987 3.73288 3.90133 4.19211 4.24279 4.37840 4.53092 4.59033 4.71157 4.78766 4.98939 5.15825 5.17290 5.22809 5.27860 5.30048 5.69403 5.77251 5.93556 6.23893 6.51029 6.73265 7.30458 8.85104 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.006949 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.691590 B = 4028.482319 C = 4841.822291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.062 4.062 3 C -0.053 4.053 4 C -0.096 4.096 5 C -0.032 4.032 6 C -0.646 4.646 7 S 2.690 3.310 8 O -0.996 6.996 9 O -0.973 6.973 10 N -1.106 6.106 11 C 0.248 3.752 12 C -0.562 4.562 13 H 0.072 0.928 14 C 0.011 3.989 15 N -0.902 5.902 16 Si 0.972 3.028 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.048 3.952 21 C 0.189 3.811 22 N -0.369 5.369 23 H 0.082 0.918 24 H 0.118 0.882 25 H 0.045 0.955 26 H 0.190 0.810 27 H 0.190 0.810 28 H 0.167 0.833 29 H 0.419 0.581 30 H 0.009 0.991 31 H 0.027 0.973 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 18.843 -3.802 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.070 4.070 4 C -0.115 4.115 5 C -0.052 4.052 6 C -0.738 4.738 7 S 2.783 3.217 8 O -0.986 6.986 9 O -0.964 6.964 10 N -0.868 5.868 11 C 0.123 3.877 12 C -0.601 4.601 13 H 0.090 0.910 14 C -0.191 4.191 15 N -0.539 5.539 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.044 3.956 21 C -0.126 4.126 22 N -0.044 5.044 23 H 0.100 0.900 24 H 0.136 0.864 25 H 0.064 0.936 26 H 0.207 0.793 27 H 0.207 0.793 28 H 0.184 0.816 29 H 0.255 0.745 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.062 16.964 -4.605 17.842 hybrid contribution -0.229 -0.626 1.211 1.383 sum 2.832 16.338 -3.393 16.925 Atomic orbital electron populations 1.21002 0.88975 1.04290 1.03792 1.20417 0.97626 0.91221 0.97258 1.21848 0.94720 0.97690 0.92780 1.22042 0.94443 0.98987 0.96016 1.21317 1.01827 0.90131 0.91893 1.30708 1.03942 1.21135 1.18019 1.01532 0.73010 0.74240 0.72943 1.93561 1.79713 1.68120 1.57170 1.93513 1.31145 1.84863 1.86861 1.55359 1.19359 1.73825 1.38238 1.19463 0.77139 0.93945 0.97120 1.21582 0.94479 1.27546 1.16515 0.91023 1.25912 0.94901 0.98427 0.99883 1.70165 0.98480 1.43794 1.41490 0.85360 0.77922 0.78301 0.78838 1.19320 1.20994 1.19047 1.15632 0.90270 0.87450 1.02268 1.26149 0.96521 0.94017 0.95870 1.81393 1.07699 1.09396 1.05946 0.89978 0.86382 0.93589 0.79295 0.79296 0.81568 0.74503 0.97316 0.95581 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.61 71.24 0.68 -1.91 16 2 C -0.06 -1.47 5.91 -19.60 -0.12 -1.59 16 3 C -0.05 -0.75 9.69 22.23 0.22 -0.53 16 4 C -0.10 -1.31 10.04 22.33 0.22 -1.09 16 5 C -0.03 -0.71 9.54 22.23 0.21 -0.50 16 6 C -0.65 -20.85 5.92 22.54 0.13 -20.72 16 7 S 2.69 106.57 5.44 -56.49 -0.31 106.27 16 8 O -1.00 -47.56 16.25 -128.00 -2.08 -49.64 16 9 O -0.97 -36.77 16.97 -128.00 -2.17 -38.95 16 10 N -1.11 -48.58 5.99 -190.78 -1.14 -49.72 16 11 C 0.25 13.34 3.73 85.63 0.32 13.66 16 12 C -0.56 -31.97 9.27 25.60 0.24 -31.73 16 13 H 0.07 3.84 7.65 -2.91 -0.02 3.82 16 14 C 0.01 0.60 5.46 84.65 0.46 1.06 16 15 N -0.90 -54.16 13.29 21.45 0.28 -53.87 16 16 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.05 1.65 5.66 -21.36 -0.12 1.53 16 21 C 0.19 8.42 8.26 88.33 0.73 9.15 16 22 N -0.37 -19.12 15.62 19.00 0.30 -18.82 16 23 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.12 1.40 8.09 -2.39 -0.02 1.38 16 25 H 0.05 1.21 7.09 -2.39 -0.02 1.19 16 26 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 27 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 28 H 0.17 3.07 7.33 -2.91 -0.02 3.05 16 29 H 0.42 16.43 8.54 -96.74 -0.83 15.60 16 30 H 0.01 0.51 6.20 -2.38 -0.01 0.49 16 31 H 0.03 1.60 5.27 -2.39 -0.01 1.58 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -80.79 290.23 0.24 -80.55 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.35 Total: 10.56 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 2.98 Total: -32.67 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -0.56 Total: -122.42 kcal Atomic # 8 Polarization: -84.33 SS G_CDS: -4.25 Total: -88.58 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 106.57 SS G_CDS: -0.31 Total: 106.27 kcal Total: -80.79 0.24 -80.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487374926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.801 kcal (2) G-P(sol) polarization free energy of solvation -80.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds