Wall clock time and date at job start Tue Mar 31 2020 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47238 * 340.18917 * 3 2 1 5 5 C 1.36938 * 119.99882 * 274.99842 * 4 3 2 6 6 H 1.08005 * 119.99894 * 142.18456 * 5 4 3 7 7 C 1.38804 * 120.00203 * 322.18279 * 5 4 3 8 8 N 1.31626 * 120.00167 * 157.70517 * 7 5 4 9 9 Si 1.86803 * 120.00005 * 337.71085 * 7 5 4 10 10 H 1.48497 * 109.47029 * 95.31770 * 9 7 5 11 11 H 1.48508 * 109.46939 * 215.31549 * 9 7 5 12 12 H 1.48501 * 109.47150 * 335.31336 * 9 7 5 13 13 S 1.65597 * 119.99913 * 95.00174 * 4 3 2 14 14 O 1.42105 * 106.40442 * 341.21321 * 13 4 3 15 15 O 1.42098 * 106.40102 * 208.29643 * 13 4 3 16 16 C 1.76193 * 107.22207 * 94.75587 * 13 4 3 17 17 C 1.38677 * 120.42007 * 85.10189 * 16 13 4 18 18 C 1.38624 * 118.42426 * 179.75313 * 17 16 13 19 19 C 1.38230 * 119.15730 * 0.25288 * 18 17 16 20 20 C 1.50701 * 119.61624 * 180.02562 * 19 18 17 21 21 N 1.31850 * 120.76676 * 0.02562 * 19 18 17 22 22 C 1.31882 * 121.72631 * 359.97438 * 21 19 18 23 23 H 4.40638 * 5.51511 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47130 * 220.18568 * 3 2 1 25 25 H 1.09003 * 109.47133 * 100.19333 * 3 2 1 26 26 H 0.96995 * 119.99928 * 179.97438 * 8 7 5 27 27 H 1.07998 * 120.78823 * 0.02611 * 17 16 13 28 28 H 1.07995 * 120.42202 * 180.23079 * 18 17 16 29 29 H 1.09002 * 109.47156 * 89.99741 * 20 19 18 30 30 H 1.08999 * 109.46845 * 209.99504 * 20 19 18 31 31 H 1.08999 * 109.47138 * 329.99323 * 20 19 18 32 32 H 1.08006 * 119.62093 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2986 0.4681 5 6 3.2658 -1.5378 1.8101 6 1 3.0229 -2.5107 2.2114 7 6 3.7108 -0.5301 2.6546 8 7 3.4347 -0.5793 3.9406 9 14 4.7014 0.8961 1.9660 10 1 3.7937 2.0351 1.6765 11 1 5.7212 1.3162 2.9604 12 1 5.3768 0.4707 0.7137 13 16 3.5293 -2.4778 -0.6256 14 8 2.8928 -2.1229 -1.8455 15 8 3.3156 -3.7204 0.0297 16 6 5.2631 -2.3605 -0.9166 17 6 6.1613 -2.9972 -0.0734 18 6 7.5160 -2.8817 -0.3439 19 6 7.9238 -2.1367 -1.4345 20 6 9.3939 -2.0047 -1.7386 21 7 7.0415 -1.5401 -2.2118 22 6 5.7454 -1.6282 -1.9846 23 1 -1.0498 -0.0004 0.0003 24 1 3.0090 0.7859 0.6631 25 1 3.0092 0.1827 -1.0115 26 1 3.7459 0.1247 4.5307 27 1 5.8135 -3.5730 0.7715 28 1 8.2435 -3.3674 0.2895 29 1 9.7015 -2.8124 -2.4028 30 1 9.5802 -1.0458 -2.2220 31 1 9.9633 -2.0606 -0.8108 32 1 5.0526 -1.1260 -2.6437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490950791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:53 Heat of formation + Delta-G solvation = 31.417810 kcal Electronic energy + Delta-G solvation = -19904.711955 eV Core-core repulsion = 16766.805284 eV Total energy + Delta-G solvation = -3137.906671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84428 -36.55677 -36.12787 -34.71686 -32.89549 -32.78896 -32.06594 -31.59651 -27.66207 -26.88013 -24.18227 -23.40710 -22.13521 -18.71336 -18.50808 -17.61736 -16.67778 -16.51585 -16.32570 -15.70255 -15.48363 -14.37513 -14.30413 -13.95108 -13.67426 -13.30335 -13.09711 -12.91943 -12.74760 -12.42096 -12.28650 -12.06442 -11.39890 -11.21571 -11.01563 -10.92864 -10.80821 -10.47899 -10.42544 -9.86963 -9.68133 -9.60076 -9.21963 -9.18288 -8.93081 -8.45138 -6.84598 -4.32833 0.96483 1.41620 1.53041 2.84554 3.01279 3.04864 3.31825 3.48691 3.81357 3.83402 4.19382 4.42609 4.55258 4.74586 4.85268 5.02499 5.04825 5.22910 5.45408 5.51462 5.55853 5.65880 5.70549 5.87327 5.94155 6.00410 6.26258 6.33540 6.45956 6.72880 6.89530 7.24597 8.04878 8.08658 8.23725 8.67236 8.72299 10.21446 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.008509 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.959465 B = 3289.653782 C = 3947.202925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C 0.222 3.778 4 N -0.826 5.826 5 C -0.260 4.260 6 H 0.126 0.874 7 C 0.070 3.930 8 N -0.817 5.817 9 Si 0.867 3.133 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.255 1.255 13 S 2.558 3.442 14 O -0.994 6.994 15 O -0.965 6.965 16 C -0.718 4.718 17 C 0.028 3.972 18 C -0.198 4.198 19 C 0.150 3.850 20 C -0.105 4.105 21 N -0.505 5.505 22 C 0.184 3.816 23 H 0.214 0.786 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.284 0.716 27 H 0.150 0.850 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 1.506 -5.305 8.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.169 4.169 3 C 0.097 3.903 4 N -0.650 5.650 5 C -0.407 4.407 6 H 0.143 0.857 7 C -0.146 4.146 8 N -0.452 5.452 9 Si 0.693 3.307 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.179 1.179 13 S 2.659 3.341 14 O -0.984 6.984 15 O -0.955 6.955 16 C -0.798 4.798 17 C 0.002 3.998 18 C -0.219 4.219 19 C 0.013 3.987 20 C -0.162 4.162 21 N -0.215 5.215 22 C 0.026 3.974 23 H 0.231 0.769 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.379 1.326 -6.508 9.210 hybrid contribution 0.834 0.514 0.702 1.205 sum 7.213 1.840 -5.807 9.441 Atomic orbital electron populations 1.24681 0.95640 1.00237 1.02486 1.23356 0.94555 1.00143 0.98852 1.18268 0.84670 0.87481 0.99871 1.53763 1.67334 1.27513 1.16413 1.19342 1.40017 1.02850 0.78473 0.85673 1.25764 0.95086 0.98735 0.95006 1.69824 1.37903 1.33561 1.03953 0.87063 0.80899 0.82272 0.80514 1.18967 1.20530 1.17851 1.10024 0.74217 0.76495 0.73393 1.93376 1.74458 1.83966 1.46593 1.93409 1.84616 1.42721 1.74763 1.33105 1.32238 1.09621 1.04867 1.21363 0.92252 0.90936 0.95272 1.22016 0.97042 1.02873 0.99952 1.21463 0.96234 0.90734 0.90302 1.20755 0.89336 1.03527 1.02602 1.67556 1.03014 1.21184 1.29787 1.22455 0.91718 0.90920 0.92332 0.76894 0.89913 0.88649 0.90572 0.83259 0.84572 0.90311 0.90442 0.90610 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.83 19.25 29.55 0.57 -3.26 16 2 C -0.17 -3.44 13.64 -37.12 -0.51 -3.95 16 3 C 0.22 4.60 4.80 -6.83 -0.03 4.57 16 4 N -0.83 -18.78 2.43 -62.77 -0.15 -18.94 16 5 C -0.26 -6.40 9.54 -15.06 -0.14 -6.54 16 6 H 0.13 3.34 7.65 -52.48 -0.40 2.94 16 7 C 0.07 1.70 5.32 -17.43 -0.09 1.61 16 8 N -0.82 -20.60 13.97 55.49 0.78 -19.83 16 9 Si 0.87 18.27 25.05 -169.99 -4.26 14.01 16 10 H -0.26 -5.27 6.68 56.52 0.38 -4.89 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.25 -5.29 7.11 56.52 0.40 -4.89 16 13 S 2.56 57.25 5.62 -107.50 -0.60 56.65 16 14 O -0.99 -22.91 16.02 -57.17 -0.92 -23.83 16 15 O -0.97 -23.93 16.52 -57.17 -0.94 -24.87 16 16 C -0.72 -14.44 5.99 -39.44 -0.24 -14.68 16 17 C 0.03 0.52 9.65 -39.28 -0.38 0.14 16 18 C -0.20 -3.13 9.74 -39.44 -0.38 -3.51 16 19 C 0.15 2.37 6.78 -82.59 -0.56 1.81 16 20 C -0.10 -1.16 10.17 36.01 0.37 -0.80 16 21 N -0.50 -9.13 10.27 -9.47 -0.10 -9.23 16 22 C 0.18 3.50 10.69 -17.55 -0.19 3.31 16 23 H 0.21 2.85 7.80 -54.10 -0.42 2.43 16 24 H 0.08 1.69 3.08 -51.93 -0.16 1.53 16 25 H 0.10 1.72 7.48 -51.93 -0.39 1.34 16 26 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 27 H 0.15 2.65 7.82 -52.49 -0.41 2.24 16 28 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.17 2.85 7.53 -52.48 -0.40 2.45 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -30.36 298.44 -6.31 -36.67 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.02 Total: 6.15 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.59 Total: -21.28 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.53 Total: -47.99 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.86 Total: -48.70 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -4.26 Total: 14.01 kcal Atomic # 16 Polarization: 57.25 SS G_CDS: -0.60 Total: 56.65 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.36 -6.31 -36.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490950791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.086 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds