Wall clock time and date at job start Tue Mar 31 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47238 * 340.18917 * 3 2 1 5 5 C 1.36938 * 119.99882 * 274.99842 * 4 3 2 6 6 H 1.08005 * 119.99894 * 142.18456 * 5 4 3 7 7 C 1.38804 * 120.00203 * 322.18279 * 5 4 3 8 8 N 1.31626 * 120.00167 * 157.70517 * 7 5 4 9 9 Si 1.86803 * 120.00005 * 337.71085 * 7 5 4 10 10 H 1.48497 * 109.47029 * 95.31770 * 9 7 5 11 11 H 1.48508 * 109.46939 * 215.31549 * 9 7 5 12 12 H 1.48501 * 109.47150 * 335.31336 * 9 7 5 13 13 S 1.65597 * 119.99913 * 95.00174 * 4 3 2 14 14 O 1.42105 * 106.40442 * 341.21321 * 13 4 3 15 15 O 1.42098 * 106.40102 * 208.29643 * 13 4 3 16 16 C 1.76193 * 107.22207 * 94.75587 * 13 4 3 17 17 C 1.38677 * 120.42007 * 85.10189 * 16 13 4 18 18 C 1.38624 * 118.42426 * 179.75313 * 17 16 13 19 19 C 1.38230 * 119.15730 * 0.25288 * 18 17 16 20 20 C 1.50701 * 119.61624 * 180.02562 * 19 18 17 21 21 N 1.31850 * 120.76676 * 0.02562 * 19 18 17 22 22 C 1.31882 * 121.72631 * 359.97438 * 21 19 18 23 23 H 4.40638 * 5.51511 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47130 * 220.18568 * 3 2 1 25 25 H 1.09003 * 109.47133 * 100.19333 * 3 2 1 26 26 H 0.96995 * 119.99928 * 179.97438 * 8 7 5 27 27 H 1.07998 * 120.78823 * 0.02611 * 17 16 13 28 28 H 1.07995 * 120.42202 * 180.23079 * 18 17 16 29 29 H 1.09002 * 109.47156 * 89.99741 * 20 19 18 30 30 H 1.08999 * 109.46845 * 209.99504 * 20 19 18 31 31 H 1.08999 * 109.47138 * 329.99323 * 20 19 18 32 32 H 1.08006 * 119.62093 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2986 0.4681 5 6 3.2658 -1.5378 1.8101 6 1 3.0229 -2.5107 2.2114 7 6 3.7108 -0.5301 2.6546 8 7 3.4347 -0.5793 3.9406 9 14 4.7014 0.8961 1.9660 10 1 3.7937 2.0351 1.6765 11 1 5.7212 1.3162 2.9604 12 1 5.3768 0.4707 0.7137 13 16 3.5293 -2.4778 -0.6256 14 8 2.8928 -2.1229 -1.8455 15 8 3.3156 -3.7204 0.0297 16 6 5.2631 -2.3605 -0.9166 17 6 6.1613 -2.9972 -0.0734 18 6 7.5160 -2.8817 -0.3439 19 6 7.9238 -2.1367 -1.4345 20 6 9.3939 -2.0047 -1.7386 21 7 7.0415 -1.5401 -2.2118 22 6 5.7454 -1.6282 -1.9846 23 1 -1.0498 -0.0004 0.0003 24 1 3.0090 0.7859 0.6631 25 1 3.0092 0.1827 -1.0115 26 1 3.7459 0.1247 4.5307 27 1 5.8135 -3.5730 0.7715 28 1 8.2435 -3.3674 0.2895 29 1 9.7015 -2.8124 -2.4028 30 1 9.5802 -1.0458 -2.2220 31 1 9.9633 -2.0606 -0.8108 32 1 5.0526 -1.1260 -2.6437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490950791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:52 Heat of formation + Delta-G solvation = 9.719588 kcal Electronic energy + Delta-G solvation = -19905.652860 eV Core-core repulsion = 16766.805284 eV Total energy + Delta-G solvation = -3138.847576 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20768 -38.26305 -38.04037 -36.67258 -34.48965 -34.17748 -33.40908 -33.22238 -28.83449 -28.51321 -25.98675 -24.80492 -23.46821 -20.46013 -20.16088 -19.29154 -18.34217 -18.17305 -17.83468 -17.34718 -16.85390 -16.06281 -15.56475 -15.44896 -15.14948 -15.00534 -14.82527 -14.40884 -14.27503 -13.49629 -13.46901 -13.14137 -13.10918 -13.07679 -12.93402 -12.74630 -12.58498 -12.13145 -12.06178 -11.43833 -11.22139 -11.12102 -10.79588 -10.66493 -10.31314 -10.17873 -8.62695 -6.22005 -0.54261 -0.26187 0.12997 1.18506 1.31358 1.38573 1.73857 1.98171 2.12198 2.36156 2.56519 2.76379 2.96367 3.22735 3.42734 3.60503 3.67327 3.87404 4.05598 4.13347 4.26295 4.35264 4.57260 4.65948 4.74402 4.86112 4.95214 5.01182 5.10578 5.17717 5.50225 5.58604 6.12905 6.72432 6.76102 6.86993 6.92014 8.48988 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.008509 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.959465 B = 3289.653782 C = 3947.202925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.230 4.230 3 C 0.211 3.789 4 N -0.841 5.841 5 C -0.292 4.292 6 H 0.084 0.916 7 C 0.041 3.959 8 N -0.870 5.870 9 Si 0.912 3.088 10 H -0.248 1.248 11 H -0.277 1.277 12 H -0.249 1.249 13 S 2.609 3.391 14 O -0.998 6.998 15 O -0.995 6.995 16 C -0.740 4.740 17 C 0.011 3.989 18 C -0.192 4.192 19 C 0.153 3.847 20 C -0.103 4.103 21 N -0.516 5.516 22 C 0.180 3.820 23 H 0.256 0.744 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.287 0.713 27 H 0.147 0.853 28 H 0.178 0.822 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 2.096 -7.266 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.232 4.232 3 C 0.087 3.913 4 N -0.667 5.667 5 C -0.433 4.433 6 H 0.102 0.898 7 C -0.170 4.170 8 N -0.506 5.506 9 Si 0.735 3.265 10 H -0.173 1.173 11 H -0.203 1.203 12 H -0.173 1.173 13 S 2.710 3.290 14 O -0.988 6.988 15 O -0.985 6.985 16 C -0.826 4.826 17 C -0.015 4.015 18 C -0.212 4.212 19 C 0.016 3.984 20 C -0.160 4.160 21 N -0.227 5.227 22 C 0.021 3.979 23 H 0.273 0.727 24 H 0.102 0.898 25 H 0.134 0.866 26 H 0.097 0.903 27 H 0.164 0.836 28 H 0.196 0.804 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.420 1.950 -8.376 12.035 hybrid contribution 0.269 0.162 1.022 1.069 sum 8.689 2.112 -7.354 11.578 Atomic orbital electron populations 1.25749 0.96679 0.97590 1.00010 1.23799 0.95530 1.02630 1.01248 1.18520 0.85339 0.86579 1.00877 1.53370 1.69695 1.27957 1.15642 1.18790 1.43001 1.01735 0.79800 0.89802 1.26140 0.95347 1.00638 0.94896 1.69899 1.40224 1.35243 1.05266 0.86340 0.79903 0.80218 0.79999 1.17342 1.20337 1.17255 1.06800 0.74687 0.74988 0.72533 1.93387 1.75219 1.84062 1.46165 1.93394 1.85648 1.43879 1.75604 1.32441 1.29889 1.12948 1.07309 1.21574 0.93812 0.91066 0.95087 1.22459 0.96293 1.02197 1.00211 1.22379 0.98278 0.88577 0.89121 1.20942 0.85866 1.04573 1.04635 1.67687 1.02588 1.21913 1.30469 1.22668 0.92776 0.90511 0.91924 0.72737 0.89840 0.86562 0.90283 0.83552 0.80442 0.88122 0.90002 0.87813 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.33 19.25 74.32 1.43 -4.89 16 2 C -0.23 -9.45 13.64 31.13 0.42 -9.02 16 3 C 0.21 8.77 4.80 84.57 0.41 9.18 16 4 N -0.84 -39.07 2.43 -352.51 -0.86 -39.93 16 5 C -0.29 -15.14 9.54 84.03 0.80 -14.34 16 6 H 0.08 4.88 7.65 -2.91 -0.02 4.86 16 7 C 0.04 2.07 5.32 84.86 0.45 2.53 16 8 N -0.87 -46.18 13.97 21.65 0.30 -45.88 16 9 Si 0.91 37.79 25.05 68.60 1.72 39.51 16 10 H -0.25 -9.53 6.68 99.48 0.66 -8.87 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 13 S 2.61 117.56 5.62 -56.49 -0.32 117.24 16 14 O -1.00 -45.38 16.02 -128.00 -2.05 -47.43 16 15 O -0.99 -50.66 16.52 -128.00 -2.11 -52.77 16 16 C -0.74 -29.05 5.99 22.36 0.13 -28.92 16 17 C 0.01 0.39 9.65 22.47 0.22 0.61 16 18 C -0.19 -5.38 9.74 22.36 0.22 -5.16 16 19 C 0.15 4.25 6.78 42.55 0.29 4.54 16 20 C -0.10 -1.76 10.17 71.24 0.72 -1.03 16 21 N -0.52 -17.09 10.27 -183.88 -1.89 -18.98 16 22 C 0.18 6.48 10.69 84.67 0.91 7.39 16 23 H 0.26 6.04 7.80 -4.43 -0.03 6.00 16 24 H 0.08 3.40 3.08 -2.39 -0.01 3.40 16 25 H 0.12 4.14 7.48 -2.39 -0.02 4.12 16 26 H 0.29 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.15 5.23 7.82 -2.91 -0.02 5.21 16 28 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.18 5.74 7.53 -2.91 -0.02 5.72 16 Total: -1.00 -68.08 298.44 1.89 -66.18 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 1.10 Total: 21.17 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 6.00 Total: -39.12 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -2.44 Total: -104.79 kcal Atomic # 8 Polarization: -96.03 SS G_CDS: -4.16 Total: -100.20 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.72 Total: 39.51 kcal Atomic # 16 Polarization: 117.56 SS G_CDS: -0.32 Total: 117.24 kcal Total: -68.08 1.89 -66.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490950791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.902 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds