Wall clock time and date at job start Tue Mar 31 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47452 * 348.05836 * 3 2 1 5 5 C 1.36943 * 120.00207 * 97.70541 * 4 3 2 6 6 H 1.08002 * 119.99858 * 157.53877 * 5 4 3 7 7 C 1.38980 * 120.00100 * 337.81865 * 5 4 3 8 8 N 1.31407 * 120.00071 * 357.19710 * 7 5 4 9 9 Si 1.86800 * 119.99822 * 177.19783 * 7 5 4 10 10 H 1.48499 * 109.47205 * 60.00314 * 9 7 5 11 11 H 1.48508 * 109.46688 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47590 * 299.99891 * 9 7 5 13 13 C 1.34784 * 119.99614 * 277.70578 * 4 3 2 14 14 O 1.21665 * 119.99780 * 176.56001 * 13 4 3 15 15 C 1.47171 * 120.00200 * 356.56571 * 13 4 3 16 16 C 1.35295 * 123.15126 * 188.43553 * 15 13 4 17 17 S 1.70946 * 108.81778 * 179.97438 * 16 15 13 18 18 C 1.70766 * 91.13762 * 0.28193 * 17 16 15 19 19 C 1.50701 * 124.71110 * 179.85128 * 18 17 16 20 20 O 1.42894 * 109.47292 * 269.98134 * 19 18 17 21 21 C 1.42901 * 114.00004 * 180.02562 * 20 19 18 22 22 N 1.28645 * 110.57834 * 359.83572 * 18 17 16 23 23 H 4.40643 * 5.51504 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.47275 * 228.05504 * 3 2 1 25 25 H 1.09003 * 109.47277 * 108.05574 * 3 2 1 26 26 H 0.96998 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.07995 * 125.59410 * 0.03256 * 16 15 13 28 28 H 1.09003 * 109.46876 * 29.98036 * 19 18 17 29 29 H 1.08998 * 109.46872 * 149.97395 * 19 18 17 30 30 H 1.08993 * 109.47352 * 59.99751 * 21 20 19 31 31 H 1.09005 * 109.47103 * 179.97438 * 21 20 19 32 32 H 1.08998 * 109.46987 * 299.99105 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3504 0.2858 5 6 3.5135 -2.1732 -0.7414 6 1 4.1918 -2.9927 -0.5549 7 6 3.0295 -1.9501 -2.0249 8 7 2.1658 -0.9839 -2.2428 9 14 3.6066 -3.0237 -3.4404 10 1 3.2524 -4.4392 -3.1645 11 1 2.9462 -2.5845 -4.6960 12 1 5.0793 -2.9014 -3.5862 13 6 3.2122 -1.7836 1.5598 14 8 3.5586 -2.9262 1.7938 15 6 2.8775 -0.8746 2.6677 16 6 3.0890 -1.1836 3.9679 17 16 2.5711 0.1259 4.9371 18 6 2.0949 1.0060 3.5533 19 6 1.4841 2.3834 3.5806 20 8 0.0619 2.2723 3.6641 21 6 -0.6184 3.5286 3.6956 22 7 2.3303 0.3301 2.4844 23 1 -1.0498 -0.0004 0.0003 24 1 3.0090 0.6878 0.7644 25 1 3.0092 0.3193 -0.9771 26 1 1.8283 -0.8280 -3.1386 27 1 3.5160 -2.1057 4.3334 28 1 1.8574 2.9293 4.4471 29 1 1.7540 2.9186 2.6702 30 1 -0.3922 4.0871 2.7874 31 1 -1.6932 3.3583 3.7589 32 1 -0.2888 4.0986 4.5643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:17 Heat of formation + Delta-G solvation = 55.427109 kcal Electronic energy + Delta-G solvation = -19559.271256 eV Core-core repulsion = 16422.405707 eV Total energy + Delta-G solvation = -3136.865549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93397 -38.09094 -37.35715 -35.14949 -31.99933 -31.19402 -31.03080 -27.93226 -26.64824 -25.93407 -25.29568 -23.42331 -20.69687 -19.16927 -18.03520 -17.70641 -16.63270 -16.40117 -15.85195 -15.62528 -15.36112 -14.73451 -14.44091 -14.01196 -13.67389 -13.31962 -12.93044 -12.56486 -12.27976 -12.14099 -12.11495 -11.50556 -11.42607 -11.32973 -11.02992 -10.56074 -10.38824 -9.82094 -9.42424 -9.27547 -9.22663 -9.06457 -8.67182 -8.53966 -8.37352 -7.79314 -6.30542 -3.92330 0.87955 1.58067 1.98662 2.56564 3.20865 3.23643 3.27048 3.73490 3.97029 4.17520 4.30588 4.43167 4.53945 4.90506 5.07315 5.15378 5.22808 5.25182 5.41264 5.48728 5.57592 5.72910 5.84600 5.92835 6.31332 6.90736 6.99713 7.13018 7.34086 7.49356 7.88061 8.07044 8.44560 9.07912 9.12778 9.31331 9.89306 10.63478 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.006051 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.883823 B = 4626.024552 C = 5656.634283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.075 4.075 3 C 0.221 3.779 4 N -0.411 5.411 5 C -0.303 4.303 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.861 5.861 9 Si 0.934 3.066 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.502 3.498 14 O -0.585 6.585 15 C 0.045 3.955 16 C -0.240 4.240 17 S 0.177 5.823 18 C 0.008 3.992 19 C 0.146 3.854 20 O -0.379 6.379 21 C 0.033 3.967 22 N -0.405 5.405 23 H 0.192 0.808 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.271 0.729 27 H 0.184 0.816 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 10.830 10.848 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.076 4.076 3 C 0.099 3.901 4 N -0.126 5.126 5 C -0.431 4.431 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.499 5.499 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.289 3.711 14 O -0.471 6.471 15 C -0.089 4.089 16 C -0.382 4.382 17 S 0.432 5.568 18 C -0.271 4.271 19 C 0.066 3.934 20 O -0.297 6.297 21 C -0.064 4.064 22 N -0.123 5.123 23 H 0.210 0.790 24 H 0.104 0.896 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.201 0.799 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.834 10.612 11.275 15.592 hybrid contribution 0.023 -0.837 -1.583 1.791 sum -1.811 9.775 9.692 13.884 Atomic orbital electron populations 1.24073 0.95240 1.03354 1.08214 1.22931 0.93990 0.97068 0.93625 1.18877 0.84595 0.84069 1.02599 1.43601 1.52373 1.12460 1.04172 1.19752 1.25726 1.11582 0.86072 0.87806 1.25482 0.95351 0.97298 0.99250 1.70012 1.27970 1.29260 1.22690 0.85872 0.78770 0.80078 0.79240 1.19698 1.20800 1.19696 1.16869 0.86302 0.85997 0.81920 1.90634 1.54684 1.18300 1.83454 1.20978 1.01596 0.91756 0.94572 1.26429 1.09565 1.05679 0.96540 1.82367 1.54517 1.07332 1.12534 1.26703 1.06209 1.02155 0.92003 1.20698 0.81521 0.89203 1.01962 1.88000 1.17258 1.29338 1.95135 1.22760 0.97771 0.85783 1.00059 1.67454 1.11211 1.04982 1.28666 0.79039 0.89614 0.86531 0.91788 0.79882 0.91337 0.90138 0.93642 0.89416 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.82 19.25 29.55 0.57 -6.25 16 2 C -0.07 -1.86 10.39 -37.12 -0.39 -2.25 16 3 C 0.22 5.45 4.75 -6.83 -0.03 5.42 16 4 N -0.41 -11.17 2.61 -119.24 -0.31 -11.48 16 5 C -0.30 -8.55 9.30 -14.99 -0.14 -8.69 16 6 H 0.10 2.99 7.41 -52.49 -0.39 2.61 16 7 C 0.03 0.82 5.26 -17.46 -0.09 0.73 16 8 N -0.86 -22.99 8.87 55.50 0.49 -22.50 16 9 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.50 13.38 7.50 -12.63 -0.09 13.29 16 14 O -0.59 -16.99 16.45 5.22 0.09 -16.90 16 15 C 0.05 1.00 6.44 -84.53 -0.54 0.45 16 16 C -0.24 -4.36 10.63 29.68 0.32 -4.04 16 17 S 0.18 2.45 22.92 -107.50 -2.46 -0.01 16 18 C 0.01 0.13 6.97 -13.61 -0.09 0.04 16 19 C 0.15 1.86 6.51 36.01 0.23 2.09 16 20 O -0.38 -5.29 10.69 -35.23 -0.38 -5.67 16 21 C 0.03 0.31 11.01 101.05 1.11 1.42 16 22 N -0.41 -8.18 5.80 -8.51 -0.05 -8.23 16 23 H 0.19 3.82 7.80 -54.10 -0.42 3.39 16 24 H 0.09 1.95 5.43 -51.93 -0.28 1.67 16 25 H 0.12 2.99 6.03 -51.93 -0.31 2.67 16 26 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.18 3.13 8.04 -52.49 -0.42 2.71 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -33.39 299.96 -5.35 -38.75 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -3.08 Total: 3.59 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 0.85 Total: 2.21 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.13 Total: -42.21 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.29 Total: -22.57 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.46 Total: -0.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.39 -5.35 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.174 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds