Wall clock time and date at job start Tue Mar 31 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47452 * 348.05836 * 3 2 1 5 5 C 1.36943 * 120.00207 * 97.70541 * 4 3 2 6 6 H 1.08002 * 119.99858 * 157.53877 * 5 4 3 7 7 C 1.38980 * 120.00100 * 337.81865 * 5 4 3 8 8 N 1.31407 * 120.00071 * 357.19710 * 7 5 4 9 9 Si 1.86800 * 119.99822 * 177.19783 * 7 5 4 10 10 H 1.48499 * 109.47205 * 60.00314 * 9 7 5 11 11 H 1.48508 * 109.46688 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47590 * 299.99891 * 9 7 5 13 13 C 1.34784 * 119.99614 * 277.70578 * 4 3 2 14 14 O 1.21665 * 119.99780 * 176.56001 * 13 4 3 15 15 C 1.47171 * 120.00200 * 356.56571 * 13 4 3 16 16 C 1.35295 * 123.15126 * 188.43553 * 15 13 4 17 17 S 1.70946 * 108.81778 * 179.97438 * 16 15 13 18 18 C 1.70766 * 91.13762 * 0.28193 * 17 16 15 19 19 C 1.50701 * 124.71110 * 179.85128 * 18 17 16 20 20 O 1.42894 * 109.47292 * 269.98134 * 19 18 17 21 21 C 1.42901 * 114.00004 * 180.02562 * 20 19 18 22 22 N 1.28645 * 110.57834 * 359.83572 * 18 17 16 23 23 H 4.40643 * 5.51504 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.47275 * 228.05504 * 3 2 1 25 25 H 1.09003 * 109.47277 * 108.05574 * 3 2 1 26 26 H 0.96998 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.07995 * 125.59410 * 0.03256 * 16 15 13 28 28 H 1.09003 * 109.46876 * 29.98036 * 19 18 17 29 29 H 1.08998 * 109.46872 * 149.97395 * 19 18 17 30 30 H 1.08993 * 109.47352 * 59.99751 * 21 20 19 31 31 H 1.09005 * 109.47103 * 179.97438 * 21 20 19 32 32 H 1.08998 * 109.46987 * 299.99105 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3504 0.2858 5 6 3.5135 -2.1732 -0.7414 6 1 4.1918 -2.9927 -0.5549 7 6 3.0295 -1.9501 -2.0249 8 7 2.1658 -0.9839 -2.2428 9 14 3.6066 -3.0237 -3.4404 10 1 3.2524 -4.4392 -3.1645 11 1 2.9462 -2.5845 -4.6960 12 1 5.0793 -2.9014 -3.5862 13 6 3.2122 -1.7836 1.5598 14 8 3.5586 -2.9262 1.7938 15 6 2.8775 -0.8746 2.6677 16 6 3.0890 -1.1836 3.9679 17 16 2.5711 0.1259 4.9371 18 6 2.0949 1.0060 3.5533 19 6 1.4841 2.3834 3.5806 20 8 0.0619 2.2723 3.6641 21 6 -0.6184 3.5286 3.6956 22 7 2.3303 0.3301 2.4844 23 1 -1.0498 -0.0004 0.0003 24 1 3.0090 0.6878 0.7644 25 1 3.0092 0.3193 -0.9771 26 1 1.8283 -0.8280 -3.1386 27 1 3.5160 -2.1057 4.3334 28 1 1.8574 2.9293 4.4471 29 1 1.7540 2.9186 2.6702 30 1 -0.3922 4.0871 2.7874 31 1 -1.6932 3.3583 3.7589 32 1 -0.2888 4.0986 4.5643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490963312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:16 Heat of formation + Delta-G solvation = 32.467749 kcal Electronic energy + Delta-G solvation = -19560.266848 eV Core-core repulsion = 16422.405707 eV Total energy + Delta-G solvation = -3137.861142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51907 -39.62127 -38.56814 -37.17226 -33.97793 -33.00801 -32.46064 -29.08809 -28.51019 -27.27441 -26.75082 -25.05543 -22.16953 -20.71560 -19.68815 -19.61257 -18.33643 -17.55012 -17.28689 -16.97100 -16.57681 -16.38721 -16.17768 -15.79368 -15.06161 -14.92262 -14.51025 -14.24087 -14.05895 -13.54559 -13.25717 -13.07337 -12.85827 -12.83870 -12.58613 -12.29167 -12.15727 -11.31054 -11.08219 -10.78911 -10.70014 -10.67452 -10.52159 -10.30809 -9.83670 -9.76891 -8.30468 -6.04413 -0.47242 0.33633 0.63585 1.00594 1.39638 1.46386 1.51511 2.08474 2.29176 2.37764 2.60850 2.76401 3.11509 3.17308 3.46182 3.91727 4.03107 4.18616 4.27297 4.33938 4.51316 4.59084 4.65733 4.73104 4.93536 5.08865 5.19267 5.37522 5.51224 6.00186 6.17150 6.34991 6.61698 7.03609 7.23502 7.31802 7.87805 8.61419 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.006051 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.883823 B = 4626.024552 C = 5656.634283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.105 4.105 3 C 0.232 3.768 4 N -0.426 5.426 5 C -0.347 4.347 6 H 0.082 0.918 7 C -0.001 4.001 8 N -0.875 5.875 9 Si 1.000 3.000 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.262 1.262 13 C 0.491 3.509 14 O -0.627 6.627 15 C 0.007 3.993 16 C -0.250 4.250 17 S 0.313 5.687 18 C -0.009 4.009 19 C 0.144 3.856 20 O -0.411 6.411 21 C 0.027 3.973 22 N -0.440 5.440 23 H 0.224 0.776 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.275 0.725 27 H 0.187 0.813 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 12.594 12.520 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.106 4.106 3 C 0.110 3.890 4 N -0.141 5.141 5 C -0.475 4.475 6 H 0.100 0.900 7 C -0.204 4.204 8 N -0.512 5.512 9 Si 0.822 3.178 10 H -0.204 1.204 11 H -0.193 1.193 12 H -0.186 1.186 13 C 0.279 3.721 14 O -0.516 6.516 15 C -0.128 4.128 16 C -0.393 4.393 17 S 0.570 5.430 18 C -0.287 4.287 19 C 0.064 3.936 20 O -0.330 6.330 21 C -0.069 4.069 22 N -0.158 5.158 23 H 0.241 0.759 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.205 0.795 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.711 12.439 12.966 18.171 hybrid contribution 0.223 -1.290 -1.854 2.269 sum -2.488 11.149 11.112 15.936 Atomic orbital electron populations 1.24863 0.96183 1.02118 1.07107 1.23188 0.94545 0.98212 0.94670 1.18785 0.84869 0.83311 1.02074 1.43790 1.52744 1.13175 1.04377 1.19763 1.27562 1.12530 0.87666 0.90031 1.26263 0.95017 0.98296 1.00845 1.70127 1.28016 1.29758 1.23286 0.84910 0.78903 0.77665 0.76287 1.20417 1.19256 1.18622 1.17605 0.85069 0.86434 0.82960 1.90561 1.56317 1.20304 1.84428 1.20402 1.05337 0.92924 0.94136 1.26787 1.08088 1.07722 0.96692 1.81845 1.50442 1.02548 1.08183 1.27409 1.05267 1.03350 0.92677 1.20940 0.81362 0.87282 1.03991 1.87934 1.17741 1.31942 1.95430 1.22976 0.97884 0.84531 1.01464 1.67313 1.12689 1.04712 1.31119 0.75948 0.87970 0.88296 0.91473 0.79542 0.87006 0.90250 0.93365 0.88752 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.25 19.25 74.32 1.43 -11.82 16 2 C -0.10 -5.31 10.39 31.12 0.32 -4.98 16 3 C 0.23 11.84 4.75 84.57 0.40 12.24 16 4 N -0.43 -24.32 2.61 -649.39 -1.69 -26.02 16 5 C -0.35 -20.64 9.30 84.07 0.78 -19.86 16 6 H 0.08 5.05 7.41 -2.91 -0.02 5.03 16 7 C 0.00 -0.06 5.26 84.93 0.45 0.39 16 8 N -0.87 -47.62 8.87 21.67 0.19 -47.42 16 9 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.49 27.45 7.50 86.59 0.65 28.10 16 14 O -0.63 -38.51 16.45 -4.24 -0.07 -38.58 16 15 C 0.01 0.31 6.44 40.55 0.26 0.57 16 16 C -0.25 -8.84 10.63 67.14 0.71 -8.12 16 17 S 0.31 7.50 22.92 -56.49 -1.29 6.20 16 18 C -0.01 -0.26 6.97 88.58 0.62 0.35 16 19 C 0.14 3.20 6.51 71.24 0.46 3.67 16 20 O -0.41 -10.31 10.69 -148.98 -1.59 -11.90 16 21 C 0.03 0.43 11.01 113.37 1.25 1.68 16 22 N -0.44 -17.62 5.80 -180.85 -1.05 -18.67 16 23 H 0.22 8.49 7.80 -4.42 -0.03 8.45 16 24 H 0.10 4.81 5.43 -2.38 -0.01 4.79 16 25 H 0.10 5.30 6.03 -2.39 -0.01 5.29 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.19 6.30 8.04 -2.91 -0.02 6.28 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -76.70 299.96 5.00 -71.69 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.15 Total: 17.05 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 7.34 Total: 2.20 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.55 Total: -92.11 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -1.66 Total: -50.48 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 7.50 SS G_CDS: -1.29 Total: 6.20 kcal Total: -76.70 5.00 -71.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.160 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds