Wall clock time and date at job start Tue Mar 31 2020 01:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47441 * 23.31985 * 3 2 1 5 5 C 1.36934 * 119.99731 * 273.23816 * 4 3 2 6 6 H 1.08000 * 119.99782 * 189.24495 * 5 4 3 7 7 C 1.38809 * 120.00193 * 9.23860 * 5 4 3 8 8 N 1.31619 * 120.00311 * 12.19128 * 7 5 4 9 9 Si 1.86806 * 120.00174 * 192.18508 * 7 5 4 10 10 H 1.48503 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46929 * 120.00130 * 9 7 5 12 12 H 1.48496 * 109.47510 * 240.00441 * 9 7 5 13 13 S 1.65596 * 120.00067 * 93.23400 * 4 3 2 14 14 O 1.42106 * 106.40334 * 328.89641 * 13 4 3 15 15 O 1.42101 * 106.40303 * 195.98099 * 13 4 3 16 16 C 1.76202 * 107.22027 * 82.43567 * 13 4 3 17 17 C 1.38225 * 120.42252 * 244.68988 * 16 13 4 18 18 N 1.31854 * 120.76367 * 179.97438 * 17 16 13 19 19 C 1.31876 * 121.72606 * 359.97438 * 18 17 16 20 20 C 1.38187 * 120.76754 * 359.97438 * 19 18 17 21 21 C 1.38629 * 120.41458 * 64.64129 * 16 13 4 22 22 C 1.50698 * 120.79263 * 0.02738 * 21 16 13 23 23 H 4.40642 * 5.51372 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47415 * 263.31864 * 3 2 1 25 25 H 1.09003 * 109.47063 * 143.32211 * 3 2 1 26 26 H 0.96999 * 120.00570 * 179.97438 * 8 7 5 27 27 H 1.08002 * 119.61423 * 359.95546 * 17 16 13 28 28 H 1.07997 * 119.61846 * 180.02562 * 19 18 17 29 29 H 1.07997 * 120.41666 * 179.74761 * 20 19 18 30 30 H 1.08996 * 109.47058 * 275.62823 * 22 21 16 31 31 H 1.09000 * 109.47289 * 35.62414 * 22 21 16 32 32 H 1.08997 * 109.47412 * 155.62971 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2675 -0.5468 5 6 3.3005 -2.3494 0.2762 6 1 3.7986 -3.2350 -0.0898 7 6 2.8283 -2.3077 1.5808 8 7 2.0187 -1.3407 1.9572 9 14 3.3418 -3.6243 2.8025 10 1 4.2506 -4.5911 2.1355 11 1 4.0467 -2.9908 3.9458 12 1 2.1370 -4.3374 3.2975 13 16 3.4873 -1.3926 -2.1600 14 8 2.6034 -0.5070 -2.8337 15 8 3.5635 -2.7822 -2.4474 16 6 5.1103 -0.7468 -2.3910 17 6 5.3092 0.3923 -3.1483 18 7 6.5207 0.8816 -3.3251 19 6 7.5836 0.3113 -2.7921 20 6 7.4623 -0.8297 -2.0220 21 6 6.2039 -1.3743 -1.8147 22 6 6.0294 -2.6180 -0.9817 23 1 -1.0498 -0.0002 -0.0003 24 1 3.0093 0.1204 1.0207 25 1 3.0089 0.8250 -0.6139 26 1 1.6884 -1.3118 2.8688 27 1 4.4624 0.8870 -3.6005 28 1 8.5601 0.7413 -2.9587 29 1 8.3370 -1.2944 -1.5916 30 1 5.7772 -2.3379 0.0410 31 1 5.2272 -3.2259 -1.4002 32 1 6.9573 -3.1897 -0.9835 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491782196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:29 Heat of formation + Delta-G solvation = 43.746390 kcal Electronic energy + Delta-G solvation = -20307.620082 eV Core-core repulsion = 17170.248019 eV Total energy + Delta-G solvation = -3137.372063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.93167 -36.52952 -36.29423 -34.98538 -33.70244 -31.74199 -31.21310 -31.00843 -27.69955 -26.40020 -23.92617 -23.56884 -22.07949 -18.80605 -17.94812 -17.53471 -16.81678 -16.45983 -16.16420 -15.92457 -14.56052 -14.48047 -14.20184 -14.05367 -13.44404 -13.28192 -12.62858 -12.61748 -12.47091 -12.42306 -12.03885 -11.53114 -11.33937 -11.12749 -11.02300 -10.93754 -10.54434 -10.38820 -10.16601 -9.80504 -9.48581 -9.26457 -9.16461 -9.06818 -8.74953 -8.17203 -6.22480 -3.92639 0.86655 1.27962 1.39287 3.13979 3.23222 3.24961 3.64105 3.87436 4.15227 4.33886 4.42718 4.55910 4.63549 4.79234 4.96247 5.00804 5.05956 5.43953 5.55342 5.68704 5.69802 5.82376 6.02909 6.08155 6.16874 6.35210 6.60581 6.79588 6.83447 7.09786 7.34198 7.51416 7.97700 8.31756 8.82643 9.06928 9.20713 10.71453 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.008624 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.238556 B = 3246.121248 C = 4049.830529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.088 4.088 3 C 0.250 3.750 4 N -0.838 5.838 5 C -0.321 4.321 6 H 0.117 0.883 7 C 0.041 3.959 8 N -0.868 5.868 9 Si 0.914 3.086 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.282 1.282 13 S 2.664 3.336 14 O -0.972 6.972 15 O -0.962 6.962 16 C -0.736 4.736 17 C 0.190 3.810 18 N -0.510 5.510 19 C 0.136 3.864 20 C -0.205 4.205 21 C 0.074 3.926 22 C -0.174 4.174 23 H 0.196 0.804 24 H 0.124 0.876 25 H 0.051 0.949 26 H 0.266 0.734 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 1.643 -2.586 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.091 4.091 3 C 0.125 3.875 4 N -0.670 5.670 5 C -0.452 4.452 6 H 0.135 0.865 7 C -0.165 4.165 8 N -0.508 5.508 9 Si 0.740 3.260 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.208 1.208 13 S 2.751 3.249 14 O -0.962 6.962 15 O -0.952 6.952 16 C -0.819 4.819 17 C 0.031 3.969 18 N -0.220 5.220 19 C -0.020 4.020 20 C -0.226 4.226 21 C 0.066 3.934 22 C -0.230 4.230 23 H 0.213 0.787 24 H 0.142 0.858 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.187 0.813 28 H 0.173 0.827 29 H 0.155 0.845 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.713 2.128 -3.643 8.791 hybrid contribution 0.636 -1.013 1.532 1.944 sum 8.349 1.115 -2.110 8.684 Atomic orbital electron populations 1.24163 0.95327 1.03450 1.06806 1.22967 0.94154 0.96978 0.94954 1.18034 0.84690 0.83097 1.01677 1.53149 1.71725 1.16492 1.25650 1.19562 1.38740 0.92837 0.94040 0.86543 1.25104 0.95669 0.98002 0.97685 1.70055 1.29535 1.32740 1.18425 0.86081 0.78710 0.80601 0.80576 1.19182 1.20755 1.20810 1.03323 0.74449 0.73567 0.73525 1.93502 1.62035 1.67228 1.73397 1.93432 1.86850 1.30910 1.84019 1.32805 1.27043 1.09986 1.12021 1.22604 0.95159 0.89383 0.89708 1.67779 0.99340 1.32437 1.22455 1.22932 0.97531 0.91241 0.90315 1.22108 0.98078 0.99230 1.03177 1.20033 0.91642 0.93219 0.88531 1.21897 1.05190 0.94252 1.01622 0.78666 0.85816 0.93114 0.92220 0.81258 0.82700 0.84477 0.87026 0.86931 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.22 19.25 29.55 0.57 -5.65 16 2 C -0.09 -2.09 11.33 -37.12 -0.42 -2.51 16 3 C 0.25 5.59 5.10 -6.83 -0.03 5.55 16 4 N -0.84 -19.06 2.87 -62.77 -0.18 -19.24 16 5 C -0.32 -7.57 7.42 -15.06 -0.11 -7.68 16 6 H 0.12 2.66 5.33 -52.49 -0.28 2.38 16 7 C 0.04 0.97 5.21 -17.43 -0.09 0.88 16 8 N -0.87 -21.46 8.39 55.49 0.47 -20.99 16 9 Si 0.91 18.80 29.57 -169.99 -5.03 13.77 16 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 13 S 2.66 57.28 5.01 -107.50 -0.54 56.74 16 14 O -0.97 -22.24 16.28 -57.17 -0.93 -23.17 16 15 O -0.96 -22.31 14.38 -57.17 -0.82 -23.14 16 16 C -0.74 -13.64 5.92 -39.44 -0.23 -13.87 16 17 C 0.19 3.32 10.71 -17.55 -0.19 3.13 16 18 N -0.51 -8.37 10.36 -13.25 -0.14 -8.50 16 19 C 0.14 1.87 11.18 -17.55 -0.20 1.67 16 20 C -0.21 -2.86 9.80 -39.44 -0.39 -3.24 16 21 C 0.07 1.25 5.91 -104.32 -0.62 0.63 16 22 C -0.17 -2.81 8.12 36.00 0.29 -2.52 16 23 H 0.20 3.60 7.80 -54.10 -0.42 3.18 16 24 H 0.12 2.83 6.14 -51.93 -0.32 2.51 16 25 H 0.05 1.00 7.87 -51.93 -0.41 0.59 16 26 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 27 H 0.17 2.76 7.35 -52.49 -0.39 2.37 16 28 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.11 1.85 6.80 -51.93 -0.35 1.50 16 31 H 0.11 2.08 4.22 -51.93 -0.22 1.86 16 32 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 LS Contribution 286.15 15.07 4.31 4.31 Total: -1.00 -29.57 286.15 -7.06 -36.63 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -2.79 Total: 7.19 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -1.42 Total: -23.61 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.15 Total: -48.74 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -1.75 Total: -46.30 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: 57.28 SS G_CDS: -0.54 Total: 56.74 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.57 -7.06 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491782196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.379 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds