Wall clock time and date at job start Tue Mar 31 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47441 * 23.31985 * 3 2 1 5 5 C 1.36934 * 119.99731 * 273.23816 * 4 3 2 6 6 H 1.08000 * 119.99782 * 189.24495 * 5 4 3 7 7 C 1.38809 * 120.00193 * 9.23860 * 5 4 3 8 8 N 1.31619 * 120.00311 * 12.19128 * 7 5 4 9 9 Si 1.86806 * 120.00174 * 192.18508 * 7 5 4 10 10 H 1.48503 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46929 * 120.00130 * 9 7 5 12 12 H 1.48496 * 109.47510 * 240.00441 * 9 7 5 13 13 S 1.65596 * 120.00067 * 93.23400 * 4 3 2 14 14 O 1.42106 * 106.40334 * 328.89641 * 13 4 3 15 15 O 1.42101 * 106.40303 * 195.98099 * 13 4 3 16 16 C 1.76202 * 107.22027 * 82.43567 * 13 4 3 17 17 C 1.38225 * 120.42252 * 244.68988 * 16 13 4 18 18 N 1.31854 * 120.76367 * 179.97438 * 17 16 13 19 19 C 1.31876 * 121.72606 * 359.97438 * 18 17 16 20 20 C 1.38187 * 120.76754 * 359.97438 * 19 18 17 21 21 C 1.38629 * 120.41458 * 64.64129 * 16 13 4 22 22 C 1.50698 * 120.79263 * 0.02738 * 21 16 13 23 23 H 4.40642 * 5.51372 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47415 * 263.31864 * 3 2 1 25 25 H 1.09003 * 109.47063 * 143.32211 * 3 2 1 26 26 H 0.96999 * 120.00570 * 179.97438 * 8 7 5 27 27 H 1.08002 * 119.61423 * 359.95546 * 17 16 13 28 28 H 1.07997 * 119.61846 * 180.02562 * 19 18 17 29 29 H 1.07997 * 120.41666 * 179.74761 * 20 19 18 30 30 H 1.08996 * 109.47058 * 275.62823 * 22 21 16 31 31 H 1.09000 * 109.47289 * 35.62414 * 22 21 16 32 32 H 1.08997 * 109.47412 * 155.62971 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2675 -0.5468 5 6 3.3005 -2.3494 0.2762 6 1 3.7986 -3.2350 -0.0898 7 6 2.8283 -2.3077 1.5808 8 7 2.0187 -1.3407 1.9572 9 14 3.3418 -3.6243 2.8025 10 1 4.2506 -4.5911 2.1355 11 1 4.0467 -2.9908 3.9458 12 1 2.1370 -4.3374 3.2975 13 16 3.4873 -1.3926 -2.1600 14 8 2.6034 -0.5070 -2.8337 15 8 3.5635 -2.7822 -2.4474 16 6 5.1103 -0.7468 -2.3910 17 6 5.3092 0.3923 -3.1483 18 7 6.5207 0.8816 -3.3251 19 6 7.5836 0.3113 -2.7921 20 6 7.4623 -0.8297 -2.0220 21 6 6.2039 -1.3743 -1.8147 22 6 6.0294 -2.6180 -0.9817 23 1 -1.0498 -0.0002 -0.0003 24 1 3.0093 0.1204 1.0207 25 1 3.0089 0.8250 -0.6139 26 1 1.6884 -1.3118 2.8688 27 1 4.4624 0.8870 -3.6005 28 1 8.5601 0.7413 -2.9587 29 1 8.3370 -1.2944 -1.5916 30 1 5.7772 -2.3379 0.0410 31 1 5.2272 -3.2259 -1.4002 32 1 6.9573 -3.1897 -0.9835 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491782196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:28 Heat of formation + Delta-G solvation = 23.932074 kcal Electronic energy + Delta-G solvation = -20308.479295 eV Core-core repulsion = 17170.248019 eV Total energy + Delta-G solvation = -3138.231277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.18282 -38.30336 -38.00216 -36.78870 -34.99468 -33.49713 -32.76165 -32.47069 -29.03653 -28.07245 -25.60355 -24.94588 -23.34717 -20.50591 -19.68018 -19.14923 -18.39394 -18.03928 -17.58847 -17.23247 -16.27247 -16.15782 -15.44397 -15.37973 -15.14112 -14.93247 -14.30440 -13.88341 -13.86516 -13.70756 -13.43145 -13.26079 -13.13421 -12.85952 -12.69242 -12.63308 -12.17023 -11.94244 -11.78875 -11.48749 -10.94308 -10.79895 -10.60764 -10.49043 -10.32689 -9.93299 -7.96473 -5.74825 -0.52757 -0.28458 0.14612 1.50096 1.54830 1.64085 2.01328 2.43194 2.51771 2.58391 2.75168 2.91606 3.23473 3.40545 3.47866 3.65956 3.80009 3.99891 4.12471 4.32641 4.44278 4.52605 4.66569 4.77984 4.83296 5.08042 5.16223 5.32788 5.38405 5.59084 5.63140 5.76677 6.55182 6.75300 7.09632 7.29323 7.43865 8.97056 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.008624 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.238556 B = 3246.121248 C = 4049.830529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.128 4.128 3 C 0.254 3.746 4 N -0.858 5.858 5 C -0.332 4.332 6 H 0.118 0.882 7 C -0.003 4.003 8 N -0.899 5.899 9 Si 0.969 3.031 10 H -0.255 1.255 11 H -0.278 1.278 12 H -0.296 1.296 13 S 2.688 3.312 14 O -0.997 6.997 15 O -0.987 6.987 16 C -0.745 4.745 17 C 0.183 3.817 18 N -0.521 5.521 19 C 0.144 3.856 20 C -0.192 4.192 21 C 0.060 3.940 22 C -0.175 4.175 23 H 0.227 0.773 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.260 0.740 27 H 0.172 0.828 28 H 0.204 0.796 29 H 0.181 0.819 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.012 1.753 -3.037 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.130 4.130 3 C 0.128 3.872 4 N -0.691 5.691 5 C -0.460 4.460 6 H 0.135 0.865 7 C -0.204 4.204 8 N -0.540 5.540 9 Si 0.795 3.205 10 H -0.179 1.179 11 H -0.204 1.204 12 H -0.223 1.223 13 S 2.781 3.219 14 O -0.987 6.987 15 O -0.977 6.977 16 C -0.834 4.834 17 C 0.024 3.976 18 N -0.231 5.231 19 C -0.011 4.011 20 C -0.212 4.212 21 C 0.051 3.949 22 C -0.230 4.230 23 H 0.244 0.756 24 H 0.134 0.866 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.189 0.811 28 H 0.221 0.779 29 H 0.199 0.801 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.575 2.196 -4.057 11.538 hybrid contribution -0.122 -0.983 1.435 1.743 sum 10.454 1.213 -2.622 10.845 Atomic orbital electron populations 1.25051 0.96481 1.02594 1.05826 1.23719 0.95434 0.97953 0.95934 1.18082 0.84165 0.83466 1.01472 1.52904 1.75217 1.16696 1.24239 1.19700 1.38281 0.94274 0.93788 0.86475 1.25751 0.95862 0.99681 0.99155 1.70194 1.31432 1.34138 1.18227 0.85228 0.77852 0.78692 0.78759 1.17900 1.20392 1.22254 1.01598 0.74721 0.72787 0.72796 1.93468 1.63493 1.67678 1.74067 1.93413 1.87573 1.32427 1.84258 1.31927 1.24578 1.11686 1.15224 1.22684 0.96251 0.89007 0.89667 1.67875 0.99358 1.32756 1.23118 1.23800 0.98526 0.90557 0.88200 1.22563 0.97967 0.98720 1.01945 1.20298 0.92500 0.93527 0.88570 1.21856 1.06148 0.94172 1.00865 0.75607 0.86615 0.91361 0.92922 0.81142 0.77899 0.80119 0.87676 0.89618 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.69 19.25 74.32 1.43 -11.26 16 2 C -0.13 -6.23 11.33 31.12 0.35 -5.88 16 3 C 0.25 11.64 5.10 84.57 0.43 12.07 16 4 N -0.86 -39.88 2.87 -352.51 -1.01 -40.89 16 5 C -0.33 -15.95 7.42 84.03 0.62 -15.33 16 6 H 0.12 5.45 5.33 -2.91 -0.02 5.44 16 7 C 0.00 -0.16 5.21 84.86 0.44 0.28 16 8 N -0.90 -45.80 8.39 21.65 0.18 -45.62 16 9 Si 0.97 39.09 29.57 68.60 2.03 41.12 16 10 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 11 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 12 H -0.30 -12.45 7.11 99.48 0.71 -11.75 16 13 S 2.69 117.21 5.01 -56.49 -0.28 116.93 16 14 O -1.00 -46.55 16.28 -128.00 -2.08 -48.63 16 15 O -0.99 -46.58 14.38 -128.00 -1.84 -48.42 16 16 C -0.74 -26.81 5.92 22.36 0.13 -26.68 16 17 C 0.18 6.12 10.71 84.69 0.91 7.03 16 18 N -0.52 -15.43 10.36 -195.85 -2.03 -17.46 16 19 C 0.14 3.24 11.18 84.67 0.95 4.19 16 20 C -0.19 -4.39 9.80 22.36 0.22 -4.17 16 21 C 0.06 1.85 5.91 -19.67 -0.12 1.73 16 22 C -0.17 -5.31 8.12 71.24 0.58 -4.74 16 23 H 0.23 8.21 7.80 -4.43 -0.03 8.17 16 24 H 0.12 5.50 6.14 -2.39 -0.01 5.48 16 25 H 0.07 2.77 7.87 -2.39 -0.02 2.75 16 26 H 0.26 12.91 8.31 -92.71 -0.77 12.14 16 27 H 0.17 5.50 7.35 -2.91 -0.02 5.48 16 28 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.11 3.37 6.80 -2.39 -0.02 3.35 16 31 H 0.09 3.12 4.22 -2.39 -0.01 3.11 16 32 H 0.11 2.44 8.07 -2.39 -0.02 2.42 16 Total: -1.00 -65.22 286.15 2.06 -63.16 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.15 Total: 22.57 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 5.95 Total: -42.75 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -2.86 Total: -103.97 kcal Atomic # 8 Polarization: -93.13 SS G_CDS: -3.92 Total: -97.05 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: 117.21 SS G_CDS: -0.28 Total: 116.93 kcal Total: -65.22 2.06 -63.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491782196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.093 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds