Wall clock time and date at job start Tue Mar 31 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00100 * 2 1 4 4 H 1.48507 * 109.47120 * 239.99856 * 3 2 1 5 5 H 1.48500 * 109.47613 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47375 * 120.00092 * 3 2 1 7 7 C 1.37878 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99600 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47272 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47452 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00358 * 180.02562 * 11 10 9 13 13 O 1.21665 * 119.99785 * 359.97438 * 12 11 10 14 14 C 1.46648 * 120.00160 * 180.02562 * 12 11 10 15 15 C 1.34628 * 120.00173 * 173.25642 * 14 12 11 16 16 C 1.47412 * 119.99917 * 348.72655 * 15 14 12 17 17 C 1.40184 * 120.94365 * 312.28307 * 16 15 14 18 18 C 1.37936 * 119.00254 * 179.97438 * 17 16 15 19 19 N 1.31926 * 120.94255 * 0.02562 * 18 17 16 20 20 C 1.31954 * 122.09381 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 119.55147 * 180.02562 * 20 19 18 22 22 C 1.38198 * 120.89394 * 0.02562 * 20 19 18 23 23 H 0.97006 * 119.99852 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46782 * 60.00146 * 9 7 2 25 25 H 1.09002 * 109.47034 * 300.00350 * 9 7 2 26 26 H 1.09004 * 109.47104 * 59.99883 * 10 9 7 27 27 H 1.09002 * 109.47360 * 300.00129 * 10 9 7 28 28 H 0.97003 * 119.99284 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.00054 * 353.25787 * 14 12 11 30 30 H 1.08005 * 120.00445 * 168.72866 * 15 14 12 31 31 H 1.08000 * 120.49966 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.52818 * 180.27278 * 18 17 16 33 33 H 1.07990 * 120.52558 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5126 -4.9309 0.0033 12 6 2.1864 -6.0981 0.0047 13 8 3.4030 -6.0981 0.0051 14 6 1.4531 -7.3681 0.0047 15 6 2.1193 -8.5301 -0.1308 16 6 3.5396 -8.5237 -0.5255 17 6 3.9840 -7.7489 -1.6060 18 6 5.3220 -7.7724 -1.9403 19 7 6.1783 -8.5102 -1.2599 20 6 5.8041 -9.2544 -0.2365 21 17 6.9870 -10.1996 0.6127 22 6 4.4833 -9.2916 0.1684 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 2.8717 -3.6036 0.8927 27 1 2.8718 -3.6052 -0.8873 28 1 0.5425 -4.9307 0.0033 29 1 0.3786 -7.3712 0.1133 30 1 1.6133 -9.4670 0.0497 31 1 3.2893 -7.1419 -2.1676 32 1 5.6743 -7.1753 -2.7684 33 1 4.1835 -9.9031 1.0065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492410934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:39 Heat of formation + Delta-G solvation = 5.389569 kcal Electronic energy + Delta-G solvation = -18315.207140 eV Core-core repulsion = 15174.128094 eV Total energy + Delta-G solvation = -3141.079046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43471 -39.18563 -36.71119 -35.32054 -34.32561 -32.92567 -31.26379 -30.92715 -29.54733 -25.56130 -24.11620 -23.57499 -22.04268 -20.90020 -19.54031 -17.77734 -16.66502 -16.55598 -16.06487 -15.91368 -15.06632 -14.90785 -14.62530 -14.46718 -14.20451 -13.87483 -13.28698 -13.07536 -12.57654 -12.32257 -12.06393 -11.77485 -11.40723 -11.27483 -11.06756 -10.71930 -10.58976 -10.40099 -9.90513 -9.69565 -9.59593 -9.34757 -9.16836 -8.69534 -8.55050 -8.39894 -6.14037 -4.17243 0.50902 0.98146 1.60619 1.77817 3.28334 3.32347 3.35117 3.41633 3.61881 3.66026 4.25699 4.38086 4.50496 4.80578 4.89263 4.95623 5.08224 5.23131 5.29273 5.50679 5.58096 5.79813 5.95780 6.14222 6.26145 6.31524 6.44184 6.65372 6.79812 7.44778 7.54476 7.70736 7.83480 7.89905 8.21669 8.51783 8.88436 9.47989 10.97472 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.003137 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.859216 B = 8924.312685 C = 9540.312766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.712 5.712 12 C 0.523 3.477 13 O -0.540 6.540 14 C -0.176 4.176 15 C -0.053 4.053 16 C 0.004 3.996 17 C -0.097 4.097 18 C 0.111 3.889 19 N -0.479 5.479 20 C 0.169 3.831 21 Cl -0.044 7.044 22 C -0.143 4.143 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.399 0.601 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -20.535 -1.459 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.360 5.360 12 C 0.310 3.690 13 O -0.420 6.420 14 C -0.198 4.198 15 C -0.073 4.073 16 C -0.005 4.005 17 C -0.117 4.117 18 C -0.044 4.044 19 N -0.191 5.191 20 C 0.004 3.996 21 Cl -0.015 7.015 22 C -0.164 4.164 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.180 0.820 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.607 -20.427 -1.630 21.003 hybrid contribution -0.929 1.028 0.455 1.459 sum 3.678 -19.399 -1.175 19.779 Atomic orbital electron populations 1.69944 1.06100 1.27057 1.50198 1.24993 0.94901 0.99436 0.94894 0.86567 0.79530 0.82588 0.78836 1.20067 1.21204 1.20077 1.21005 0.93209 0.90393 1.51636 0.92311 1.19315 0.94167 0.91120 0.97837 1.21749 0.96064 0.81414 1.00864 1.46340 1.10608 1.06657 1.72438 1.18528 0.87829 0.84619 0.78010 1.90860 1.13337 1.87492 1.50350 1.23322 1.00610 0.92638 1.03182 1.22199 0.91678 0.98269 0.95136 1.19154 0.93397 0.93823 0.94079 1.22183 0.97407 0.95707 0.96441 1.22419 0.88971 0.95151 0.97864 1.66806 1.39456 1.06556 1.06248 1.21319 0.88111 0.96027 0.94113 1.98385 1.59106 1.69484 1.74567 1.21783 0.91406 1.01621 1.01570 0.92741 0.95929 0.95969 0.92473 0.92428 0.76758 0.84327 0.83848 0.84733 0.82003 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 11 N -0.71 -11.34 5.55 -61.63 -0.34 -11.68 16 12 C 0.52 7.86 7.00 -12.87 -0.09 7.77 16 13 O -0.54 -9.87 12.46 5.22 0.07 -9.80 16 14 C -0.18 -1.81 9.96 -37.47 -0.37 -2.18 16 15 C -0.05 -0.49 9.84 -37.13 -0.37 -0.86 16 16 C 0.00 0.05 4.37 -104.75 -0.46 -0.41 16 17 C -0.10 -1.24 6.88 -38.96 -0.27 -1.51 16 18 C 0.11 1.46 11.17 -17.62 -0.20 1.26 16 19 N -0.48 -6.99 10.32 -10.45 -0.11 -7.09 16 20 C 0.17 2.27 7.27 -17.51 -0.13 2.15 16 21 Cl -0.04 -0.52 29.10 -51.86 -1.51 -2.03 16 22 C -0.14 -1.69 9.67 -38.91 -0.38 -2.06 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.40 5.39 8.45 -40.82 -0.35 5.04 16 29 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 31 H 0.13 1.62 7.52 -52.49 -0.39 1.22 16 32 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -32.10 309.80 -8.00 -40.10 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.66 Total: 0.98 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.83 Total: -6.27 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.29 Total: -43.77 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.10 -8.00 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492410934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.491 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds