Wall clock time and date at job start Tue Mar 31 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00100 * 2 1 4 4 H 1.48507 * 109.47120 * 239.99856 * 3 2 1 5 5 H 1.48500 * 109.47613 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47375 * 120.00092 * 3 2 1 7 7 C 1.37878 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99600 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47272 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47452 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00358 * 180.02562 * 11 10 9 13 13 O 1.21665 * 119.99785 * 359.97438 * 12 11 10 14 14 C 1.46648 * 120.00160 * 180.02562 * 12 11 10 15 15 C 1.34628 * 120.00173 * 173.25642 * 14 12 11 16 16 C 1.47412 * 119.99917 * 348.72655 * 15 14 12 17 17 C 1.40184 * 120.94365 * 312.28307 * 16 15 14 18 18 C 1.37936 * 119.00254 * 179.97438 * 17 16 15 19 19 N 1.31926 * 120.94255 * 0.02562 * 18 17 16 20 20 C 1.31954 * 122.09381 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 119.55147 * 180.02562 * 20 19 18 22 22 C 1.38198 * 120.89394 * 0.02562 * 20 19 18 23 23 H 0.97006 * 119.99852 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46782 * 60.00146 * 9 7 2 25 25 H 1.09002 * 109.47034 * 300.00350 * 9 7 2 26 26 H 1.09004 * 109.47104 * 59.99883 * 10 9 7 27 27 H 1.09002 * 109.47360 * 300.00129 * 10 9 7 28 28 H 0.97003 * 119.99284 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.00054 * 353.25787 * 14 12 11 30 30 H 1.08005 * 120.00445 * 168.72866 * 15 14 12 31 31 H 1.08000 * 120.49966 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.52818 * 180.27278 * 18 17 16 33 33 H 1.07990 * 120.52558 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5126 -4.9309 0.0033 12 6 2.1864 -6.0981 0.0047 13 8 3.4030 -6.0981 0.0051 14 6 1.4531 -7.3681 0.0047 15 6 2.1193 -8.5301 -0.1308 16 6 3.5396 -8.5237 -0.5255 17 6 3.9840 -7.7489 -1.6060 18 6 5.3220 -7.7724 -1.9403 19 7 6.1783 -8.5102 -1.2599 20 6 5.8041 -9.2544 -0.2365 21 17 6.9870 -10.1996 0.6127 22 6 4.4833 -9.2916 0.1684 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8920 26 1 2.8717 -3.6036 0.8927 27 1 2.8718 -3.6052 -0.8873 28 1 0.5425 -4.9307 0.0033 29 1 0.3786 -7.3712 0.1133 30 1 1.6133 -9.4670 0.0497 31 1 3.2893 -7.1419 -2.1676 32 1 5.6743 -7.1753 -2.7684 33 1 4.1835 -9.9031 1.0065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492410934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:39 Heat of formation + Delta-G solvation = -15.698852 kcal Electronic energy + Delta-G solvation = -18316.121603 eV Core-core repulsion = 15174.128094 eV Total energy + Delta-G solvation = -3141.993509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43353 -40.35525 -37.65827 -36.74986 -35.43198 -34.79268 -32.32315 -31.98274 -31.10703 -27.16805 -25.39431 -24.52611 -23.39520 -22.43299 -20.63216 -18.87994 -18.42769 -17.63546 -17.22440 -16.93603 -16.57101 -16.26391 -16.16446 -15.62954 -15.18872 -14.86132 -14.60787 -14.51624 -14.18473 -13.45541 -13.22845 -12.97147 -12.93657 -12.70640 -12.55031 -12.34731 -12.22821 -11.71889 -11.52996 -11.40131 -10.83295 -10.65066 -10.60666 -10.16560 -9.85017 -9.62971 -8.25331 -6.35585 -0.37812 0.03542 0.69582 0.83549 1.41139 1.42715 1.50831 2.30159 2.33771 2.49937 2.70351 3.09563 3.40650 3.64906 3.89768 3.99313 4.02361 4.21419 4.49241 4.49527 4.57196 4.62253 4.73828 4.85954 4.96052 5.15259 5.30096 5.39743 5.50170 5.53689 5.58385 5.78854 6.15777 6.69088 6.73708 6.77867 7.32670 7.33873 8.86145 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.003137 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.859216 B = 8924.312685 C = 9540.312766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.143 3.857 11 N -0.711 5.711 12 C 0.519 3.481 13 O -0.577 6.577 14 C -0.183 4.183 15 C -0.031 4.031 16 C -0.007 4.007 17 C -0.107 4.107 18 C 0.096 3.904 19 N -0.507 5.507 20 C 0.150 3.850 21 Cl -0.037 7.037 22 C -0.142 4.142 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.412 0.588 29 H 0.179 0.821 30 H 0.193 0.807 31 H 0.136 0.864 32 H 0.175 0.825 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -21.665 -1.071 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.019 3.981 11 N -0.361 5.361 12 C 0.309 3.691 13 O -0.459 6.459 14 C -0.203 4.203 15 C -0.050 4.050 16 C -0.016 4.016 17 C -0.127 4.127 18 C -0.059 4.059 19 N -0.219 5.219 20 C -0.014 4.014 21 Cl -0.009 7.009 22 C -0.162 4.162 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.248 0.752 29 H 0.196 0.804 30 H 0.210 0.790 31 H 0.154 0.846 32 H 0.192 0.808 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.820 -21.583 -1.244 21.953 hybrid contribution -0.648 1.313 0.328 1.500 sum 3.172 -20.270 -0.915 20.537 Atomic orbital electron populations 1.70042 1.07456 1.28069 1.50918 1.25835 0.95781 1.02976 0.94417 0.85548 0.78370 0.78353 0.79095 1.19350 1.20516 1.19495 1.21451 0.93512 0.92125 1.51658 0.92536 1.19116 0.94216 0.91716 0.96355 1.21147 0.94911 0.82476 0.99543 1.46133 1.11144 1.05621 1.73168 1.19345 0.87647 0.85644 0.76428 1.90853 1.15206 1.88090 1.51801 1.23320 1.02155 0.89887 1.04954 1.22653 0.89920 0.99852 0.92539 1.19579 0.95159 0.93164 0.93665 1.22308 0.97286 0.95962 0.97135 1.22714 0.89407 0.95394 0.98395 1.66789 1.40338 1.07545 1.07236 1.21647 0.89162 0.96346 0.94287 1.98379 1.59026 1.69206 1.74287 1.22089 0.90653 1.01510 1.01986 0.92506 0.97153 0.97407 0.94085 0.93528 0.75233 0.80393 0.79039 0.84571 0.80774 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.52 13.29 21.45 0.28 -53.23 16 2 C 0.01 0.49 5.46 84.65 0.46 0.96 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.30 9.11 25.60 0.23 -30.06 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.14 5.88 5.61 86.38 0.48 6.37 16 11 N -0.71 -22.12 5.55 -467.14 -2.59 -24.71 16 12 C 0.52 14.88 7.00 86.44 0.60 15.48 16 13 O -0.58 -20.82 12.46 -4.24 -0.05 -20.88 16 14 C -0.18 -3.10 9.96 23.64 0.24 -2.86 16 15 C -0.03 -0.44 9.84 23.86 0.23 -0.20 16 16 C -0.01 -0.16 4.37 -19.95 -0.09 -0.24 16 17 C -0.11 -2.65 6.88 22.67 0.16 -2.49 16 18 C 0.10 2.53 11.17 84.61 0.94 3.48 16 19 N -0.51 -14.84 10.32 -186.99 -1.93 -16.77 16 20 C 0.15 3.93 7.27 84.66 0.62 4.54 16 21 Cl -0.04 -0.86 29.10 -2.72 -0.08 -0.93 16 22 C -0.14 -3.07 9.67 22.70 0.22 -2.85 16 23 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.41 10.61 8.45 -92.71 -0.78 9.83 16 29 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 31 H 0.14 3.22 7.52 -2.91 -0.02 3.20 16 32 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 33 H 0.17 2.57 8.06 -2.92 -0.02 2.54 16 Total: -1.00 -70.41 309.80 2.26 -68.15 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.35 Total: 9.71 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.26 Total: -6.60 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.24 Total: -94.72 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.93 kcal Total: -70.41 2.26 -68.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492410934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.452 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds