Wall clock time and date at job start Tue Mar 31 2020 01:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47265 * 239.99918 * 3 2 1 5 5 H 1.48502 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47163 * 120.00087 * 3 2 1 7 7 C 1.38954 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99647 * 198.23577 * 7 2 1 9 9 N 1.37094 * 120.00217 * 18.24501 * 7 2 1 10 10 C 1.34779 * 119.99999 * 44.37322 * 9 7 2 11 11 O 1.21285 * 120.00074 * 359.72621 * 10 9 7 12 12 C 1.50702 * 119.99778 * 179.73017 * 10 9 7 13 13 C 1.50697 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.38167 * 120.42669 * 264.72461 * 13 12 10 15 15 N 1.31882 * 120.77873 * 179.68043 * 14 13 12 16 16 C 1.31913 * 121.75307 * 0.62278 * 15 14 13 17 17 C 1.38120 * 120.78083 * 359.66449 * 16 15 14 18 18 C 1.38773 * 120.42957 * 84.99361 * 13 12 10 19 19 Cl 1.73605 * 120.80529 * 359.97438 * 18 13 12 20 20 C 1.46504 * 119.99917 * 224.10254 * 9 7 2 21 21 C 1.53001 * 117.49632 * 3.49175 * 20 9 7 22 22 C 1.52994 * 117.49799 * 294.87245 * 20 9 7 23 23 H 0.96996 * 119.99861 * 354.92053 * 1 2 3 24 24 H 1.09007 * 109.46788 * 300.00006 * 12 10 9 25 25 H 1.08994 * 109.47399 * 59.99751 * 12 10 9 26 26 H 1.07998 * 119.61240 * 359.97438 * 14 13 12 27 27 H 1.08000 * 119.60420 * 179.67785 * 16 15 14 28 28 H 1.08001 * 120.42683 * 180.02562 * 17 16 15 29 29 H 1.08995 * 115.55121 * 149.20220 * 20 9 7 30 30 H 1.08996 * 117.50041 * 0.02562 * 21 20 9 31 31 H 1.09003 * 117.49403 * 145.02121 * 21 20 9 32 32 H 1.09000 * 117.50197 * 214.97943 * 22 20 9 33 33 H 1.09001 * 117.49804 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0482 -1.2268 0.2933 9 7 1.3750 -2.3610 -0.3706 10 6 0.5804 -2.3750 -1.4592 11 8 0.4221 -1.3623 -2.1075 12 6 -0.1115 -3.6490 -1.8707 13 6 -0.9322 -3.3974 -3.1093 14 6 -2.2772 -3.0977 -3.0085 15 7 -3.0006 -2.8701 -4.0874 16 6 -2.4798 -2.9302 -5.2979 17 6 -1.1436 -3.2299 -5.4783 18 6 -0.3482 -3.4694 -4.3661 19 17 1.3366 -3.8489 -4.5431 20 6 1.5661 -3.5843 0.4125 21 6 2.4188 -3.4862 1.6791 22 6 2.9691 -4.1939 0.4394 23 1 -0.4850 0.8367 0.0744 24 1 0.6342 -4.4164 -2.0790 25 1 -0.7634 -3.9852 -1.0645 26 1 -2.7405 -3.0444 -2.0344 27 1 -3.1055 -2.7427 -6.1579 28 1 -0.7230 -3.2772 -6.4719 29 1 0.7191 -4.2700 0.4275 30 1 2.8372 -2.5114 1.9299 31 1 2.1326 -4.1074 2.5278 32 1 3.0451 -5.2808 0.4724 33 1 3.7498 -3.6851 -0.1260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565959491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:44 Heat of formation + Delta-G solvation = 14.658933 kcal Electronic energy + Delta-G solvation = -19742.337552 eV Core-core repulsion = 16601.660456 eV Total energy + Delta-G solvation = -3140.677096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36556 -40.14795 -37.78757 -37.63953 -34.97432 -34.08781 -32.87679 -32.67323 -29.26917 -26.64361 -24.61076 -23.72961 -23.04850 -22.69243 -21.01066 -18.43754 -18.19330 -17.85491 -17.70851 -16.81541 -16.32383 -15.75485 -15.58988 -15.23248 -14.90403 -14.79459 -14.44505 -14.29257 -13.75033 -13.31782 -13.12622 -13.05670 -12.87915 -12.76258 -12.42977 -12.18043 -12.11182 -11.89406 -11.62771 -11.19161 -10.72764 -10.59881 -10.38850 -10.17607 -9.78376 -8.92848 -8.18333 -5.94901 0.04922 0.06295 0.98362 1.34530 1.42932 1.45738 2.26788 2.43977 2.66990 3.13494 3.19098 3.38769 3.46264 3.69025 3.78115 3.97000 4.13526 4.18774 4.30907 4.36280 4.43594 4.54966 4.63817 4.73848 4.81915 4.92229 5.08256 5.08859 5.31458 5.48741 5.52154 5.58571 6.22462 6.89946 7.06885 7.23943 7.74341 8.40730 8.89784 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.006983 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.348088 B = 4008.970399 C = 4660.677659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.353 4.353 8 H 0.074 0.926 9 N -0.445 5.445 10 C 0.482 3.518 11 O -0.577 6.577 12 C -0.088 4.088 13 C -0.106 4.106 14 C 0.111 3.889 15 N -0.501 5.501 16 C 0.101 3.899 17 C -0.163 4.163 18 C 0.004 3.996 19 Cl -0.053 7.053 20 C 0.044 3.956 21 C -0.170 4.170 22 C -0.182 4.182 23 H 0.257 0.743 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.163 0.837 27 H 0.200 0.800 28 H 0.172 0.828 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -11.760 -5.630 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.180 4.180 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.092 0.908 9 N -0.166 5.166 10 C 0.271 3.729 11 O -0.457 6.457 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.046 4.046 15 N -0.210 5.210 16 C -0.056 4.056 17 C -0.184 4.184 18 C -0.031 4.031 19 Cl -0.024 7.024 20 C -0.061 4.061 21 C -0.208 4.208 22 C -0.221 4.221 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.180 0.820 27 H 0.217 0.783 28 H 0.190 0.810 29 H 0.146 0.854 30 H 0.098 0.902 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.691 -10.940 -5.928 12.557 hybrid contribution 1.456 1.002 0.137 1.773 sum -0.235 -9.938 -5.790 11.504 Atomic orbital electron populations 1.69906 1.07705 1.27409 1.45211 1.25933 0.95463 1.02156 0.94481 0.85492 0.78251 0.78815 0.78650 1.21071 1.21485 1.18109 1.18970 0.94564 0.85220 1.49305 0.90838 1.42940 1.44045 1.07636 1.21941 1.20254 0.82502 0.89277 0.80850 1.90508 1.63845 1.36607 1.54788 1.20580 0.99356 0.97433 0.95457 1.20447 0.95710 1.00605 0.94151 1.22741 0.89772 0.93846 0.98210 1.67677 1.40083 1.13514 0.99676 1.23355 0.92717 0.94042 0.95475 1.22383 0.95039 1.01479 0.99451 1.21407 0.86367 1.00303 0.95040 1.98367 1.14269 1.92062 1.97709 1.22056 0.95032 0.90548 0.98500 1.23098 1.03639 1.02052 0.92003 1.23315 0.96905 1.00495 1.01370 0.93346 0.87312 0.87257 0.82001 0.78310 0.81013 0.85360 0.90233 0.86439 0.85750 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.34 11.74 21.66 0.25 -52.09 16 2 C 0.03 1.49 4.38 84.93 0.37 1.86 16 3 Si 0.96 46.20 29.59 68.60 2.03 48.23 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.35 -19.32 7.92 84.04 0.67 -18.66 16 8 H 0.07 3.93 7.26 -2.91 -0.02 3.91 16 9 N -0.44 -21.75 2.83 -613.13 -1.74 -23.49 16 10 C 0.48 23.76 6.97 87.66 0.61 24.38 16 11 O -0.58 -33.98 13.79 -3.04 -0.04 -34.02 16 12 C -0.09 -3.21 4.03 29.10 0.12 -3.09 16 13 C -0.11 -3.82 4.39 -19.75 -0.09 -3.90 16 14 C 0.11 3.89 10.84 84.67 0.92 4.81 16 15 N -0.50 -16.43 10.36 -195.90 -2.03 -18.46 16 16 C 0.10 2.66 11.18 84.65 0.95 3.60 16 17 C -0.16 -4.38 9.94 22.38 0.22 -4.15 16 18 C 0.00 0.12 6.37 22.54 0.14 0.26 16 19 Cl -0.05 -1.69 27.61 -2.72 -0.08 -1.77 16 20 C 0.04 1.62 5.88 44.99 0.26 1.88 16 21 C -0.17 -5.66 9.80 30.59 0.30 -5.36 16 22 C -0.18 -5.60 10.35 30.59 0.32 -5.28 16 23 H 0.26 15.17 8.32 -92.71 -0.77 14.39 16 24 H 0.11 3.52 7.20 -2.38 -0.02 3.51 16 25 H 0.11 3.51 7.48 -2.39 -0.02 3.49 16 26 H 0.16 5.38 8.06 -2.91 -0.02 5.35 16 27 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.13 4.01 6.96 -2.39 -0.02 3.99 16 30 H 0.08 3.10 6.73 -2.39 -0.02 3.08 16 31 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -73.72 301.82 4.32 -69.40 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.13 Total: 15.87 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.79 Total: -3.67 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -3.51 Total: -94.04 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.04 Total: -34.02 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -73.72 4.32 -69.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565959491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.058 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds