Wall clock time and date at job start Tue Mar 31 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39706 * 119.99633 * 2 1 4 4 C 1.39037 * 120.00097 * 121.68808 * 3 2 1 5 5 C 1.38206 * 120.22987 * 179.97438 * 4 3 2 6 6 C 1.38014 * 120.23467 * 0.02562 * 5 4 3 7 7 C 1.39633 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.43199 * 120.11751 * 179.97438 * 7 6 5 9 9 N 5.87474 * 98.22111 * 330.04835 * 2 1 3 10 10 C 1.38622 * 120.00193 * 301.66861 * 3 2 1 11 11 S 1.65595 * 120.00349 * 179.97438 * 2 1 3 12 12 O 1.42101 * 104.27495 * 31.93013 * 11 2 1 13 13 O 1.42102 * 104.27609 * 159.78260 * 11 2 1 14 14 C 1.81392 * 104.45384 * 275.85464 * 11 2 1 15 15 C 1.50700 * 109.47274 * 180.02562 * 14 11 2 16 16 H 1.08000 * 119.99963 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99984 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99774 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47630 * 89.99914 * 19 17 15 21 21 H 1.48509 * 109.46892 * 209.99700 * 19 17 15 22 22 H 1.48498 * 109.47499 * 329.99551 * 19 17 15 23 23 H 1.09009 * 109.46981 * 90.00498 * 1 2 3 24 24 H 1.09003 * 109.47016 * 209.99816 * 1 2 3 25 25 H 1.08995 * 109.47540 * 330.00360 * 1 2 3 26 26 H 1.08000 * 119.88527 * 359.97438 * 4 3 2 27 27 H 1.08007 * 119.88176 * 179.97438 * 5 4 3 28 28 H 1.08004 * 119.99987 * 180.02562 * 6 5 4 29 29 H 1.08001 * 120.11169 * 0.29884 * 10 3 2 30 30 H 1.09005 * 109.46993 * 300.00202 * 14 11 2 31 31 H 1.08999 * 109.47321 * 59.99537 * 14 11 2 32 32 H 0.97002 * 120.00020 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2099 0.0000 4 6 3.0587 1.4958 1.0246 5 6 3.7526 2.6911 1.0290 6 6 3.5612 3.6095 0.0167 7 6 2.6644 3.3324 -1.0170 8 6 2.4635 4.2837 -2.0683 9 7 2.3050 5.0378 -2.9029 10 6 1.9641 2.1253 -1.0217 11 16 2.2930 -1.4340 0.0006 12 8 1.4561 -2.3222 -0.7273 13 8 3.5874 -1.0915 -0.4754 14 6 2.3643 -1.9149 1.7482 15 6 3.1038 -3.2213 1.8800 16 1 3.4918 -3.7133 1.0004 17 6 3.2843 -3.7890 3.1235 18 7 2.8114 -3.1902 4.1946 19 14 4.2004 -5.4087 3.2868 20 1 5.6492 -5.1414 3.4730 21 1 3.6800 -6.1556 4.4601 22 1 4.0002 -6.2168 2.0571 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 3.2126 0.7814 1.8198 27 1 4.4465 2.9075 1.8279 28 1 4.1058 4.5422 0.0237 29 1 1.2657 1.9071 -1.8161 30 1 2.8851 -1.1440 2.3162 31 1 1.3517 -2.0295 2.1351 32 1 2.9386 -3.5893 5.0695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571852190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:52 Heat of formation + Delta-G solvation = -14.060088 kcal Electronic energy + Delta-G solvation = -19201.191412 eV Core-core repulsion = 16061.312672 eV Total energy + Delta-G solvation = -3139.878740 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76210 -36.86358 -36.36607 -35.55990 -35.12156 -33.46855 -31.44063 -30.07463 -29.16708 -26.13413 -24.18592 -23.49145 -22.25977 -19.83126 -17.91017 -17.24565 -16.48618 -16.40234 -16.11742 -15.88238 -15.18948 -14.50763 -14.36952 -14.12018 -13.94974 -13.52741 -13.23304 -12.87387 -12.73296 -12.51390 -12.31003 -12.25163 -11.91262 -11.53872 -11.49593 -11.32759 -11.28683 -11.11258 -10.97207 -10.70509 -10.00942 -9.87071 -9.17888 -9.05733 -8.80657 -8.38791 -6.43498 -4.55110 0.68070 0.97233 1.25956 2.53307 2.84598 3.15640 3.16603 3.22490 3.27584 3.72377 3.79289 4.15867 4.60525 4.69856 4.78813 4.90677 4.93806 5.06736 5.08954 5.34040 5.46686 5.57907 5.70303 5.84016 5.84843 6.09001 6.24070 6.26554 6.44465 6.57635 6.64495 7.03323 7.33137 7.34861 7.63138 8.46592 9.13737 10.67930 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.004818 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.262630 B = 5809.772033 C = 6202.361197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.966 5.966 3 C 0.172 3.828 4 C -0.100 4.100 5 C -0.097 4.097 6 C -0.082 4.082 7 C -0.022 4.022 8 C 0.263 3.737 9 N -0.426 5.426 10 C -0.080 4.080 11 S 2.567 3.433 12 O -0.968 6.968 13 O -0.963 6.963 14 C -0.413 4.413 15 C -0.538 4.538 16 H 0.070 0.930 17 C 0.079 3.921 18 N -0.877 5.877 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.266 1.266 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 10.503 -2.217 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.793 5.793 3 C 0.077 3.923 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.103 4.103 7 C -0.026 4.026 8 C -0.052 4.052 9 N -0.101 5.101 10 C -0.104 4.104 11 S 2.669 3.331 12 O -0.958 6.958 13 O -0.953 6.953 14 C -0.549 4.549 15 C -0.577 4.577 16 H 0.088 0.912 17 C -0.128 4.128 18 N -0.513 5.513 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.190 1.190 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.211 11.205 -4.157 12.154 hybrid contribution 0.251 -1.015 1.143 1.549 sum -1.960 10.190 -3.015 10.806 Atomic orbital electron populations 1.21550 0.77629 1.03582 1.02375 1.55943 1.15186 1.19411 1.88746 1.17114 0.94695 0.87020 0.93470 1.21750 0.95962 0.97655 0.96758 1.20942 0.99104 0.92827 0.98650 1.21133 0.96418 0.99915 0.92858 1.15765 1.01809 0.92096 0.92923 1.25692 0.93453 0.93074 0.93000 1.81233 1.08540 1.10119 1.10213 1.21172 0.99512 0.92372 0.97372 1.06727 0.73345 0.71888 0.81093 1.93498 1.68144 1.62694 1.71504 1.93512 1.39209 1.81796 1.80804 1.27773 1.06735 1.06706 1.13706 1.20310 1.38387 1.04209 0.94817 0.91170 1.24910 0.94679 0.98087 0.95121 1.69935 1.43523 1.39155 0.98652 0.86365 0.79978 0.82206 0.78425 1.19787 1.20539 1.19025 0.92309 0.90135 0.90868 0.84262 0.84180 0.84871 0.84742 0.89576 0.89538 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 9.95 59.84 0.60 1.74 16 2 N -0.97 -15.07 3.18 -65.43 -0.21 -15.28 16 3 C 0.17 2.45 4.81 -83.83 -0.40 2.05 16 4 C -0.10 -1.33 9.25 -39.30 -0.36 -1.70 16 5 C -0.10 -1.01 10.02 -39.68 -0.40 -1.40 16 6 C -0.08 -0.80 9.75 -39.14 -0.38 -1.18 16 7 C -0.02 -0.25 5.73 -106.96 -0.61 -0.86 16 8 C 0.26 3.21 15.33 -22.47 -0.34 2.87 16 9 N -0.43 -5.98 18.54 41.84 0.78 -5.21 16 10 C -0.08 -1.00 9.37 -38.95 -0.37 -1.37 16 11 S 2.57 52.16 5.00 -107.50 -0.54 51.62 16 12 O -0.97 -21.87 17.31 -57.54 -1.00 -22.87 16 13 O -0.96 -21.61 16.83 -57.54 -0.97 -22.58 16 14 C -0.41 -9.24 5.93 36.01 0.21 -9.03 16 15 C -0.54 -14.08 9.13 -34.44 -0.31 -14.40 16 16 H 0.07 1.82 7.71 -52.49 -0.40 1.42 16 17 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 18 N -0.88 -23.41 13.29 55.43 0.74 -22.67 16 19 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 24 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 25 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 26 H 0.14 1.90 6.61 -52.49 -0.35 1.56 16 27 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.09 1.85 6.69 -51.92 -0.35 1.51 16 31 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -32.27 305.51 -7.26 -39.54 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.18 Total: -0.87 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.47 Total: -21.31 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 1.30 Total: -43.16 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.96 Total: -45.45 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.54 Total: 51.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.27 -7.26 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571852190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.475 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds