Wall clock time and date at job start Tue Mar 31 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39706 * 119.99633 * 2 1 4 4 C 1.39037 * 120.00097 * 121.68808 * 3 2 1 5 5 C 1.38206 * 120.22987 * 179.97438 * 4 3 2 6 6 C 1.38014 * 120.23467 * 0.02562 * 5 4 3 7 7 C 1.39633 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.43199 * 120.11751 * 179.97438 * 7 6 5 9 9 N 5.87474 * 98.22111 * 330.04835 * 2 1 3 10 10 C 1.38622 * 120.00193 * 301.66861 * 3 2 1 11 11 S 1.65595 * 120.00349 * 179.97438 * 2 1 3 12 12 O 1.42101 * 104.27495 * 31.93013 * 11 2 1 13 13 O 1.42102 * 104.27609 * 159.78260 * 11 2 1 14 14 C 1.81392 * 104.45384 * 275.85464 * 11 2 1 15 15 C 1.50700 * 109.47274 * 180.02562 * 14 11 2 16 16 H 1.08000 * 119.99963 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99984 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99774 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47630 * 89.99914 * 19 17 15 21 21 H 1.48509 * 109.46892 * 209.99700 * 19 17 15 22 22 H 1.48498 * 109.47499 * 329.99551 * 19 17 15 23 23 H 1.09009 * 109.46981 * 90.00498 * 1 2 3 24 24 H 1.09003 * 109.47016 * 209.99816 * 1 2 3 25 25 H 1.08995 * 109.47540 * 330.00360 * 1 2 3 26 26 H 1.08000 * 119.88527 * 359.97438 * 4 3 2 27 27 H 1.08007 * 119.88176 * 179.97438 * 5 4 3 28 28 H 1.08004 * 119.99987 * 180.02562 * 6 5 4 29 29 H 1.08001 * 120.11169 * 0.29884 * 10 3 2 30 30 H 1.09005 * 109.46993 * 300.00202 * 14 11 2 31 31 H 1.08999 * 109.47321 * 59.99537 * 14 11 2 32 32 H 0.97002 * 120.00020 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2099 0.0000 4 6 3.0587 1.4958 1.0246 5 6 3.7526 2.6911 1.0290 6 6 3.5612 3.6095 0.0167 7 6 2.6644 3.3324 -1.0170 8 6 2.4635 4.2837 -2.0683 9 7 2.3050 5.0378 -2.9029 10 6 1.9641 2.1253 -1.0217 11 16 2.2930 -1.4340 0.0006 12 8 1.4561 -2.3222 -0.7273 13 8 3.5874 -1.0915 -0.4754 14 6 2.3643 -1.9149 1.7482 15 6 3.1038 -3.2213 1.8800 16 1 3.4918 -3.7133 1.0004 17 6 3.2843 -3.7890 3.1235 18 7 2.8114 -3.1902 4.1946 19 14 4.2004 -5.4087 3.2868 20 1 5.6492 -5.1414 3.4730 21 1 3.6800 -6.1556 4.4601 22 1 4.0002 -6.2168 2.0571 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 3.2126 0.7814 1.8198 27 1 4.4465 2.9075 1.8279 28 1 4.1058 4.5422 0.0237 29 1 1.2657 1.9071 -1.8161 30 1 2.8851 -1.1440 2.3162 31 1 1.3517 -2.0295 2.1351 32 1 2.9386 -3.5893 5.0695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571852190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:52 Heat of formation + Delta-G solvation = -35.351937 kcal Electronic energy + Delta-G solvation = -19202.114696 eV Core-core repulsion = 16061.312672 eV Total energy + Delta-G solvation = -3140.802024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73486 -38.09381 -37.89569 -36.92455 -36.54993 -35.40935 -32.38428 -31.09266 -30.99244 -27.20556 -25.67912 -24.86272 -23.27457 -20.99880 -19.39554 -18.89439 -18.00315 -17.60286 -17.43828 -17.10319 -16.55582 -16.07789 -15.87067 -15.12678 -14.88290 -14.61724 -14.46941 -14.24899 -14.03168 -13.91451 -13.75535 -13.43428 -13.30589 -13.07340 -12.99648 -12.90904 -12.72862 -12.55539 -12.41264 -12.30982 -11.78826 -11.35361 -10.76252 -10.59608 -9.98970 -9.44670 -8.40455 -6.58424 -0.61461 -0.24376 0.30602 1.40886 1.41120 1.52913 1.55001 1.78992 1.88844 2.32752 2.77328 2.83385 2.93640 2.97895 3.33031 3.75828 3.93652 4.08126 4.13020 4.42024 4.51012 4.65557 4.68876 4.72807 4.83583 4.90976 4.95710 5.22466 5.29441 5.34655 5.36330 5.60266 5.72701 5.97371 6.39521 6.50707 7.13550 8.71526 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.004818 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.262630 B = 5809.772033 C = 6202.361197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.959 5.959 3 C 0.142 3.858 4 C -0.119 4.119 5 C -0.091 4.091 6 C -0.063 4.063 7 C -0.023 4.023 8 C 0.285 3.715 9 N -0.458 5.458 10 C -0.080 4.080 11 S 2.600 3.400 12 O -0.994 6.994 13 O -0.986 6.986 14 C -0.424 4.424 15 C -0.569 4.569 16 H 0.062 0.938 17 C 0.033 3.967 18 N -0.903 5.903 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.265 1.265 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.171 0.829 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 11.760 -2.081 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.789 5.789 3 C 0.048 3.952 4 C -0.140 4.140 5 C -0.109 4.109 6 C -0.083 4.083 7 C -0.028 4.028 8 C -0.030 4.030 9 N -0.134 5.134 10 C -0.104 4.104 11 S 2.701 3.299 12 O -0.985 6.985 13 O -0.977 6.977 14 C -0.559 4.559 15 C -0.608 4.608 16 H 0.080 0.920 17 C -0.171 4.171 18 N -0.539 5.539 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.190 1.190 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.145 0.855 27 H 0.188 0.812 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.724 12.453 -4.007 13.195 hybrid contribution 0.077 -1.272 1.102 1.685 sum -1.647 11.181 -2.905 11.669 Atomic orbital electron populations 1.21872 0.75687 1.04942 1.03720 1.55392 1.16302 1.18537 1.88689 1.17299 0.96097 0.86833 0.94951 1.21902 0.96645 0.98884 0.96607 1.21273 0.98639 0.91494 0.99473 1.21518 0.94932 1.00668 0.91228 1.15796 1.02242 0.91507 0.93207 1.25660 0.92448 0.92425 0.92441 1.81268 1.09672 1.11284 1.11172 1.21221 0.99755 0.92382 0.96998 1.05405 0.72729 0.72331 0.79386 1.93454 1.68727 1.64766 1.71543 1.93463 1.41021 1.82527 1.80673 1.27811 1.06042 1.05556 1.16454 1.20708 1.39173 1.05983 0.94950 0.92006 1.25714 0.95372 1.01194 0.94865 1.69996 1.44329 1.40492 0.99081 0.85545 0.79240 0.78544 0.78628 1.18818 1.19379 1.18956 0.91019 0.90540 0.87836 0.85456 0.81199 0.81466 0.83842 0.89289 0.89805 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 9.95 127.77 1.27 3.18 16 2 N -0.96 -29.50 3.18 -360.93 -1.15 -30.64 16 3 C 0.14 3.90 4.81 38.17 0.18 4.08 16 4 C -0.12 -3.03 9.25 22.45 0.21 -2.82 16 5 C -0.09 -1.62 10.02 22.21 0.22 -1.40 16 6 C -0.06 -0.99 9.75 22.55 0.22 -0.77 16 7 C -0.02 -0.46 5.73 -21.38 -0.12 -0.59 16 8 C 0.28 6.30 15.33 88.33 1.35 7.65 16 9 N -0.46 -12.09 18.54 19.00 0.35 -11.73 16 10 C -0.08 -1.84 9.37 22.68 0.21 -1.63 16 11 S 2.60 107.05 5.00 -56.49 -0.28 106.77 16 12 O -0.99 -45.55 17.31 -127.65 -2.21 -47.76 16 13 O -0.99 -44.72 16.83 -127.65 -2.15 -46.86 16 14 C -0.42 -19.47 5.93 71.24 0.42 -19.04 16 15 C -0.57 -30.44 9.13 25.60 0.23 -30.20 16 16 H 0.06 3.30 7.71 -2.91 -0.02 3.28 16 17 C 0.03 1.72 5.46 84.66 0.46 2.18 16 18 N -0.90 -48.56 13.29 21.45 0.28 -48.27 16 19 Si 0.96 40.92 29.54 68.60 2.03 42.95 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.08 1.86 7.94 -2.39 -0.02 1.84 16 25 H 0.10 1.81 8.05 -2.39 -0.02 1.79 16 26 H 0.13 3.50 6.61 -2.91 -0.02 3.48 16 27 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.09 3.96 6.69 -2.39 -0.02 3.94 16 31 H 0.08 3.81 8.14 -2.39 -0.02 3.79 16 32 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -69.39 305.51 2.69 -66.70 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.15 Total: 8.22 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.67 Total: -39.36 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -0.51 Total: -90.65 kcal Atomic # 8 Polarization: -90.27 SS G_CDS: -4.36 Total: -94.62 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 107.05 SS G_CDS: -0.28 Total: 106.77 kcal Total: -69.39 2.69 -66.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571852190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.352 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds