Wall clock time and date at job start Tue Mar 31 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.47201 * 109.47087 * 119.99922 * 2 1 3 5 5 N 2.60802 * 109.46983 * 119.99757 * 2 1 3 6 6 N 1.46495 * 109.47379 * 239.99902 * 2 1 3 7 7 S 1.65606 * 120.00104 * 95.00033 * 6 2 1 8 8 O 1.42095 * 106.39828 * 311.45796 * 7 6 2 9 9 O 1.42099 * 106.40039 * 178.54185 * 7 6 2 10 10 C 1.76196 * 107.21539 * 65.00195 * 7 6 2 11 11 C 1.38661 * 119.87204 * 269.97491 * 10 7 6 12 12 C 1.38617 * 120.49583 * 180.02562 * 11 10 7 13 13 C 1.37635 * 120.25342 * 0.02562 * 12 11 10 14 14 C 1.40700 * 119.74061 * 0.02562 * 13 12 11 15 15 C 1.41398 * 120.24232 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99853 * 335.57949 * 15 14 13 17 17 C 1.39945 * 119.99944 * 155.57438 * 15 14 13 18 18 N 1.30826 * 120.00259 * 341.92569 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 161.92338 * 17 15 14 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00303 * 19 17 15 22 22 H 1.48500 * 109.46961 * 240.00232 * 19 17 15 23 23 C 1.37599 * 119.87557 * 90.00268 * 10 7 6 24 24 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47561 * 300.00040 * 1 2 3 26 26 H 1.09000 * 109.47032 * 60.00457 * 1 2 3 27 27 H 0.97007 * 119.99854 * 275.00293 * 6 2 1 28 28 H 1.07988 * 119.75201 * 0.02562 * 11 10 7 29 29 H 1.08003 * 119.86873 * 179.97438 * 12 11 10 30 30 H 1.07999 * 120.13160 * 180.02562 * 13 12 11 31 31 H 0.96997 * 120.00151 * 180.02562 * 18 17 15 32 32 H 1.07990 * 120.12801 * 0.25159 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1295 6 7 2.0184 -0.6906 -1.1961 7 16 2.4123 0.1772 -2.5505 8 8 1.3247 1.0592 -2.7922 9 8 2.8777 -0.7635 -3.5084 10 6 3.7928 1.1909 -2.1371 11 6 3.5869 2.4653 -1.6310 12 6 4.6636 3.2740 -1.3019 13 6 5.9510 2.8191 -1.4752 14 6 6.1718 1.5281 -1.9890 15 6 7.4900 1.0498 -2.1708 16 1 8.3039 1.7472 -2.3033 17 6 7.7399 -0.3271 -2.1791 18 7 6.8588 -1.1549 -1.6790 19 14 9.3314 -0.9832 -2.9044 20 1 10.1534 0.1497 -3.4003 21 1 10.0850 -1.7205 -1.8586 22 1 9.0212 -1.9004 -4.0303 23 6 5.0712 0.7152 -2.3182 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.1110 -1.6562 -1.1948 28 1 2.5802 2.8306 -1.4921 29 1 4.4915 4.2652 -0.9088 30 1 6.7884 3.4507 -1.2178 31 1 7.0322 -2.1092 -1.6844 32 1 5.2293 -0.2760 -2.7167 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589587359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:13 Heat of formation + Delta-G solvation = -33.443175 kcal Electronic energy + Delta-G solvation = -19535.366630 eV Core-core repulsion = 16394.647376 eV Total energy + Delta-G solvation = -3140.719254 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.75678 -37.59208 -36.65259 -35.35640 -34.99560 -33.88925 -30.34482 -29.95427 -29.65733 -25.55810 -24.26375 -21.91079 -21.23166 -19.32237 -18.58370 -17.89774 -16.99418 -16.16982 -15.49794 -15.10283 -14.85902 -14.62393 -14.35480 -13.53866 -13.38458 -13.27854 -12.90110 -12.74185 -12.68552 -12.02531 -11.96145 -11.64286 -11.60600 -11.55736 -11.42464 -11.31918 -11.24202 -11.17324 -10.85769 -10.65972 -9.96784 -9.95677 -9.42415 -9.29563 -8.19217 -7.70642 -7.00405 -4.58487 0.90412 2.09448 2.61490 2.65940 2.78654 2.99059 3.03203 3.05164 3.59280 3.77472 3.79978 4.19788 4.39484 4.81764 4.90274 5.02687 5.26260 5.37638 5.63595 5.91108 5.96653 6.07569 6.17157 6.45253 6.76078 6.77413 6.98357 7.04907 7.15563 7.37324 7.51955 7.57543 7.71244 7.94070 8.27423 8.61050 8.64805 9.96503 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.006335 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.867332 B = 4418.845753 C = 4662.519241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.256 3.744 3 H 0.129 0.871 4 C 0.205 3.795 5 N -0.414 5.414 6 N -1.112 6.112 7 S 2.690 3.310 8 O -0.968 6.968 9 O -0.962 6.962 10 C -0.645 4.645 11 C -0.167 4.167 12 C -0.103 4.103 13 C -0.187 4.187 14 C 0.090 3.910 15 C -0.456 4.456 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.790 5.790 19 Si 0.912 3.088 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.268 1.268 23 C -0.055 4.055 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.420 0.580 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.286 0.714 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 0.841 1.443 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.145 3.855 3 H 0.146 0.854 4 C -0.115 4.115 5 N -0.091 5.091 6 N -0.869 5.869 7 S 2.785 3.215 8 O -0.958 6.958 9 O -0.952 6.952 10 C -0.737 4.737 11 C -0.189 4.189 12 C -0.123 4.123 13 C -0.207 4.207 14 C 0.087 3.913 15 C -0.485 4.485 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.414 5.414 19 Si 0.736 3.264 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.193 1.193 23 C -0.076 4.076 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.254 0.746 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.219 -0.101 2.071 8.476 hybrid contribution 1.364 -0.299 -0.058 1.397 sum -6.855 -0.400 2.013 7.156 Atomic orbital electron populations 1.22341 0.91774 1.03938 1.04711 1.18081 0.95127 0.95401 0.76883 0.85403 1.29207 0.93374 0.94254 0.94699 1.81185 1.08063 1.08401 1.11455 1.55829 1.82555 1.19875 1.28642 1.01771 0.74272 0.73334 0.72073 1.93522 1.52979 1.66005 1.83305 1.93569 1.82181 1.62482 1.56977 1.29867 1.14576 1.09703 1.19557 1.20019 0.97793 0.93506 1.07534 1.20637 0.93253 0.97891 1.00472 1.21233 0.95390 0.98318 1.05763 1.17712 0.93434 0.91137 0.89059 1.19660 0.93944 0.91862 1.43029 0.89796 1.25983 0.98997 0.97044 0.92543 1.69725 1.35333 1.05134 1.31226 0.86184 0.81028 0.79592 0.79593 1.18214 1.19810 1.19290 1.21242 0.89607 1.00451 0.96267 0.91277 0.90556 0.88818 0.74575 0.87354 0.88349 0.88237 0.90249 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.47 37.16 0.35 -1.19 16 2 C 0.26 3.12 3.22 -70.72 -0.23 2.89 16 3 H 0.13 1.48 7.23 -51.93 -0.38 1.11 16 4 C 0.21 2.91 14.89 -20.76 -0.31 2.60 16 5 N -0.41 -6.90 18.54 42.15 0.78 -6.12 16 6 N -1.11 -15.50 5.45 -7.31 -0.04 -15.54 16 7 S 2.69 48.04 5.65 -107.50 -0.61 47.43 16 8 O -0.97 -17.51 16.53 -57.17 -0.94 -18.46 16 9 O -0.96 -20.12 17.26 -57.17 -0.99 -21.11 16 10 C -0.64 -13.63 5.81 -39.66 -0.23 -13.86 16 11 C -0.17 -3.33 8.91 -39.29 -0.35 -3.68 16 12 C -0.10 -2.10 10.02 -39.66 -0.40 -2.50 16 13 C -0.19 -4.23 9.80 -38.87 -0.38 -4.61 16 14 C 0.09 2.27 5.58 -106.82 -0.60 1.67 16 15 C -0.46 -11.45 9.05 -37.74 -0.34 -11.79 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 18 N -0.79 -19.53 10.97 55.55 0.61 -18.92 16 19 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.05 -1.33 8.16 -38.87 -0.32 -1.65 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.90 7.64 -51.93 -0.40 0.50 16 27 H 0.42 5.16 8.81 -34.48 -0.30 4.86 16 28 H 0.11 1.84 7.60 -52.49 -0.40 1.44 16 29 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 30 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 32 H 0.14 3.51 5.71 -52.49 -0.30 3.21 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -30.41 300.94 -7.59 -38.00 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.01 Total: 7.63 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -2.89 Total: -30.44 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 1.35 Total: -40.58 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.93 Total: -39.57 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.61 Total: 47.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.41 -7.59 -38.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589587359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.554 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds