Wall clock time and date at job start Tue Mar 31 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.47201 * 109.47087 * 119.99922 * 2 1 3 5 5 N 2.60802 * 109.46983 * 119.99757 * 2 1 3 6 6 N 1.46495 * 109.47379 * 239.99902 * 2 1 3 7 7 S 1.65606 * 120.00104 * 95.00033 * 6 2 1 8 8 O 1.42095 * 106.39828 * 311.45796 * 7 6 2 9 9 O 1.42099 * 106.40039 * 178.54185 * 7 6 2 10 10 C 1.76196 * 107.21539 * 65.00195 * 7 6 2 11 11 C 1.38661 * 119.87204 * 269.97491 * 10 7 6 12 12 C 1.38617 * 120.49583 * 180.02562 * 11 10 7 13 13 C 1.37635 * 120.25342 * 0.02562 * 12 11 10 14 14 C 1.40700 * 119.74061 * 0.02562 * 13 12 11 15 15 C 1.41398 * 120.24232 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99853 * 335.57949 * 15 14 13 17 17 C 1.39945 * 119.99944 * 155.57438 * 15 14 13 18 18 N 1.30826 * 120.00259 * 341.92569 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 161.92338 * 17 15 14 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00303 * 19 17 15 22 22 H 1.48500 * 109.46961 * 240.00232 * 19 17 15 23 23 C 1.37599 * 119.87557 * 90.00268 * 10 7 6 24 24 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47561 * 300.00040 * 1 2 3 26 26 H 1.09000 * 109.47032 * 60.00457 * 1 2 3 27 27 H 0.97007 * 119.99854 * 275.00293 * 6 2 1 28 28 H 1.07988 * 119.75201 * 0.02562 * 11 10 7 29 29 H 1.08003 * 119.86873 * 179.97438 * 12 11 10 30 30 H 1.07999 * 120.13160 * 180.02562 * 13 12 11 31 31 H 0.96997 * 120.00151 * 180.02562 * 18 17 15 32 32 H 1.07990 * 120.12801 * 0.25159 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1295 6 7 2.0184 -0.6906 -1.1961 7 16 2.4123 0.1772 -2.5505 8 8 1.3247 1.0592 -2.7922 9 8 2.8777 -0.7635 -3.5084 10 6 3.7928 1.1909 -2.1371 11 6 3.5869 2.4653 -1.6310 12 6 4.6636 3.2740 -1.3019 13 6 5.9510 2.8191 -1.4752 14 6 6.1718 1.5281 -1.9890 15 6 7.4900 1.0498 -2.1708 16 1 8.3039 1.7472 -2.3033 17 6 7.7399 -0.3271 -2.1791 18 7 6.8588 -1.1549 -1.6790 19 14 9.3314 -0.9832 -2.9044 20 1 10.1534 0.1497 -3.4003 21 1 10.0850 -1.7205 -1.8586 22 1 9.0212 -1.9004 -4.0303 23 6 5.0712 0.7152 -2.3182 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.1110 -1.6562 -1.1948 28 1 2.5802 2.8306 -1.4921 29 1 4.4915 4.2652 -0.9088 30 1 6.7884 3.4507 -1.2178 31 1 7.0322 -2.1092 -1.6844 32 1 5.2293 -0.2760 -2.7167 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589587359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:13 Heat of formation + Delta-G solvation = -54.679694 kcal Electronic energy + Delta-G solvation = -19536.287514 eV Core-core repulsion = 16394.647376 eV Total energy + Delta-G solvation = -3141.640139 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.41737 -38.79440 -38.14345 -36.87910 -36.18084 -35.63652 -32.06904 -31.37174 -30.94190 -27.33540 -25.21030 -23.57273 -22.94584 -20.64458 -19.88563 -19.51465 -18.40381 -17.84152 -16.78345 -16.68235 -16.50042 -16.01785 -15.44831 -15.21736 -14.99322 -14.43274 -14.39568 -14.03845 -13.73015 -13.67964 -13.24394 -13.15787 -13.06719 -12.98752 -12.87864 -12.83895 -12.60240 -12.58326 -12.33647 -12.23401 -11.64025 -11.38035 -11.16031 -10.70874 -9.89485 -9.45491 -8.75916 -6.43327 -0.53891 0.40567 0.93312 1.35615 1.41650 1.45580 1.50492 1.65982 2.15613 2.27790 2.52985 2.68642 2.87827 3.48821 3.54086 3.90984 4.09007 4.31258 4.41521 4.58450 4.74232 4.94622 5.02346 5.06520 5.11007 5.24386 5.39750 5.43912 5.63231 5.85507 5.90840 5.95297 6.22479 6.39509 6.47219 6.81788 6.86975 8.23217 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.006335 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.867332 B = 4418.845753 C = 4662.519241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.250 3.750 3 H 0.140 0.860 4 C 0.227 3.773 5 N -0.460 5.460 6 N -1.103 6.103 7 S 2.723 3.277 8 O -0.962 6.962 9 O -0.994 6.994 10 C -0.656 4.656 11 C -0.154 4.154 12 C -0.107 4.107 13 C -0.197 4.197 14 C 0.055 3.945 15 C -0.495 4.495 16 H 0.081 0.919 17 C 0.033 3.967 18 N -0.823 5.823 19 Si 0.978 3.022 20 H -0.255 1.255 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.088 4.088 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.429 0.571 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.290 0.710 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 1.832 1.786 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.140 3.860 3 H 0.157 0.843 4 C -0.092 4.092 5 N -0.137 5.137 6 N -0.863 5.863 7 S 2.815 3.185 8 O -0.952 6.952 9 O -0.985 6.985 10 C -0.745 4.745 11 C -0.175 4.175 12 C -0.126 4.126 13 C -0.217 4.217 14 C 0.052 3.948 15 C -0.524 4.524 16 H 0.099 0.901 17 C -0.182 4.182 18 N -0.449 5.449 19 Si 0.799 3.201 20 H -0.178 1.178 21 H -0.190 1.190 22 H -0.190 1.190 23 C -0.109 4.109 24 H 0.098 0.902 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.265 0.735 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.907 0.922 2.423 10.241 hybrid contribution 1.694 -0.480 -0.104 1.764 sum -8.213 0.442 2.319 8.546 Atomic orbital electron populations 1.22385 0.88778 1.05231 1.06029 1.18545 0.97276 0.95219 0.74981 0.84275 1.29534 0.92077 0.93203 0.94433 1.81215 1.09585 1.09849 1.13055 1.55522 1.81977 1.20241 1.28572 1.00852 0.73075 0.72557 0.72013 1.93523 1.51880 1.66209 1.83615 1.93527 1.82630 1.63266 1.59032 1.30408 1.14780 1.11048 1.18298 1.20610 0.99648 0.92552 1.04684 1.21112 0.92238 0.99667 0.99536 1.21527 0.97152 0.97635 1.05385 1.18102 0.93960 0.92603 0.90163 1.19877 0.94296 0.92779 1.45487 0.90059 1.26761 1.02130 0.96918 0.92408 1.69781 1.37154 1.05439 1.32523 0.85206 0.77203 0.78884 0.78821 1.17808 1.19010 1.19050 1.21079 0.91045 1.00088 0.98723 0.90171 0.88069 0.88583 0.73505 0.83469 0.84344 0.87392 0.89891 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.47 71.98 0.68 -1.72 16 2 C 0.25 5.37 3.22 43.19 0.14 5.51 16 3 H 0.14 2.72 7.23 -2.39 -0.02 2.70 16 4 C 0.23 6.06 14.89 89.44 1.33 7.39 16 5 N -0.46 -14.92 18.54 20.01 0.37 -14.55 16 6 N -1.10 -28.64 5.45 -177.03 -0.96 -29.60 16 7 S 2.72 92.99 5.65 -56.49 -0.32 92.68 16 8 O -0.96 -31.78 16.53 -128.00 -2.12 -33.89 16 9 O -0.99 -41.52 17.26 -128.00 -2.21 -43.73 16 10 C -0.66 -27.12 5.81 22.22 0.13 -26.99 16 11 C -0.15 -5.69 8.91 22.46 0.20 -5.49 16 12 C -0.11 -4.06 10.02 22.22 0.22 -3.84 16 13 C -0.20 -8.87 9.80 22.73 0.22 -8.65 16 14 C 0.05 2.84 5.58 -21.29 -0.12 2.72 16 15 C -0.50 -25.88 9.05 23.46 0.21 -25.67 16 16 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 17 C 0.03 1.65 5.14 85.26 0.44 2.08 16 18 N -0.82 -42.40 10.97 21.83 0.24 -42.16 16 19 Si 0.98 37.99 29.60 68.60 2.03 40.02 16 20 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.09 -4.42 8.16 22.73 0.19 -4.24 16 24 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.44 7.64 -2.39 -0.02 1.42 16 27 H 0.43 9.96 8.81 -96.73 -0.85 9.11 16 28 H 0.15 4.25 7.60 -2.92 -0.02 4.23 16 29 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 30 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 32 H 0.11 6.15 5.71 -2.92 -0.02 6.14 16 Total: -1.00 -67.46 300.94 0.99 -66.47 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.32 Total: 23.67 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 3.64 Total: -58.90 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -0.35 Total: -86.31 kcal Atomic # 8 Polarization: -73.30 SS G_CDS: -4.33 Total: -77.63 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 92.99 SS G_CDS: -0.32 Total: 92.68 kcal Total: -67.46 0.99 -66.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589587359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.793 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds