Wall clock time and date at job start Tue Mar 31 2020 01:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00107 * 2 1 4 4 H 1.48504 * 109.47321 * 270.00334 * 3 2 1 5 5 H 1.48501 * 109.46955 * 30.00451 * 3 2 1 6 6 H 1.48501 * 109.47233 * 150.00093 * 3 2 1 7 7 C 1.37873 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00031 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00011 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47117 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.46892 * 111.00232 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47013 * 179.97438 * 12 11 10 14 14 C 1.33989 * 124.91816 * 90.00194 * 13 12 11 15 15 C 1.46668 * 106.09980 * 179.73525 * 14 13 12 16 16 C 1.39507 * 134.65814 * 180.26053 * 15 14 13 17 17 C 1.38388 * 117.98209 * 179.97438 * 16 15 14 18 18 Cl 1.73603 * 120.35910 * 180.02562 * 17 16 15 19 19 C 1.38713 * 119.28408 * 0.02562 * 17 16 15 20 20 N 1.31641 * 121.57680 * 359.97438 * 19 17 16 21 21 C 1.32499 * 121.73379 * 0.04615 * 20 19 17 22 22 O 1.34460 * 124.92052 * 270.19611 * 13 12 11 23 23 H 0.97007 * 119.99735 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46674 * 60.00478 * 9 7 2 25 25 H 1.08996 * 109.47356 * 300.00230 * 9 7 2 26 26 H 1.08996 * 109.47184 * 60.00142 * 10 9 7 27 27 H 1.09009 * 109.47256 * 300.00260 * 10 9 7 28 28 H 1.00897 * 110.99585 * 303.95751 * 11 10 9 29 29 H 1.09000 * 109.47035 * 60.00074 * 12 11 10 30 30 H 1.08996 * 109.47753 * 300.00153 * 12 11 10 31 31 H 1.08002 * 126.95289 * 0.02562 * 14 13 12 32 32 H 1.08002 * 121.00917 * 0.02575 * 16 15 14 33 33 H 1.07998 * 119.21296 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4906 -2.6365 -0.0022 12 6 6.0170 -4.0079 -0.0027 13 6 7.5235 -3.9677 -0.0033 14 6 8.2906 -3.9475 1.0951 15 6 9.6784 -3.9168 0.6215 16 6 10.9266 -3.8913 1.2440 17 6 12.0527 -3.8661 0.4400 18 17 13.6368 -3.8342 1.1496 19 6 11.9021 -3.8667 -0.9389 20 7 10.7127 -3.8911 -1.5024 21 6 9.6007 -3.9154 -0.7823 22 8 8.2924 -3.9431 -1.1061 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8746 -0.6799 -0.8911 26 1 3.6579 -3.1497 -0.8924 27 1 3.6585 -3.1510 0.8875 28 1 5.8522 -2.1097 -0.7831 29 1 5.6675 -4.5309 -0.8929 30 1 5.6675 -4.5317 0.8870 31 1 7.9551 -3.9571 2.1216 32 1 11.0115 -3.8919 2.3207 33 1 12.7817 -3.8467 -1.5652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590647695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:48 Heat of formation + Delta-G solvation = 36.040594 kcal Electronic energy + Delta-G solvation = -18004.398892 eV Core-core repulsion = 14864.648974 eV Total energy + Delta-G solvation = -3139.749918 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.95168 -39.46486 -37.00748 -36.40826 -33.94339 -33.06182 -31.62421 -31.07974 -29.30265 -26.32666 -24.18694 -23.53850 -22.55148 -21.57935 -20.51326 -18.52161 -17.37352 -16.96025 -16.85653 -16.69537 -15.65699 -15.03177 -14.51855 -14.15260 -14.09673 -13.75373 -13.61547 -13.38947 -13.24279 -12.75115 -12.44078 -12.29897 -12.18366 -11.68010 -11.44561 -11.08937 -11.05638 -10.17793 -10.02092 -9.94020 -9.86630 -9.29859 -9.19033 -8.77237 -8.57974 -8.21297 -6.08699 -4.07885 0.31263 0.52705 1.48753 1.92517 2.01324 3.16472 3.29854 3.37629 3.42823 3.87923 3.96492 4.22256 4.33426 4.42676 4.55139 4.68055 4.89793 5.12182 5.14783 5.25843 5.37051 5.39897 5.53020 5.78801 5.96983 6.01843 6.09781 6.63741 6.67583 6.92821 7.25470 7.26755 7.40359 7.55366 7.77063 8.46906 8.94552 9.53299 11.04392 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033863 B = 0.002722 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.674783 B =10282.603171 C =10595.230554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.690 5.690 12 C 0.131 3.869 13 C 0.062 3.938 14 C -0.180 4.180 15 C -0.162 4.162 16 C -0.015 4.015 17 C -0.112 4.112 18 Cl -0.049 7.049 19 C 0.154 3.846 20 N -0.455 5.455 21 C 0.260 3.740 22 O -0.179 6.179 23 H 0.264 0.736 24 H 0.027 0.973 25 H 0.010 0.990 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.342 0.658 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.672 -10.134 2.240 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.322 5.322 12 C 0.002 3.998 13 C 0.014 3.986 14 C -0.200 4.200 15 C -0.165 4.165 16 C -0.042 4.042 17 C -0.141 4.141 18 Cl -0.020 7.020 19 C -0.010 4.010 20 N -0.172 5.172 21 C 0.084 3.916 22 O -0.076 6.076 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.160 0.840 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 25.385 -9.954 1.806 27.327 hybrid contribution 0.445 0.695 0.106 0.832 sum 25.830 -9.259 1.912 27.506 Atomic orbital electron populations 1.69911 1.06324 1.27009 1.50847 1.25001 0.94739 0.99235 0.94384 0.86758 0.80476 0.83432 0.78532 1.20345 1.21372 1.18762 1.21029 0.89192 0.94591 1.51386 0.91004 1.19554 0.96805 0.91479 0.96952 1.22042 0.82615 1.00720 1.00072 1.60736 1.10751 1.10394 1.50327 1.20617 0.82401 0.93404 1.03403 1.22652 0.93793 0.99522 0.82630 1.22168 0.88759 1.08867 1.00221 1.20623 0.94914 1.06570 0.94425 1.20858 0.88517 0.93833 1.00959 1.21769 0.87762 1.10029 0.94528 1.98387 1.22876 1.97028 1.83734 1.22605 0.93413 0.94281 0.90652 1.66469 0.95327 1.15819 1.39541 1.19596 0.84588 0.98879 0.88579 1.83965 1.13190 1.75721 1.34772 0.92650 0.95496 0.97161 0.95345 0.91135 0.84025 0.92835 0.87072 0.81324 0.83091 0.80444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 10 C 0.07 1.35 5.62 -3.82 -0.02 1.33 16 11 N -0.69 -10.70 6.49 -115.06 -0.75 -11.44 16 12 C 0.13 1.59 6.19 -4.98 -0.03 1.56 16 13 C 0.06 0.77 6.74 -35.80 -0.24 0.53 16 14 C -0.18 -2.00 11.01 -37.67 -0.41 -2.41 16 15 C -0.16 -1.86 6.41 -105.14 -0.67 -2.54 16 16 C -0.02 -0.14 10.02 -39.05 -0.39 -0.53 16 17 C -0.11 -0.98 6.34 -39.35 -0.25 -1.23 16 18 Cl -0.05 -0.36 28.99 -51.86 -1.50 -1.86 16 19 C 0.15 1.44 10.95 -17.46 -0.19 1.25 16 20 N -0.46 -5.72 10.38 -12.95 -0.13 -5.86 16 21 C 0.26 3.48 8.58 -16.38 -0.14 3.34 16 22 O -0.18 -2.51 10.57 3.88 0.04 -2.47 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 25 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.34 5.29 8.72 -39.29 -0.34 4.94 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -31.38 306.44 -8.18 -39.56 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.66 Total: -0.56 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.91 Total: -12.15 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.11 Total: -44.09 kcal Atomic # 8 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.38 -8.18 -39.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590647695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.600 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds