Wall clock time and date at job start Tue Mar 31 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47175 * 240.00284 * 3 2 1 5 5 H 1.48499 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46894 * 120.00297 * 3 2 1 7 7 C 1.37882 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99454 * 359.97438 * 7 2 1 10 10 C 1.53497 * 114.20476 * 179.97438 * 9 7 2 11 11 N 1.47066 * 87.98677 * 220.14609 * 10 9 7 12 12 C 1.34772 * 136.05588 * 207.08052 * 11 10 9 13 13 O 1.21594 * 120.00261 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99711 * 180.02562 * 12 11 10 15 15 C 1.40007 * 119.99730 * 185.47905 * 14 12 11 16 16 C 1.38847 * 120.07620 * 24.78225 * 15 14 12 17 17 C 1.38115 * 119.94361 * 179.74415 * 16 15 14 18 18 C 1.38289 * 120.09173 * 0.52618 * 17 16 15 19 19 C 1.38268 * 120.15003 * 359.74623 * 18 17 16 20 20 C 1.38225 * 120.05267 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.04475 * 180.02562 * 20 19 18 22 22 C 1.47067 * 87.88180 * 27.34208 * 11 10 9 23 23 H 0.97000 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.09000 * 113.28658 * 313.06295 * 9 7 2 25 25 H 1.09004 * 113.46555 * 105.36473 * 10 9 7 26 26 H 1.09003 * 113.51967 * 334.94178 * 10 9 7 27 27 H 0.96995 * 120.00128 * 5.76154 * 14 12 11 28 28 H 1.08002 * 120.02122 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.95359 * 180.27325 * 17 16 15 30 30 H 1.07999 * 119.93031 * 179.76848 * 18 17 16 31 31 H 1.08001 * 119.97274 * 180.02562 * 19 18 17 32 32 H 1.09003 * 113.46679 * 87.43578 * 22 11 10 33 33 H 1.08997 * 113.46853 * 217.87338 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0018 11 7 1.2065 -4.3590 -0.9489 12 6 0.8310 -5.6134 -1.2679 13 8 1.3289 -6.5619 -0.6927 14 7 -0.0966 -5.8164 -2.2244 15 6 -0.5707 -7.1094 -2.4764 16 6 -0.5181 -8.0762 -1.4812 17 6 -0.9914 -9.3494 -1.7311 18 6 -1.5076 -9.6655 -2.9745 19 6 -1.5567 -8.7074 -3.9702 20 6 -1.0899 -7.4297 -3.7249 21 17 -1.1523 -6.2266 -4.9749 22 6 0.8594 -3.0027 -1.3995 23 1 -0.4850 0.8400 0.0004 24 1 0.4438 -2.5306 0.7313 25 1 2.1885 -4.2517 0.9621 26 1 3.1373 -3.5673 -0.4258 27 1 -0.4327 -5.0674 -2.7409 28 1 -0.1116 -7.8314 -0.5110 29 1 -0.9547 -10.1003 -0.9557 30 1 -1.8736 -10.6630 -3.1683 31 1 -1.9608 -8.9573 -4.9401 32 1 1.5077 -2.6295 -2.1923 33 1 -0.1994 -2.8784 -1.6265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596456064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:36 Heat of formation + Delta-G solvation = 31.614317 kcal Electronic energy + Delta-G solvation = -18841.913397 eV Core-core repulsion = 15701.971541 eV Total energy + Delta-G solvation = -3139.941856 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50523 -39.00932 -37.38557 -36.48424 -34.51613 -32.76345 -30.77748 -30.21708 -28.35996 -25.20846 -25.05835 -23.13538 -22.38376 -20.68324 -19.09233 -18.01674 -17.16287 -16.66030 -16.52786 -15.52948 -14.98178 -14.80310 -14.51256 -14.26215 -13.83814 -13.75024 -13.27636 -12.73647 -12.31667 -12.11562 -11.69148 -11.61388 -11.52442 -11.38362 -11.01496 -11.00542 -10.86012 -10.47918 -10.37347 -9.86460 -9.32229 -9.18109 -8.83372 -8.64380 -8.21398 -7.79043 -6.23416 -4.29656 1.10759 1.28409 2.05428 2.76466 3.22557 3.28353 3.30314 3.35456 3.79984 4.17117 4.31323 4.72387 4.91847 5.05840 5.16755 5.31641 5.41288 5.75981 5.89119 6.06294 6.06967 6.14079 6.19237 6.34868 6.39818 6.40776 6.50832 6.54001 6.65926 6.94871 7.42617 7.49778 7.74065 8.11131 8.46711 8.74466 8.84122 9.37688 10.86200 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.003910 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.779085 B = 7158.586480 C = 7814.683523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.122 3.878 11 N -0.657 5.657 12 C 0.725 3.275 13 O -0.589 6.589 14 N -0.681 5.681 15 C 0.196 3.804 16 C -0.125 4.125 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.089 4.089 20 C -0.081 4.081 21 Cl -0.070 7.070 22 C 0.094 3.906 23 H 0.265 0.735 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.410 0.590 28 H 0.158 0.842 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 -13.610 -7.112 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.019 3.981 10 C 0.000 4.000 11 N -0.394 5.394 12 C 0.430 3.570 13 O -0.469 6.469 14 N -0.327 5.327 15 C 0.098 3.902 16 C -0.146 4.146 17 C -0.111 4.111 18 C -0.161 4.161 19 C -0.108 4.108 20 C -0.111 4.111 21 Cl -0.042 7.042 22 C -0.028 4.028 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.246 0.754 28 H 0.176 0.824 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.981 -14.140 -6.800 16.187 hybrid contribution 0.197 1.426 -0.666 1.586 sum -3.784 -12.714 -7.465 15.222 Atomic orbital electron populations 1.69938 1.06096 1.27355 1.48775 1.25030 0.94869 0.99446 0.94102 0.86576 0.79587 0.82532 0.78876 1.20040 1.21206 1.19985 1.20859 0.93037 0.89447 1.52417 0.91759 1.20374 0.94791 0.91070 0.91885 1.23304 0.93768 0.92230 0.90742 1.49237 1.44734 1.03105 1.42291 1.15317 0.79373 0.82571 0.79775 1.90816 1.59596 1.39946 1.56562 1.42728 1.43149 1.07725 1.39076 1.17381 0.95647 0.85573 0.91617 1.21567 1.00406 0.92441 1.00189 1.21170 0.96676 0.96198 0.97057 1.21014 1.02395 0.99305 0.93369 1.20794 0.99325 0.90524 1.00134 1.20643 1.10012 0.91846 0.88615 1.98359 1.97429 1.56278 1.52115 1.23734 0.99700 0.76739 1.02618 0.92504 0.91162 0.92176 0.90805 0.75360 0.82429 0.85268 0.85360 0.84911 0.90689 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 13.26 55.43 0.74 -22.90 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.52 -12.88 8.83 -34.44 -0.30 -13.19 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 0.87 3.79 -91.12 -0.35 0.52 16 10 C 0.12 2.47 8.17 -8.52 -0.07 2.40 16 11 N -0.66 -13.21 3.69 -190.87 -0.70 -13.91 16 12 C 0.73 14.38 8.60 -86.92 -0.75 13.63 16 13 O -0.59 -12.82 14.28 5.28 0.08 -12.74 16 14 N -0.68 -11.51 5.20 -14.19 -0.07 -11.58 16 15 C 0.20 3.05 6.43 -83.63 -0.54 2.51 16 16 C -0.13 -1.88 8.72 -39.40 -0.34 -2.23 16 17 C -0.09 -1.07 10.04 -39.61 -0.40 -1.47 16 18 C -0.14 -1.44 10.04 -39.55 -0.40 -1.84 16 19 C -0.09 -0.98 9.82 -39.58 -0.39 -1.37 16 20 C -0.08 -1.09 6.34 -39.32 -0.25 -1.34 16 21 Cl -0.07 -0.89 27.78 -51.86 -1.44 -2.33 16 22 C 0.09 1.94 7.88 -8.38 -0.07 1.87 16 23 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 24 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 27 H 0.41 6.45 7.49 -40.82 -0.31 6.15 16 28 H 0.16 2.68 5.78 -52.49 -0.30 2.38 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -27.72 303.35 -9.33 -37.05 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.53 Total: 5.98 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.94 Total: 1.18 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.04 Total: -48.39 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.44 Total: -2.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.72 -9.33 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.669 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds