Wall clock time and date at job start Tue Mar 31 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47175 * 240.00284 * 3 2 1 5 5 H 1.48499 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46894 * 120.00297 * 3 2 1 7 7 C 1.37882 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99454 * 359.97438 * 7 2 1 10 10 C 1.53497 * 114.20476 * 179.97438 * 9 7 2 11 11 N 1.47066 * 87.98677 * 220.14609 * 10 9 7 12 12 C 1.34772 * 136.05588 * 207.08052 * 11 10 9 13 13 O 1.21594 * 120.00261 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99711 * 180.02562 * 12 11 10 15 15 C 1.40007 * 119.99730 * 185.47905 * 14 12 11 16 16 C 1.38847 * 120.07620 * 24.78225 * 15 14 12 17 17 C 1.38115 * 119.94361 * 179.74415 * 16 15 14 18 18 C 1.38289 * 120.09173 * 0.52618 * 17 16 15 19 19 C 1.38268 * 120.15003 * 359.74623 * 18 17 16 20 20 C 1.38225 * 120.05267 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.04475 * 180.02562 * 20 19 18 22 22 C 1.47067 * 87.88180 * 27.34208 * 11 10 9 23 23 H 0.97000 * 120.00138 * 359.97438 * 1 2 3 24 24 H 1.09000 * 113.28658 * 313.06295 * 9 7 2 25 25 H 1.09004 * 113.46555 * 105.36473 * 10 9 7 26 26 H 1.09003 * 113.51967 * 334.94178 * 10 9 7 27 27 H 0.96995 * 120.00128 * 5.76154 * 14 12 11 28 28 H 1.08002 * 120.02122 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.95359 * 180.27325 * 17 16 15 30 30 H 1.07999 * 119.93031 * 179.76848 * 18 17 16 31 31 H 1.08001 * 119.97274 * 180.02562 * 19 18 17 32 32 H 1.09003 * 113.46679 * 87.43578 * 22 11 10 33 33 H 1.08997 * 113.46853 * 217.87338 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0018 11 7 1.2065 -4.3590 -0.9489 12 6 0.8310 -5.6134 -1.2679 13 8 1.3289 -6.5619 -0.6927 14 7 -0.0966 -5.8164 -2.2244 15 6 -0.5707 -7.1094 -2.4764 16 6 -0.5181 -8.0762 -1.4812 17 6 -0.9914 -9.3494 -1.7311 18 6 -1.5076 -9.6655 -2.9745 19 6 -1.5567 -8.7074 -3.9702 20 6 -1.0899 -7.4297 -3.7249 21 17 -1.1523 -6.2266 -4.9749 22 6 0.8594 -3.0027 -1.3995 23 1 -0.4850 0.8400 0.0004 24 1 0.4438 -2.5306 0.7313 25 1 2.1885 -4.2517 0.9621 26 1 3.1373 -3.5673 -0.4258 27 1 -0.4327 -5.0674 -2.7409 28 1 -0.1116 -7.8314 -0.5110 29 1 -0.9547 -10.1003 -0.9557 30 1 -1.8736 -10.6630 -3.1683 31 1 -1.9608 -8.9573 -4.9401 32 1 1.5077 -2.6295 -2.1923 33 1 -0.1994 -2.8784 -1.6265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596456064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:36 Heat of formation + Delta-G solvation = 16.517522 kcal Electronic energy + Delta-G solvation = -18842.568043 eV Core-core repulsion = 15701.971541 eV Total energy + Delta-G solvation = -3140.596502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.89502 -40.33312 -38.85775 -37.48007 -35.85773 -34.66574 -31.81360 -31.55505 -29.78908 -26.99784 -26.72218 -24.25678 -23.48137 -22.23712 -20.61738 -19.34923 -18.71007 -18.36413 -17.61463 -16.89659 -16.60925 -16.29611 -15.89255 -15.46416 -15.17024 -14.83825 -14.49886 -14.32473 -14.07490 -13.29728 -13.25749 -13.07439 -12.77065 -12.68586 -12.59726 -12.43839 -12.18731 -12.02636 -11.72456 -11.45196 -11.08329 -10.93771 -10.55199 -9.82290 -9.72220 -9.05486 -8.17173 -6.28583 0.11569 0.28762 1.03540 1.35834 1.49634 1.50911 1.57979 1.93055 2.45210 2.71333 2.74872 3.13655 3.75627 4.02228 4.13728 4.27870 4.34533 4.35795 4.41048 4.50559 4.67113 4.68915 4.85794 4.86744 4.93588 5.13823 5.23750 5.39539 5.51344 5.58334 5.80463 5.90449 6.04524 6.21523 6.80393 6.88884 7.30865 7.42143 8.92541 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.003910 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.779085 B = 7158.586480 C = 7814.683523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.129 3.871 11 N -0.661 5.661 12 C 0.724 3.276 13 O -0.612 6.612 14 N -0.675 5.675 15 C 0.161 3.839 16 C -0.148 4.148 17 C -0.090 4.090 18 C -0.124 4.124 19 C -0.085 4.085 20 C -0.086 4.086 21 Cl -0.069 7.069 22 C 0.110 3.890 23 H 0.265 0.735 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.413 0.587 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.082 0.918 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -15.094 -8.519 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.007 3.993 10 C 0.007 3.993 11 N -0.397 5.397 12 C 0.428 3.572 13 O -0.494 6.494 14 N -0.321 5.321 15 C 0.064 3.936 16 C -0.169 4.169 17 C -0.108 4.108 18 C -0.142 4.142 19 C -0.104 4.104 20 C -0.116 4.116 21 Cl -0.040 7.040 22 C -0.013 4.013 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.250 0.750 28 H 0.148 0.852 29 H 0.172 0.828 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.100 0.900 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.147 -15.653 -8.228 18.164 hybrid contribution 0.183 1.728 -0.244 1.755 sum -3.965 -13.925 -8.472 16.775 Atomic orbital electron populations 1.70053 1.07459 1.27947 1.50168 1.25758 0.95533 1.02560 0.93947 0.85599 0.78304 0.78631 0.79067 1.19258 1.21406 1.19584 1.21182 0.93451 0.90310 1.51741 0.91253 1.20243 0.94688 0.91719 0.92641 1.23180 0.93883 0.90992 0.91235 1.49148 1.44917 1.03205 1.42439 1.15406 0.79724 0.81941 0.80151 1.90800 1.60585 1.40407 1.57580 1.42567 1.42499 1.08785 1.38277 1.17644 0.97858 0.85020 0.93050 1.21484 1.02060 0.94177 0.99196 1.21489 0.95554 0.95139 0.98630 1.21496 1.00013 1.00773 0.91957 1.21244 0.98045 0.89402 1.01678 1.20821 1.09966 0.92911 0.87920 1.98359 1.97419 1.56505 1.51703 1.23470 0.99690 0.76822 1.01289 0.92650 0.94070 0.91967 0.89571 0.74996 0.85233 0.82752 0.81220 0.81976 0.90028 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 13.26 21.45 0.28 -49.53 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.96 40.30 29.54 68.60 2.03 42.32 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.53 -26.34 8.83 25.60 0.23 -26.11 16 8 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.03 1.24 3.79 -11.12 -0.04 1.19 16 10 C 0.13 5.30 8.17 83.17 0.68 5.98 16 11 N -0.66 -26.95 3.69 -876.06 -3.23 -30.18 16 12 C 0.72 29.29 8.60 179.06 1.54 30.83 16 13 O -0.61 -27.31 14.28 -4.01 -0.06 -27.37 16 14 N -0.68 -23.18 5.20 -317.07 -1.65 -24.83 16 15 C 0.16 4.98 6.43 38.15 0.25 5.22 16 16 C -0.15 -4.44 8.72 22.39 0.20 -4.25 16 17 C -0.09 -1.88 10.04 22.25 0.22 -1.66 16 18 C -0.12 -2.02 10.04 22.29 0.22 -1.79 16 19 C -0.08 -1.59 9.82 22.27 0.22 -1.37 16 20 C -0.09 -2.19 6.34 22.44 0.14 -2.04 16 21 Cl -0.07 -1.65 27.78 -2.72 -0.08 -1.73 16 22 C 0.11 4.56 7.88 83.26 0.66 5.21 16 23 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 24 H 0.04 2.14 8.11 -2.39 -0.02 2.12 16 25 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 27 H 0.41 13.19 7.49 -92.71 -0.69 12.50 16 28 H 0.13 4.60 5.78 -2.91 -0.02 4.58 16 29 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -60.36 303.35 2.52 -57.84 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.45 Total: 20.63 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 4.77 Total: 12.84 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.59 Total: -104.54 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.06 Total: -27.37 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -60.36 2.52 -57.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.356 kcal (2) G-P(sol) polarization free energy of solvation -60.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds