Wall clock time and date at job start Tue Mar 31 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47070 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47054 * 30.00473 * 3 2 1 6 6 H 1.48501 * 109.46923 * 150.00432 * 3 2 1 7 7 C 1.37874 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53947 * 113.74019 * 81.25835 * 9 7 2 11 11 N 1.47926 * 85.99808 * 138.00498 * 10 9 7 12 12 C 1.34775 * 134.50039 * 155.35504 * 11 10 9 13 13 O 1.21586 * 119.99553 * 179.97438 * 12 11 10 14 14 N 1.34775 * 120.00265 * 0.02562 * 12 11 10 15 15 C 1.39949 * 119.99888 * 175.37555 * 14 12 11 16 16 C 1.38886 * 120.06193 * 35.09257 * 15 14 12 17 17 C 1.38105 * 119.95558 * 179.97438 * 16 15 14 18 18 C 1.38278 * 120.08326 * 359.97438 * 17 16 15 19 19 C 1.38384 * 120.12452 * 0.02562 * 18 17 16 20 20 Cl 1.73606 * 119.97651 * 180.02562 * 19 18 17 21 21 C 1.38253 * 120.04228 * 359.73468 * 19 18 17 22 22 C 1.47584 * 91.00438 * 335.35742 * 11 10 9 23 23 H 0.97002 * 120.00176 * 359.97438 * 1 2 3 24 24 H 1.08999 * 112.94439 * 309.66931 * 9 7 2 25 25 H 1.09003 * 113.77259 * 252.36303 * 10 9 7 26 26 H 1.09000 * 113.76991 * 23.75600 * 10 9 7 27 27 H 0.96997 * 120.00120 * 355.37882 * 14 12 11 28 28 H 1.08004 * 120.02543 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.96000 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.94162 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.03783 * 180.29568 * 21 19 18 32 32 H 1.09002 * 113.76438 * 270.33711 * 22 11 10 33 33 H 1.08998 * 113.76954 * 138.93985 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 0.7551 -2.9285 -1.3933 11 7 1.1898 -4.2907 -1.0140 12 6 0.8397 -5.5347 -1.3964 13 8 1.3847 -6.5001 -0.8970 14 7 -0.1137 -5.7087 -2.3329 15 6 -0.4094 -6.9943 -2.8001 16 6 -0.3479 -8.0798 -1.9359 17 6 -0.6406 -9.3475 -2.3991 18 6 -0.9953 -9.5373 -3.7221 19 6 -1.0576 -8.4581 -4.5861 20 17 -1.5040 -8.7007 -6.2462 21 6 -0.7705 -7.1862 -4.1267 22 6 2.1608 -3.7401 -0.0486 23 1 -0.4850 0.8400 0.0004 24 1 0.4840 -2.5470 0.7724 25 1 -0.3224 -2.8302 -1.5256 26 1 1.3269 -2.4978 -2.2153 27 1 -0.5950 -4.9428 -2.6832 28 1 -0.0722 -7.9326 -0.9021 29 1 -0.5924 -10.1917 -1.7273 30 1 -1.2233 -10.5297 -4.0820 31 1 -0.8238 -6.3433 -4.7999 32 1 3.1446 -3.5473 -0.4765 33 1 2.2048 -4.2893 0.8920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596456415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:08 Heat of formation + Delta-G solvation = 25.997393 kcal Electronic energy + Delta-G solvation = -18596.009081 eV Core-core repulsion = 15455.823657 eV Total energy + Delta-G solvation = -3140.185424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43186 -38.94820 -37.35054 -36.46893 -34.44450 -32.74723 -30.81724 -30.19306 -28.35083 -25.27190 -25.15055 -22.96664 -22.52227 -20.59807 -19.07632 -17.97888 -17.22146 -16.68711 -16.33850 -15.51739 -15.08176 -14.82629 -14.54018 -14.36363 -13.84938 -13.62861 -13.35040 -12.77180 -12.23598 -11.98256 -11.89472 -11.68417 -11.56791 -11.32381 -11.06892 -11.05099 -10.83294 -10.49234 -10.23433 -9.86208 -9.40143 -9.15542 -8.87178 -8.66567 -8.28220 -7.82176 -6.24732 -4.30594 1.14373 1.17986 1.96158 2.82925 3.19796 3.28004 3.30764 3.37132 3.76413 4.17263 4.30155 4.74426 4.95522 5.06554 5.16695 5.32508 5.41255 5.62125 5.90569 6.04577 6.10179 6.10832 6.24109 6.29953 6.32563 6.40322 6.46672 6.51705 6.64831 6.96276 7.44369 7.49849 7.72964 8.08975 8.47093 8.73035 8.87206 9.36895 10.84885 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.003275 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.554066 B = 8547.178772 C = 9136.689032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.103 3.897 11 N -0.655 5.655 12 C 0.718 3.282 13 O -0.593 6.593 14 N -0.688 5.688 15 C 0.193 3.807 16 C -0.118 4.118 17 C -0.089 4.089 18 C -0.137 4.137 19 C -0.015 4.015 20 Cl -0.075 7.075 21 C -0.148 4.148 22 C 0.125 3.875 23 H 0.264 0.736 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.409 0.591 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -13.364 -7.867 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.016 3.984 10 C -0.019 4.019 11 N -0.392 5.392 12 C 0.422 3.578 13 O -0.473 6.473 14 N -0.334 5.334 15 C 0.096 3.904 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.157 4.157 19 C -0.042 4.042 20 Cl -0.047 7.047 21 C -0.170 4.170 22 C 0.003 3.997 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.245 0.755 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.092 0.908 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.631 -14.040 -7.655 16.398 hybrid contribution 0.088 1.348 -0.578 1.469 sum -3.543 -12.692 -8.233 15.538 Atomic orbital electron populations 1.69942 1.06061 1.27210 1.49121 1.25020 0.94878 0.99421 0.94228 0.86526 0.79928 0.82932 0.78264 1.20517 1.21122 1.19668 1.20966 0.93115 0.89608 1.52193 0.91778 1.20483 0.94170 0.91361 0.92343 1.23808 0.99218 0.76402 1.02505 1.49793 1.42398 1.03059 1.43954 1.15582 0.79622 0.83298 0.79314 1.90844 1.58558 1.38781 1.59090 1.42644 1.40140 1.07287 1.43379 1.17376 0.96843 0.84993 0.91168 1.21546 0.99444 0.91497 1.01410 1.21012 0.97861 0.97124 0.94800 1.20963 1.03280 0.98008 0.93428 1.20521 1.03565 0.94435 0.85663 1.98361 1.91277 1.97131 1.17896 1.20701 1.05669 0.96501 0.94084 1.23445 0.93352 0.92887 0.89968 0.92596 0.91710 0.91938 0.90616 0.75546 0.83383 0.84884 0.85171 0.84769 0.90766 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.31 13.29 55.43 0.74 -22.57 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.52 -12.77 8.77 -34.44 -0.30 -13.08 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 0.80 3.60 -90.84 -0.33 0.47 16 10 C 0.10 2.03 8.03 -2.77 -0.02 2.01 16 11 N -0.66 -12.76 3.62 -183.87 -0.66 -13.42 16 12 C 0.72 13.76 8.61 -86.92 -0.75 13.01 16 13 O -0.59 -12.77 14.51 5.29 0.08 -12.69 16 14 N -0.69 -10.74 5.34 -14.23 -0.08 -10.81 16 15 C 0.19 2.82 6.30 -83.70 -0.53 2.29 16 16 C -0.12 -1.71 8.69 -39.39 -0.34 -2.05 16 17 C -0.09 -1.03 10.04 -39.62 -0.40 -1.43 16 18 C -0.14 -1.50 9.83 -39.51 -0.39 -1.88 16 19 C -0.01 -0.17 6.32 -39.52 -0.25 -0.42 16 20 Cl -0.08 -0.80 28.95 -51.86 -1.50 -2.30 16 21 C -0.15 -1.87 9.75 -39.36 -0.38 -2.25 16 22 C 0.13 2.50 8.39 -2.96 -0.02 2.48 16 23 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 24 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 27 H 0.41 5.55 8.44 -40.82 -0.34 5.21 16 28 H 0.15 2.41 6.22 -52.48 -0.33 2.08 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -27.55 305.91 -9.24 -36.79 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.59 Total: 5.09 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -3.81 Total: 0.76 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.00 Total: -46.81 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.55 -9.24 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.791 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds