Wall clock time and date at job start Tue Mar 31 2020 01:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47070 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47054 * 30.00473 * 3 2 1 6 6 H 1.48501 * 109.46923 * 150.00432 * 3 2 1 7 7 C 1.37874 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.53947 * 113.74019 * 81.25835 * 9 7 2 11 11 N 1.47926 * 85.99808 * 138.00498 * 10 9 7 12 12 C 1.34775 * 134.50039 * 155.35504 * 11 10 9 13 13 O 1.21586 * 119.99553 * 179.97438 * 12 11 10 14 14 N 1.34775 * 120.00265 * 0.02562 * 12 11 10 15 15 C 1.39949 * 119.99888 * 175.37555 * 14 12 11 16 16 C 1.38886 * 120.06193 * 35.09257 * 15 14 12 17 17 C 1.38105 * 119.95558 * 179.97438 * 16 15 14 18 18 C 1.38278 * 120.08326 * 359.97438 * 17 16 15 19 19 C 1.38384 * 120.12452 * 0.02562 * 18 17 16 20 20 Cl 1.73606 * 119.97651 * 180.02562 * 19 18 17 21 21 C 1.38253 * 120.04228 * 359.73468 * 19 18 17 22 22 C 1.47584 * 91.00438 * 335.35742 * 11 10 9 23 23 H 0.97002 * 120.00176 * 359.97438 * 1 2 3 24 24 H 1.08999 * 112.94439 * 309.66931 * 9 7 2 25 25 H 1.09003 * 113.77259 * 252.36303 * 10 9 7 26 26 H 1.09000 * 113.76991 * 23.75600 * 10 9 7 27 27 H 0.96997 * 120.00120 * 355.37882 * 14 12 11 28 28 H 1.08004 * 120.02543 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.96000 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.94162 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.03783 * 180.29568 * 21 19 18 32 32 H 1.09002 * 113.76438 * 270.33711 * 22 11 10 33 33 H 1.08998 * 113.76954 * 138.93985 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 0.7551 -2.9285 -1.3933 11 7 1.1898 -4.2907 -1.0140 12 6 0.8397 -5.5347 -1.3964 13 8 1.3847 -6.5001 -0.8970 14 7 -0.1137 -5.7087 -2.3329 15 6 -0.4094 -6.9943 -2.8001 16 6 -0.3479 -8.0798 -1.9359 17 6 -0.6406 -9.3475 -2.3991 18 6 -0.9953 -9.5373 -3.7221 19 6 -1.0576 -8.4581 -4.5861 20 17 -1.5040 -8.7007 -6.2462 21 6 -0.7705 -7.1862 -4.1267 22 6 2.1608 -3.7401 -0.0486 23 1 -0.4850 0.8400 0.0004 24 1 0.4840 -2.5470 0.7724 25 1 -0.3224 -2.8302 -1.5256 26 1 1.3269 -2.4978 -2.2153 27 1 -0.5950 -4.9428 -2.6832 28 1 -0.0722 -7.9326 -0.9021 29 1 -0.5924 -10.1917 -1.7273 30 1 -1.2233 -10.5297 -4.0820 31 1 -0.8238 -6.3433 -4.7999 32 1 3.1446 -3.5473 -0.4765 33 1 2.2048 -4.2893 0.8920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596456415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:07 Heat of formation + Delta-G solvation = 11.360718 kcal Electronic energy + Delta-G solvation = -18596.643775 eV Core-core repulsion = 15455.823657 eV Total energy + Delta-G solvation = -3140.820118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77117 -40.22077 -38.77819 -37.43919 -35.72706 -34.62124 -31.80764 -31.54012 -29.76818 -26.92339 -26.87737 -24.04686 -23.63164 -22.10997 -20.58106 -19.25715 -18.72192 -18.37983 -17.41015 -16.82920 -16.55437 -16.39007 -15.91820 -15.53957 -15.22655 -14.63620 -14.51750 -14.31302 -13.99741 -13.31665 -13.19890 -12.99236 -12.85568 -12.80271 -12.54595 -12.47438 -12.24098 -11.93597 -11.57807 -11.30605 -11.14735 -10.88991 -10.55057 -9.85935 -9.67798 -9.11565 -8.16050 -6.26694 0.14247 0.20087 1.01502 1.46818 1.47739 1.51874 1.59656 1.98910 2.46093 2.67389 2.79461 3.15851 3.83298 4.09283 4.13966 4.20006 4.33341 4.37400 4.44752 4.54274 4.65922 4.70440 4.73803 4.89862 4.98295 5.13845 5.25425 5.33278 5.42500 5.61332 5.82686 5.87251 6.13626 6.23383 6.81240 6.94838 7.38894 7.44557 8.93493 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.003275 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.554066 B = 8547.178772 C = 9136.689032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.066 0.934 9 C 0.025 3.975 10 C 0.119 3.881 11 N -0.657 5.657 12 C 0.716 3.284 13 O -0.619 6.619 14 N -0.677 5.677 15 C 0.166 3.834 16 C -0.138 4.138 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.021 4.021 20 Cl -0.062 7.062 21 C -0.145 4.145 22 C 0.132 3.868 23 H 0.264 0.736 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.417 0.583 28 H 0.124 0.876 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -14.314 -9.305 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.005 3.995 10 C -0.003 4.003 11 N -0.394 5.394 12 C 0.420 3.580 13 O -0.501 6.501 14 N -0.325 5.325 15 C 0.071 3.929 16 C -0.159 4.159 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.048 4.048 20 Cl -0.033 7.033 21 C -0.166 4.166 22 C 0.010 3.990 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.255 0.745 28 H 0.142 0.858 29 H 0.178 0.822 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.102 0.898 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.628 -15.008 -9.122 17.934 hybrid contribution 0.039 1.514 -0.168 1.524 sum -3.589 -13.494 -9.290 16.771 Atomic orbital electron populations 1.70042 1.07274 1.27799 1.50385 1.25705 0.95550 1.02352 0.94146 0.85589 0.78726 0.79246 0.78289 1.19985 1.21400 1.19235 1.21270 0.93401 0.90607 1.51549 0.91597 1.20385 0.94217 0.91788 0.93084 1.23550 0.99418 0.76401 1.00972 1.49665 1.42443 1.03181 1.44076 1.15664 0.80044 0.82569 0.79703 1.90825 1.59724 1.39357 1.60202 1.42446 1.39234 1.08362 1.42434 1.17569 0.98768 0.84396 0.92191 1.21507 1.00899 0.92981 1.00506 1.21279 0.96630 0.96667 0.95639 1.21308 1.01378 0.99079 0.92789 1.20688 1.03180 0.94378 0.86531 1.98370 1.91091 1.97035 1.16795 1.20797 1.04964 0.97510 0.93339 1.23326 0.93436 0.91779 0.90499 0.92684 0.94452 0.91540 0.90205 0.74532 0.85806 0.82249 0.82307 0.83560 0.89831 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.58 13.29 21.45 0.28 -48.29 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.96 39.90 29.54 68.60 2.03 41.92 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.53 -26.01 8.77 25.60 0.22 -25.79 16 8 H 0.07 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.02 1.11 3.60 -10.88 -0.04 1.08 16 10 C 0.12 4.70 8.03 86.42 0.69 5.39 16 11 N -0.66 -25.60 3.62 -853.90 -3.09 -28.69 16 12 C 0.72 27.56 8.61 179.06 1.54 29.10 16 13 O -0.62 -26.99 14.51 -3.99 -0.06 -27.05 16 14 N -0.68 -21.01 5.34 -317.20 -1.69 -22.71 16 15 C 0.17 4.76 6.30 38.14 0.24 5.00 16 16 C -0.14 -3.94 8.69 22.39 0.19 -3.75 16 17 C -0.08 -1.76 10.04 22.25 0.22 -1.54 16 18 C -0.13 -2.38 9.83 22.31 0.22 -2.16 16 19 C -0.02 -0.43 6.32 22.31 0.14 -0.29 16 20 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.23 16 21 C -0.14 -3.43 9.75 22.41 0.22 -3.21 16 22 C 0.13 5.27 8.39 86.49 0.73 5.99 16 23 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.08 3.10 8.09 -2.39 -0.02 3.08 16 27 H 0.42 11.16 8.44 -92.71 -0.78 10.37 16 28 H 0.12 4.14 6.22 -2.91 -0.02 4.12 16 29 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.08 3.17 8.09 -2.39 -0.02 3.15 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -58.35 305.91 2.60 -55.75 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.36 Total: 18.87 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 4.84 Total: 11.42 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.50 Total: -99.69 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -58.35 2.60 -55.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596456415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.112 kcal (2) G-P(sol) polarization free energy of solvation -58.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds