Wall clock time and date at job start Tue Mar 31 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76197 * 103.00197 * 2 1 4 4 C 1.35130 * 125.51886 * 180.02562 * 3 2 1 5 5 C 1.47055 * 105.89134 * 179.97438 * 4 3 2 6 6 C 1.47281 * 127.15006 * 179.97438 * 5 4 3 7 7 O 1.21654 * 119.99739 * 173.22528 * 6 5 4 8 8 N 1.34781 * 120.00401 * 353.21633 * 6 5 4 9 9 C 1.36963 * 119.99468 * 3.37041 * 8 6 5 10 10 H 1.08001 * 120.00079 * 308.66168 * 9 8 6 11 11 C 1.38971 * 119.99628 * 128.66930 * 9 8 6 12 12 N 1.31418 * 119.99672 * 171.38220 * 11 9 8 13 13 Si 1.86797 * 120.00079 * 351.37704 * 11 9 8 14 14 H 1.48499 * 109.46987 * 91.30071 * 13 11 9 15 15 H 1.48499 * 109.46817 * 211.29835 * 13 11 9 16 16 H 1.48496 * 109.47272 * 331.30103 * 13 11 9 17 17 C 1.46493 * 119.99966 * 183.36676 * 8 6 5 18 18 C 1.47202 * 109.47092 * 90.56406 * 17 8 6 19 19 N 8.44899 * 128.64156 * 24.19099 * 2 1 3 20 20 C 1.36443 * 105.69437 * 359.97438 * 5 4 3 21 21 C 1.50707 * 125.72749 * 180.02562 * 20 5 4 22 22 O 1.33964 * 108.55002 * 0.02562 * 20 5 4 23 23 H 1.08995 * 109.47431 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47451 * 300.00460 * 1 2 3 25 25 H 1.09006 * 109.47035 * 60.00339 * 1 2 3 26 26 H 1.08001 * 127.05283 * 359.70696 * 4 3 2 27 27 H 0.96999 * 119.99630 * 179.97438 * 12 11 9 28 28 H 1.09004 * 109.46841 * 210.55706 * 17 8 6 29 29 H 1.08998 * 109.47783 * 330.56547 * 17 8 6 30 30 H 1.08996 * 109.47311 * 179.97438 * 21 20 5 31 31 H 1.09005 * 109.46551 * 299.97495 * 21 20 5 32 32 H 1.09002 * 109.46907 * 59.97220 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4587 2.2343 -0.0005 5 6 3.2890 3.6950 -0.0009 6 6 4.3525 4.7140 -0.0010 7 8 4.0678 5.8901 -0.1256 8 7 5.6409 4.3434 0.1372 9 6 5.9676 3.0152 0.2084 10 1 5.4600 2.3712 0.9112 11 6 6.9522 2.4963 -0.6238 12 7 7.3855 1.2689 -0.4430 13 14 7.6597 3.5435 -1.9994 14 1 8.8532 4.2737 -1.5018 15 1 8.0515 2.6702 -3.1348 16 1 6.6369 4.5189 -2.4551 17 6 6.6919 5.3613 0.2112 18 6 6.9169 5.7328 1.6177 19 7 7.0899 6.0197 2.7042 20 6 1.9416 3.9101 -0.0012 21 6 1.2655 5.2569 -0.0022 22 8 1.3206 2.7231 -0.0004 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 4.3899 1.6873 0.0035 27 1 8.0725 0.9066 -1.0241 28 1 7.6143 4.9625 -0.2112 29 1 6.3851 6.2422 -0.3526 30 1 0.1841 5.1206 -0.0027 31 1 1.5613 5.8126 0.8877 32 1 1.5622 5.8117 -0.8923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597028996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:19 Heat of formation + Delta-G solvation = 29.219179 kcal Electronic energy + Delta-G solvation = -19535.428627 eV Core-core repulsion = 16397.426617 eV Total energy + Delta-G solvation = -3138.002011 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.93416 -38.97071 -36.05437 -34.90319 -32.57861 -32.13083 -31.39960 -28.99027 -28.23143 -26.44563 -25.04702 -22.30390 -20.86611 -19.20338 -18.58180 -17.51398 -16.05611 -15.97422 -15.89018 -15.74979 -15.06996 -14.29152 -13.95432 -13.75030 -13.60118 -13.56025 -12.93880 -12.91064 -12.70045 -12.62419 -12.39308 -12.27163 -12.02982 -11.75317 -11.41813 -11.20084 -11.04867 -10.54931 -10.33797 -10.14264 -9.52444 -9.41924 -8.95412 -8.77793 -8.02034 -6.99018 -6.58563 -4.42748 1.50951 1.85410 2.10652 2.59179 2.92334 3.09438 3.14282 3.16806 3.38199 3.77461 3.97485 4.07172 4.34624 4.62103 4.90753 5.04406 5.07166 5.24897 5.60396 5.63761 5.66736 5.73488 5.81577 5.84021 5.94099 6.16386 6.33870 6.57690 7.10022 7.16546 7.42208 7.83784 8.05920 8.12459 8.73723 9.03535 9.36220 10.47767 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.007043 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.091832 B = 3974.675556 C = 4955.719642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.027 6.027 3 C -0.074 4.074 4 C -0.107 4.107 5 C -0.191 4.191 6 C 0.571 3.429 7 O -0.583 6.583 8 N -0.459 5.459 9 C -0.356 4.356 10 H 0.115 0.885 11 C 0.072 3.928 12 N -0.856 5.856 13 Si 0.869 3.131 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.253 1.253 17 C 0.187 3.813 18 C 0.217 3.783 19 N -0.451 5.451 20 C 0.047 3.953 21 C -0.061 4.061 22 O -0.182 6.182 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.200 0.800 27 H 0.280 0.720 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 -0.637 -3.360 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.209 5.791 3 C -0.232 4.232 4 C -0.133 4.133 5 C -0.197 4.197 6 C 0.363 3.637 7 O -0.468 6.468 8 N -0.181 5.181 9 C -0.483 4.483 10 H 0.132 0.868 11 C -0.137 4.137 12 N -0.489 5.489 13 Si 0.695 3.305 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.177 1.177 17 C 0.061 3.939 18 C -0.102 4.102 19 N -0.130 5.130 20 C -0.009 4.009 21 C -0.118 4.118 22 O -0.081 6.081 23 H 0.124 0.876 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.217 0.783 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.445 -0.867 -1.876 9.669 hybrid contribution -0.100 1.073 -1.073 1.521 sum -9.546 0.205 -2.949 9.993 Atomic orbital electron populations 1.23543 0.95940 1.06574 1.06076 1.85795 1.04880 0.93983 1.94421 1.24017 0.90992 0.91567 1.16577 1.24086 0.97246 0.92483 0.99531 1.20933 0.92262 0.93871 1.12633 1.17401 0.82490 0.86482 0.77374 1.90659 1.83282 1.18442 1.54393 1.43308 1.03179 1.05969 1.65619 1.19295 1.24627 0.82094 1.22288 0.86751 1.25500 0.95995 0.95669 0.96520 1.69637 1.27171 1.14813 1.37310 0.86969 0.80053 0.81078 0.82404 1.19387 1.20609 1.17697 1.19325 0.94806 0.95239 0.84500 1.29959 0.92450 0.92048 0.95769 1.81061 1.09393 1.10305 1.12257 1.22695 0.90980 0.85908 1.01314 1.20316 0.98891 0.87655 1.04897 1.83801 1.37105 1.13514 1.73668 0.87611 0.89825 0.89801 0.78303 0.90977 0.87578 0.86505 0.91534 0.89278 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.45 101.05 1.06 -0.55 16 2 S -0.03 -0.40 22.74 -107.50 -2.44 -2.84 16 3 C -0.07 -1.36 7.32 29.63 0.22 -1.14 16 4 C -0.11 -2.22 9.15 -37.11 -0.34 -2.56 16 5 C -0.19 -4.02 6.16 -103.30 -0.64 -4.66 16 6 C 0.57 12.75 7.62 -12.58 -0.10 12.66 16 7 O -0.58 -13.18 15.21 5.23 0.08 -13.10 16 8 N -0.46 -10.27 1.93 -119.21 -0.23 -10.50 16 9 C -0.36 -8.50 7.02 -14.99 -0.11 -8.61 16 10 H 0.12 2.93 5.76 -52.49 -0.30 2.63 16 11 C 0.07 1.73 5.44 -17.46 -0.09 1.64 16 12 N -0.86 -21.66 13.96 55.50 0.77 -20.89 16 13 Si 0.87 18.11 24.96 -169.99 -4.24 13.87 16 14 H -0.27 -5.23 6.77 56.52 0.38 -4.85 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.25 -5.24 7.11 56.52 0.40 -4.84 16 17 C 0.19 3.71 4.64 -6.83 -0.03 3.68 16 18 C 0.22 4.51 15.77 -20.73 -0.33 4.18 16 19 N -0.45 -9.94 18.54 42.19 0.78 -9.16 16 20 C 0.05 0.86 7.37 -34.95 -0.26 0.61 16 21 C -0.06 -0.88 9.17 36.01 0.33 -0.55 16 22 O -0.18 -3.22 10.19 6.55 0.07 -3.15 16 23 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 25 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.20 4.50 5.07 -52.49 -0.27 4.24 16 27 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.11 2.03 4.03 -51.93 -0.21 1.82 16 29 H 0.12 2.08 7.36 -51.93 -0.38 1.70 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.34 7.99 -51.93 -0.41 0.93 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -27.82 297.85 -3.85 -31.68 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.84 Total: 4.91 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.29 Total: 4.69 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 1.33 Total: -40.55 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.15 Total: -16.25 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.24 Total: 13.87 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.44 Total: -2.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.82 -3.85 -31.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597028996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.897 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds